Wall clock time and date at job start Mon Mar 30 2020 03:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47046 * 2 1 4 4 C 1.50702 * 109.46828 * 239.99999 * 2 1 3 5 5 H 1.07997 * 120.00467 * 245.45082 * 4 2 1 6 6 C 1.37882 * 119.99783 * 65.45183 * 4 2 1 7 7 N 1.31514 * 119.99912 * 9.73699 * 6 4 2 8 8 Si 1.86800 * 120.00064 * 189.73294 * 6 4 2 9 9 H 1.48498 * 109.47036 * 84.99456 * 8 6 4 10 10 H 1.48495 * 109.47245 * 204.99743 * 8 6 4 11 11 H 1.48505 * 109.47112 * 324.99581 * 8 6 4 12 12 N 1.46896 * 109.47048 * 120.00583 * 2 1 3 13 13 C 1.46844 * 111.00422 * 58.95049 * 12 2 1 14 14 C 1.53042 * 109.52553 * 174.15953 * 13 12 2 15 15 C 1.53115 * 109.27506 * 59.17929 * 14 13 12 16 16 H 1.09003 * 109.52591 * 182.37893 * 15 14 13 17 17 N 1.46906 * 109.52668 * 62.25399 * 15 14 13 18 18 C 1.53119 * 109.16256 * 302.34596 * 15 14 13 19 19 C 1.46853 * 110.99948 * 294.74029 * 12 2 1 20 20 H 1.09000 * 109.46117 * 65.82374 * 19 12 2 21 21 C 1.53006 * 109.46035 * 305.84806 * 19 12 2 22 22 H 1.09004 * 109.47113 * 182.20098 * 1 2 3 23 23 H 1.09004 * 109.46516 * 302.19633 * 1 2 3 24 24 H 1.08993 * 109.47040 * 62.19413 * 1 2 3 25 25 H 0.97003 * 119.99708 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.45958 * 54.14367 * 13 12 2 27 27 H 1.09002 * 109.45296 * 294.17056 * 13 12 2 28 28 H 1.08996 * 109.50031 * 299.23883 * 14 13 12 29 29 H 1.08997 * 109.50270 * 179.11715 * 14 13 12 30 30 H 1.00899 * 110.99781 * 59.99082 * 17 15 14 31 31 H 1.00897 * 111.00284 * 183.95891 * 17 15 14 32 32 H 1.09005 * 109.50442 * 177.59814 * 18 15 14 33 33 H 1.08998 * 109.50596 * 297.71032 * 18 15 14 34 34 H 1.09001 * 109.46849 * 59.99801 * 21 19 12 35 35 H 1.08998 * 109.46642 * 180.02562 * 21 19 12 36 36 H 1.08997 * 109.47019 * 299.99643 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5787 -1.6370 -1.1340 6 6 1.7943 -0.1774 -2.4797 7 7 1.3022 1.0368 -2.5936 8 14 2.1711 -1.1799 -4.0102 9 1 1.0163 -2.0599 -4.3221 10 1 2.4188 -0.2646 -5.1529 11 1 3.3777 -2.0123 -3.7721 12 7 2.0197 -0.6926 1.1993 13 6 1.5285 -2.0757 1.2458 14 6 2.1726 -2.8078 2.4254 15 6 1.8226 -2.0782 3.7252 16 1 2.3139 -2.5718 4.5637 17 7 0.3675 -2.1026 3.9255 18 6 2.3020 -0.6270 3.6317 19 6 1.6542 0.0419 2.4173 20 1 0.5704 0.0352 2.5340 21 6 2.1462 1.4866 2.3084 22 1 -0.3633 -1.0269 0.0395 23 1 -0.3632 0.5476 0.8697 24 1 -0.3633 0.4794 -0.9089 25 1 1.1344 1.4117 -3.4724 26 1 1.7876 -2.5844 0.3173 27 1 0.4454 -2.0723 1.3681 28 1 3.2548 -2.8234 2.2968 29 1 1.7959 -3.8297 2.4689 30 1 0.0265 -3.0504 3.9850 31 1 0.1060 -1.5721 4.7429 32 1 2.0178 -0.0908 4.5372 33 1 3.3863 -0.6082 3.5223 34 1 1.6843 1.9635 1.4439 35 1 1.8753 2.0317 3.2125 36 1 3.2299 1.4935 2.1913 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252684319.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:40 Heat of formation + Delta-G solvation = -2.019390 kcal Electronic energy + Delta-G solvation = -15381.503590 eV Core-core repulsion = 13093.103097 eV Total energy + Delta-G solvation = -2288.400493 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.91799 -35.16734 -32.69932 -31.52766 -30.01620 -27.40270 -26.33019 -25.06281 -23.06047 -21.16164 -19.70568 -18.00177 -16.07513 -15.55544 -15.37648 -14.51875 -14.33455 -14.05120 -13.52037 -13.13263 -12.59850 -11.97021 -11.72529 -11.50392 -11.29380 -11.23332 -11.11989 -10.88156 -10.65004 -10.48412 -10.39804 -10.04948 -10.00034 -9.65194 -9.23490 -8.77152 -8.39651 -8.19023 -6.85452 -5.94003 -3.91904 3.36844 3.42924 3.46061 4.49877 4.72142 5.11960 5.20884 5.30430 5.40003 5.54657 5.81230 5.99959 6.12656 6.16578 6.24188 6.30070 6.40564 6.41606 6.59235 6.79395 6.81045 6.91054 6.98255 7.01759 7.05112 7.28316 7.37528 7.62349 7.66182 7.79644 7.95890 8.30524 8.56660 8.81122 9.14083 9.70622 11.15897 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041156 B = 0.009772 C = 0.008817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.177916 B = 2864.533351 C = 3175.082037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.207 3.793 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.060 0.940 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.889 3.111 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.526 5.526 13 C 0.070 3.930 14 C -0.111 4.111 15 C 0.091 3.909 16 H 0.023 0.977 17 N -0.840 5.840 18 C -0.102 4.102 19 C 0.087 3.913 20 H 0.045 0.955 21 C -0.147 4.147 22 H 0.031 0.969 23 H 0.012 0.988 24 H 0.064 0.936 25 H 0.259 0.741 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.335 0.665 31 H 0.334 0.666 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.238 -4.288 11.482 12.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.100 3.900 3 H 0.070 0.930 4 C -0.537 4.537 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.251 5.251 13 C -0.059 4.059 14 C -0.149 4.149 15 C -0.020 4.020 16 H 0.041 0.959 17 N -0.370 5.370 18 C -0.141 4.141 19 C -0.022 4.022 20 H 0.063 0.937 21 C -0.204 4.204 22 H 0.050 0.950 23 H 0.031 0.969 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.209 -3.795 10.603 11.263 hybrid contribution -0.563 -0.960 0.063 1.115 sum -0.354 -4.755 10.666 11.683 Atomic orbital electron populations 1.22305 1.01483 0.98820 0.99596 1.19354 0.89112 0.95492 0.86012 0.92995 1.21130 1.34605 1.08009 0.89983 0.92141 1.24911 0.95686 0.94681 0.98844 1.69971 1.45802 1.13919 1.23510 0.86656 0.78587 0.80133 0.82888 1.20822 1.21489 1.20005 1.62274 1.59602 1.01300 1.01931 1.21794 0.97073 0.90422 0.96563 1.21671 1.00977 0.97464 0.94794 1.21381 0.87413 0.96754 0.96425 0.95949 1.58674 1.13091 1.18516 1.46713 1.21654 1.00595 0.94090 0.97734 1.21341 0.97511 0.92706 0.90604 0.93704 1.21921 1.01731 0.95999 1.00787 0.95031 0.96872 0.91674 0.93155 0.90791 0.94477 0.91488 0.93049 0.85279 0.85369 0.93079 0.91366 0.91656 0.94030 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 8.37 37.16 0.31 -3.71 16 2 C 0.21 5.26 1.82 -68.86 -0.13 5.14 16 3 H 0.05 1.46 5.85 -51.93 -0.30 1.15 16 4 C -0.50 -13.87 7.90 -34.44 -0.27 -14.14 16 5 H 0.06 1.69 6.59 -52.49 -0.35 1.34 16 6 C 0.06 1.68 5.18 -17.82 -0.09 1.59 16 7 N -0.89 -26.02 12.17 55.43 0.67 -25.35 16 8 Si 0.89 21.71 29.55 -169.99 -5.02 16.69 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.53 -11.50 4.47 -220.13 -0.98 -12.48 16 13 C 0.07 1.41 4.51 -3.83 -0.02 1.39 16 14 C -0.11 -1.79 5.76 -26.65 -0.15 -1.94 16 15 C 0.09 1.30 3.60 -67.59 -0.24 1.06 16 16 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 17 N -0.84 -11.01 7.93 -4.56 -0.04 -11.05 16 18 C -0.10 -1.59 5.01 -26.65 -0.13 -1.72 16 19 C 0.09 1.65 1.86 -67.72 -0.13 1.52 16 20 H 0.05 0.91 6.33 -51.93 -0.33 0.58 16 21 C -0.15 -2.69 8.78 37.16 0.33 -2.36 16 22 H 0.03 0.76 6.40 -51.93 -0.33 0.43 16 23 H 0.01 0.29 6.77 -51.93 -0.35 -0.06 16 24 H 0.06 1.76 6.87 -51.93 -0.36 1.40 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.07 1.64 6.26 -51.93 -0.33 1.31 16 27 H 0.04 0.78 6.11 -51.93 -0.32 0.46 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.34 3.82 9.04 -39.29 -0.36 3.47 16 31 H 0.33 3.78 9.00 -39.29 -0.35 3.43 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.34 6.21 -51.93 -0.32 1.02 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 268.96 15.07 4.05 4.05 Total: -1.00 -28.96 268.96 -7.63 -36.59 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.79 Total: 4.72 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -0.53 Total: -13.18 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.35 Total: -48.88 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.96 -7.63 -36.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252684319.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.572 kcal (2) G-P(sol) polarization free energy of solvation -28.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds