Wall clock time and date at job start Mon Mar 30 2020 03:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47046 * 2 1 4 4 C 1.50702 * 109.46828 * 239.99999 * 2 1 3 5 5 H 1.07997 * 120.00467 * 245.45082 * 4 2 1 6 6 C 1.37882 * 119.99783 * 65.45183 * 4 2 1 7 7 N 1.31514 * 119.99912 * 9.73699 * 6 4 2 8 8 Si 1.86800 * 120.00064 * 189.73294 * 6 4 2 9 9 H 1.48498 * 109.47036 * 84.99456 * 8 6 4 10 10 H 1.48495 * 109.47245 * 204.99743 * 8 6 4 11 11 H 1.48505 * 109.47112 * 324.99581 * 8 6 4 12 12 N 1.46896 * 109.47048 * 120.00583 * 2 1 3 13 13 C 1.46844 * 111.00422 * 58.95049 * 12 2 1 14 14 C 1.53042 * 109.52553 * 174.15953 * 13 12 2 15 15 C 1.53115 * 109.27506 * 59.17929 * 14 13 12 16 16 H 1.09003 * 109.52591 * 182.37893 * 15 14 13 17 17 N 1.46906 * 109.52668 * 62.25399 * 15 14 13 18 18 C 1.53119 * 109.16256 * 302.34596 * 15 14 13 19 19 C 1.46853 * 110.99948 * 294.74029 * 12 2 1 20 20 H 1.09000 * 109.46117 * 65.82374 * 19 12 2 21 21 C 1.53006 * 109.46035 * 305.84806 * 19 12 2 22 22 H 1.09004 * 109.47113 * 182.20098 * 1 2 3 23 23 H 1.09004 * 109.46516 * 302.19633 * 1 2 3 24 24 H 1.08993 * 109.47040 * 62.19413 * 1 2 3 25 25 H 0.97003 * 119.99708 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.45958 * 54.14367 * 13 12 2 27 27 H 1.09002 * 109.45296 * 294.17056 * 13 12 2 28 28 H 1.08996 * 109.50031 * 299.23883 * 14 13 12 29 29 H 1.08997 * 109.50270 * 179.11715 * 14 13 12 30 30 H 1.00899 * 110.99781 * 59.99082 * 17 15 14 31 31 H 1.00897 * 111.00284 * 183.95891 * 17 15 14 32 32 H 1.09005 * 109.50442 * 177.59814 * 18 15 14 33 33 H 1.08998 * 109.50596 * 297.71032 * 18 15 14 34 34 H 1.09001 * 109.46849 * 59.99801 * 21 19 12 35 35 H 1.08998 * 109.46642 * 180.02562 * 21 19 12 36 36 H 1.08997 * 109.47019 * 299.99643 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5787 -1.6370 -1.1340 6 6 1.7943 -0.1774 -2.4797 7 7 1.3022 1.0368 -2.5936 8 14 2.1711 -1.1799 -4.0102 9 1 1.0163 -2.0599 -4.3221 10 1 2.4188 -0.2646 -5.1529 11 1 3.3777 -2.0123 -3.7721 12 7 2.0197 -0.6926 1.1993 13 6 1.5285 -2.0757 1.2458 14 6 2.1726 -2.8078 2.4254 15 6 1.8226 -2.0782 3.7252 16 1 2.3139 -2.5718 4.5637 17 7 0.3675 -2.1026 3.9255 18 6 2.3020 -0.6270 3.6317 19 6 1.6542 0.0419 2.4173 20 1 0.5704 0.0352 2.5340 21 6 2.1462 1.4866 2.3084 22 1 -0.3633 -1.0269 0.0395 23 1 -0.3632 0.5476 0.8697 24 1 -0.3633 0.4794 -0.9089 25 1 1.1344 1.4117 -3.4724 26 1 1.7876 -2.5844 0.3173 27 1 0.4454 -2.0723 1.3681 28 1 3.2548 -2.8234 2.2968 29 1 1.7959 -3.8297 2.4689 30 1 0.0265 -3.0504 3.9850 31 1 0.1060 -1.5721 4.7429 32 1 2.0178 -0.0908 4.5372 33 1 3.3863 -0.6082 3.5223 34 1 1.6843 1.9635 1.4439 35 1 1.8753 2.0317 3.2125 36 1 3.2299 1.4935 2.1913 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252684319.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:40 Heat of formation + Delta-G solvation = -23.007303 kcal Electronic energy + Delta-G solvation = -15382.413695 eV Core-core repulsion = 13093.103097 eV Total energy + Delta-G solvation = -2289.310597 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.43218 -36.71924 -34.53665 -33.13485 -31.56041 -28.99600 -27.77343 -27.20606 -24.64759 -22.79605 -21.24298 -19.51350 -18.15824 -17.08671 -16.65294 -16.19894 -15.89636 -15.43336 -15.19278 -14.75318 -14.17921 -13.90772 -13.34928 -13.08685 -12.89956 -12.80498 -12.67473 -12.60996 -12.49080 -12.28965 -12.10353 -11.85824 -11.65102 -11.18958 -10.88300 -10.79138 -10.32941 -9.44384 -8.58198 -8.09860 -6.14629 1.42021 1.42666 1.52337 2.45253 3.20757 3.46858 3.77077 3.97966 4.07329 4.27001 4.43543 4.59179 4.70432 4.77783 4.78795 4.89642 4.90193 5.02233 5.05403 5.09442 5.14548 5.20909 5.32194 5.40068 5.42253 5.53944 5.65833 5.80912 5.82993 6.28031 6.40111 6.67766 6.76381 6.96772 7.01727 7.52485 8.99415 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041156 B = 0.009772 C = 0.008817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.177916 B = 2864.533351 C = 3175.082037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.212 3.788 3 H 0.022 0.978 4 C -0.513 4.513 5 H 0.054 0.946 6 C 0.012 3.988 7 N -0.922 5.922 8 Si 0.952 3.048 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.535 5.535 13 C 0.074 3.926 14 C -0.106 4.106 15 C 0.097 3.903 16 H 0.051 0.949 17 N -0.852 5.852 18 C -0.098 4.098 19 C 0.086 3.914 20 H 0.033 0.967 21 C -0.142 4.142 22 H 0.031 0.969 23 H 0.025 0.975 24 H 0.036 0.964 25 H 0.260 0.740 26 H 0.046 0.954 27 H 0.027 0.973 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.346 0.654 31 H 0.347 0.653 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 -5.457 13.065 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.104 3.896 3 H 0.039 0.961 4 C -0.552 4.552 5 H 0.072 0.928 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.778 3.222 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.194 1.194 12 N -0.259 5.259 13 C -0.055 4.055 14 C -0.144 4.144 15 C -0.014 4.014 16 H 0.069 0.931 17 N -0.385 5.385 18 C -0.136 4.136 19 C -0.022 4.022 20 H 0.051 0.949 21 C -0.200 4.200 22 H 0.050 0.950 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.462 -4.978 12.210 13.194 hybrid contribution -0.654 -0.570 -0.392 0.953 sum -0.192 -5.549 11.818 13.057 Atomic orbital electron populations 1.22079 1.01180 0.98493 0.98629 1.19085 0.89141 0.94045 0.87294 0.96063 1.21412 1.34583 1.07857 0.91316 0.92814 1.25672 0.95669 0.95573 1.01768 1.70091 1.46738 1.15232 1.24132 0.85661 0.78594 0.78706 0.79226 1.20208 1.21085 1.19418 1.62215 1.59686 1.02144 1.01900 1.21736 0.96749 0.89637 0.97332 1.21625 1.00440 0.98280 0.94037 1.21278 0.88414 0.95656 0.96056 0.93107 1.58590 1.12408 1.19692 1.47773 1.21626 1.00159 0.95049 0.96748 1.21444 0.97187 0.92961 0.90658 0.94878 1.21877 1.01086 0.96079 1.00948 0.95013 0.95645 0.94465 0.93140 0.93597 0.95504 0.91796 0.90965 0.84052 0.83968 0.90413 0.91567 0.94836 0.90791 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.31 8.37 71.98 0.60 -6.71 16 2 C 0.21 11.08 1.82 44.17 0.08 11.16 16 3 H 0.02 1.25 5.85 -2.39 -0.01 1.24 16 4 C -0.51 -29.18 7.90 25.60 0.20 -28.97 16 5 H 0.05 3.06 6.59 -2.91 -0.02 3.04 16 6 C 0.01 0.66 5.18 84.66 0.44 1.10 16 7 N -0.92 -55.00 12.17 21.45 0.26 -54.74 16 8 Si 0.95 45.01 29.55 68.60 2.03 47.04 16 9 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 10 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.53 -23.41 4.47 -850.36 -3.80 -27.21 16 13 C 0.07 2.94 4.51 86.33 0.39 3.33 16 14 C -0.11 -3.17 5.76 30.65 0.18 -2.99 16 15 C 0.10 2.43 3.60 44.99 0.16 2.60 16 16 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 17 N -0.85 -19.61 7.93 -168.34 -1.33 -20.94 16 18 C -0.10 -2.73 5.01 30.65 0.15 -2.58 16 19 C 0.09 3.14 1.86 44.94 0.08 3.23 16 20 H 0.03 1.30 6.33 -2.39 -0.02 1.28 16 21 C -0.14 -5.13 8.78 71.98 0.63 -4.50 16 22 H 0.03 1.55 6.40 -2.38 -0.02 1.54 16 23 H 0.02 1.17 6.77 -2.38 -0.02 1.15 16 24 H 0.04 2.05 6.87 -2.39 -0.02 2.04 16 25 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 26 H 0.05 2.06 6.26 -2.39 -0.01 2.04 16 27 H 0.03 1.12 6.11 -2.39 -0.01 1.10 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.35 6.75 9.04 -89.69 -0.81 5.94 16 31 H 0.35 6.59 9.00 -89.70 -0.81 5.78 16 32 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.03 1.40 6.21 -2.39 -0.01 1.38 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -62.99 268.96 -0.47 -63.46 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -0.54 Total: 16.73 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 2.92 Total: -24.34 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -4.87 Total: -102.89 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -62.99 -0.47 -63.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252684319.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.452 kcal (2) G-P(sol) polarization free energy of solvation -62.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds