Wall clock time and date at job start Mon Mar 30 2020 03:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46736 * 2 1 4 4 N 1.46502 * 109.47330 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99669 * 275.35805 * 4 3 2 6 6 H 1.07992 * 120.00398 * 37.81632 * 5 4 3 7 7 C 1.38816 * 119.99379 * 217.81882 * 5 4 3 8 8 N 1.31618 * 120.00493 * 20.92739 * 7 5 4 9 9 Si 1.86807 * 119.99625 * 200.92571 * 7 5 4 10 10 H 1.48499 * 109.47163 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46843 * 120.00199 * 9 7 5 12 12 H 1.48497 * 109.46905 * 239.99846 * 9 7 5 13 13 C 1.46499 * 120.00301 * 95.34900 * 4 3 2 14 14 C 1.53002 * 109.47115 * 270.00538 * 13 4 3 15 15 H 1.08999 * 110.42393 * 65.85755 * 14 13 4 16 16 C 1.54906 * 110.37337 * 188.17034 * 14 13 4 17 17 C 1.55137 * 101.65386 * 155.90161 * 16 14 13 18 18 C 1.54320 * 103.01937 * 324.34738 * 17 16 14 19 19 N 1.47447 * 107.23416 * 22.28059 * 18 17 16 20 20 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 21 21 H 1.08988 * 109.47523 * 300.00208 * 1 2 3 22 22 H 1.09006 * 109.47023 * 60.00026 * 1 2 3 23 23 H 1.08996 * 109.47317 * 240.00430 * 2 1 3 24 24 H 1.08992 * 109.47206 * 120.00051 * 2 1 3 25 25 H 1.09004 * 109.47140 * 60.00037 * 3 2 1 26 26 H 1.08997 * 109.47569 * 299.99593 * 3 2 1 27 27 H 0.97000 * 120.00039 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47128 * 150.00635 * 13 4 3 29 29 H 1.09002 * 109.46914 * 30.00220 * 13 4 3 30 30 H 1.08997 * 110.98983 * 37.80965 * 16 14 13 31 31 H 1.08998 * 110.99188 * 273.99317 * 16 14 13 32 32 H 1.08998 * 110.70654 * 205.96699 * 17 16 14 33 33 H 1.09000 * 110.70860 * 82.73013 * 17 16 14 34 34 H 1.09000 * 109.88743 * 262.87890 * 18 17 16 35 35 H 1.08996 * 110.02553 * 141.77019 * 18 17 16 36 36 H 1.00900 * 110.99418 * 123.25404 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1891 1.3322 1.1817 6 1 3.8190 0.6832 1.9615 7 6 5.3584 2.0545 1.3766 8 7 5.6000 3.1245 0.6492 9 14 6.5890 1.5079 2.6713 10 1 6.0861 0.2850 3.3473 11 1 7.8922 1.2141 2.0228 12 1 6.7673 2.5898 3.6727 13 6 4.2380 1.5608 -1.2622 14 6 4.4933 0.1657 -1.8362 15 1 3.5527 -0.3081 -2.1167 16 6 5.4401 0.2507 -3.0593 17 6 6.0538 -1.1739 -3.0802 18 6 6.1780 -1.5210 -1.5817 19 7 5.2180 -0.6698 -0.8551 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8898 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.6765 1.9564 0.8900 26 1 1.6767 1.9564 -0.8900 27 1 6.4173 3.6290 0.7851 28 1 5.1904 2.0603 -1.0842 29 1 3.6492 2.1431 -1.9710 30 1 6.2109 1.0057 -2.9046 31 1 4.8803 0.4482 -3.9735 32 1 7.0343 -1.1643 -3.5561 33 1 5.3867 -1.8736 -3.5838 34 1 7.1912 -1.3154 -1.2362 35 1 5.9377 -2.5719 -1.4207 36 1 4.5768 -1.2294 -0.3131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233036972.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:25 Heat of formation + Delta-G solvation = -6.222915 kcal Electronic energy + Delta-G solvation = -15182.737307 eV Core-core repulsion = 12894.154536 eV Total energy + Delta-G solvation = -2288.582771 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.51115 -37.31338 -34.49047 -32.58581 -30.87643 -30.48179 -27.20085 -26.36837 -23.52522 -22.00527 -21.51825 -20.78676 -18.48087 -17.61800 -16.63038 -16.08349 -15.88101 -15.50617 -14.75394 -14.41645 -14.30568 -13.76870 -13.20629 -13.03716 -12.93352 -12.74781 -12.60231 -12.52674 -12.42765 -12.06497 -11.99051 -11.84751 -11.69823 -11.49239 -11.43986 -11.05509 -10.31375 -8.94993 -8.33970 -7.61909 -5.23447 1.48517 1.53350 1.60723 2.63782 3.46329 3.49834 3.81237 3.94088 4.10587 4.24208 4.27619 4.44507 4.48292 4.67965 4.78137 4.81995 4.85167 4.95438 5.00160 5.01969 5.09152 5.12871 5.22304 5.26889 5.35988 5.43336 5.49301 5.67346 5.82041 5.98712 6.41159 6.66406 6.81735 7.37613 8.07354 8.57833 9.32820 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.015880 C = 0.010219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.962603 B = 1762.798798 C = 2739.386196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 C 0.143 3.857 4 N -0.594 5.594 5 C -0.220 4.220 6 H 0.044 0.956 7 C -0.023 4.023 8 N -0.926 5.926 9 Si 0.947 3.053 10 H -0.272 1.272 11 H -0.299 1.299 12 H -0.301 1.301 13 C 0.161 3.839 14 C 0.073 3.927 15 H 0.036 0.964 16 C -0.124 4.124 17 C -0.129 4.129 18 C 0.043 3.957 19 N -0.672 5.672 20 H 0.061 0.939 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.048 0.952 24 H 0.040 0.960 25 H 0.026 0.974 26 H 0.038 0.962 27 H 0.243 0.757 28 H 0.063 0.937 29 H 0.019 0.981 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.969 -8.673 -6.904 11.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C 0.017 3.983 4 N -0.314 5.314 5 C -0.351 4.351 6 H 0.061 0.939 7 C -0.219 4.219 8 N -0.572 5.572 9 Si 0.778 3.222 10 H -0.197 1.197 11 H -0.226 1.226 12 H -0.229 1.229 13 C 0.034 3.966 14 C -0.038 4.038 15 H 0.054 0.946 16 C -0.162 4.162 17 C -0.167 4.167 18 C -0.086 4.086 19 N -0.302 5.302 20 H 0.080 0.920 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.388 -8.056 -6.686 11.004 hybrid contribution 0.352 -0.581 0.445 0.812 sum -3.035 -8.638 -6.242 11.081 Atomic orbital electron populations 1.21665 0.94690 1.01735 1.01694 1.21938 0.95922 0.98511 1.00308 1.21012 0.84373 0.94741 0.98137 1.43867 1.00071 1.84998 1.02474 1.18812 1.05130 1.17278 0.93864 0.93860 1.25467 1.01972 0.94892 0.99565 1.70105 1.25688 1.16820 1.44580 0.85534 0.80043 0.77434 0.79161 1.19670 1.22606 1.22897 1.20860 0.97638 0.92886 0.85188 1.22937 0.94175 0.96196 0.90524 0.94647 1.22694 0.98576 0.97400 0.97580 1.22712 1.01763 0.96164 0.96076 1.22648 0.97158 0.95664 0.93178 1.61492 1.20309 1.24255 1.24127 0.92023 0.93024 0.92417 0.93315 0.94069 0.95558 0.94323 0.94758 0.91927 0.96303 0.92911 0.89846 0.90105 0.90286 0.93192 0.92409 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.03 16 2 C -0.13 -4.38 6.23 30.59 0.19 -4.19 16 3 C 0.14 6.00 5.72 86.38 0.49 6.49 16 4 N -0.59 -29.28 2.35 -701.99 -1.65 -30.93 16 5 C -0.22 -12.06 8.66 84.03 0.73 -11.33 16 6 H 0.04 2.42 7.91 -2.91 -0.02 2.40 16 7 C -0.02 -1.31 4.96 84.86 0.42 -0.89 16 8 N -0.93 -55.79 11.46 21.65 0.25 -55.54 16 9 Si 0.95 47.31 29.60 68.60 2.03 49.35 16 10 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.30 -15.17 7.11 99.48 0.71 -14.47 16 12 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 13 C 0.16 7.61 5.15 86.38 0.45 8.05 16 14 C 0.07 2.82 3.57 45.39 0.16 2.98 16 15 H 0.04 1.30 6.91 -2.39 -0.02 1.28 16 16 C -0.12 -4.01 6.49 31.98 0.21 -3.80 16 17 C -0.13 -3.47 6.94 31.77 0.22 -3.25 16 18 C 0.04 1.36 7.58 86.65 0.66 2.02 16 19 N -0.67 -26.67 6.13 -482.44 -2.96 -29.63 16 20 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.05 1.66 6.91 -2.39 -0.02 1.64 16 24 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.03 1.16 8.08 -2.38 -0.02 1.14 16 26 H 0.04 1.53 7.83 -2.39 -0.02 1.51 16 27 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 28 H 0.06 3.50 5.43 -2.39 -0.01 3.49 16 29 H 0.02 0.86 7.86 -2.39 -0.02 0.84 16 30 H 0.05 1.93 7.99 -2.39 -0.02 1.91 16 31 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.33 13.11 8.91 -89.69 -0.80 12.31 16 Total: -1.00 -62.01 285.53 2.14 -59.87 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.23 Total: 13.84 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 4.24 Total: -6.95 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -4.36 Total: -116.10 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.35 kcal Total: -62.01 2.14 -59.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233036972.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.647 kcal (2) G-P(sol) polarization free energy of solvation -62.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds