Wall clock time and date at job start Mon Mar 30 2020 03:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.45169 * 2 1 4 4 C 1.53036 * 109.46534 * 240.02703 * 2 1 3 5 5 C 1.53124 * 109.27829 * 180.80178 * 4 2 1 6 6 C 1.50695 * 109.57687 * 297.71644 * 5 4 2 7 7 H 1.08001 * 120.00206 * 118.25740 * 6 5 4 8 8 C 1.37882 * 120.00228 * 298.26348 * 6 5 4 9 9 N 1.31513 * 119.99865 * 2.51052 * 8 6 5 10 10 Si 1.86804 * 120.00111 * 182.51012 * 8 6 5 11 11 H 1.48490 * 109.47204 * 89.99951 * 10 8 6 12 12 H 1.48496 * 109.46921 * 210.00276 * 10 8 6 13 13 H 1.48497 * 109.46897 * 329.99613 * 10 8 6 14 14 C 1.53001 * 109.52141 * 177.56065 * 5 4 2 15 15 N 1.46901 * 109.47381 * 174.94295 * 14 5 4 16 16 C 1.53114 * 109.15853 * 57.65533 * 5 4 2 17 17 C 1.53031 * 109.28137 * 302.34232 * 16 5 4 18 18 N 1.46842 * 109.46529 * 119.97175 * 2 1 3 19 19 C 1.46897 * 111.00092 * 305.85781 * 18 2 1 20 20 H 1.08996 * 109.46979 * 300.02341 * 1 2 3 21 21 H 1.08993 * 109.46859 * 60.03068 * 1 2 3 22 22 H 1.09002 * 109.46624 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.50116 * 60.86213 * 4 2 1 24 24 H 1.08990 * 109.50421 * 300.74328 * 4 2 1 25 25 H 0.96999 * 120.00112 * 180.02562 * 9 8 6 26 26 H 1.09003 * 109.47265 * 54.93989 * 14 5 4 27 27 H 1.09004 * 109.46952 * 294.94508 * 14 5 4 28 28 H 1.00903 * 110.99462 * 56.04431 * 15 14 5 29 29 H 1.00895 * 110.99899 * 179.97438 * 15 14 5 30 30 H 1.09003 * 109.50213 * 62.28837 * 16 5 4 31 31 H 1.09007 * 109.50056 * 182.36081 * 16 5 4 32 32 H 1.08997 * 109.46567 * 179.19734 * 17 16 5 33 33 H 1.09000 * 109.46443 * 299.17893 * 17 16 5 34 34 H 1.08999 * 109.47230 * 291.83421 * 19 18 2 35 35 H 1.09006 * 109.47241 * 51.83350 * 19 18 2 36 36 H 1.09002 * 109.47269 * 171.83123 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7209 -1.2499 5 6 3.5711 -0.7359 -1.2355 6 6 4.0904 0.6780 -1.2800 7 1 4.6847 1.0610 -0.4636 8 6 3.8067 1.4829 -2.3630 9 7 3.0420 1.0334 -3.3340 10 14 4.5085 3.2119 -2.4510 11 1 5.8252 3.1773 -3.1367 12 1 3.5780 4.0857 -3.2098 13 1 4.6801 3.7470 -1.0765 14 6 4.0862 -1.5082 -2.4517 15 7 5.5516 -1.4196 -2.5034 16 6 4.0548 -1.4186 0.0468 17 6 3.4866 -0.6776 1.2591 18 7 2.0193 -0.6917 1.1993 19 6 1.4373 -0.1105 2.4165 20 1 -0.3633 0.5142 0.8897 21 1 -0.3633 0.5133 -0.8902 22 1 -0.3633 -1.0277 0.0005 23 1 1.6895 -0.1981 -2.1399 24 1 1.6661 -1.7446 -1.2576 25 1 2.8428 1.5995 -4.0960 26 1 3.6640 -1.0790 -3.3603 27 1 3.7881 -2.5536 -2.3712 28 1 5.9644 -1.7522 -1.6448 29 1 5.9165 -1.9226 -3.2983 30 1 3.7126 -2.4534 0.0594 31 1 5.1441 -1.3951 0.0828 32 1 3.8176 -1.1697 2.1736 33 1 3.8402 0.3535 1.2531 34 1 1.8278 0.8969 2.5607 35 1 0.3527 -0.0689 2.3166 36 1 1.6996 -0.7283 3.2754 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261287318.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:34 Heat of formation + Delta-G solvation = 2.350709 kcal Electronic energy + Delta-G solvation = -15679.508485 eV Core-core repulsion = 13391.297494 eV Total energy + Delta-G solvation = -2288.210991 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.66767 -35.13246 -32.00918 -31.28908 -30.79392 -26.87651 -25.62697 -24.63488 -22.81059 -21.65520 -19.17607 -18.49776 -15.54616 -15.11776 -14.73712 -14.57962 -14.16085 -13.71061 -13.30864 -13.04399 -12.51492 -12.37150 -11.55557 -11.38201 -11.34268 -10.99596 -10.89711 -10.88332 -10.79481 -10.45039 -10.28192 -9.95548 -9.73303 -9.04423 -8.82753 -8.60636 -8.17461 -7.44760 -7.28133 -5.79793 -3.82122 3.40460 3.46236 3.49177 4.57869 4.75794 5.49463 5.69234 5.76469 5.82692 5.95538 6.02106 6.11270 6.18460 6.27923 6.31759 6.42952 6.58000 6.67072 6.69741 6.78711 6.86040 7.00643 7.06854 7.25050 7.31412 7.53322 7.75559 7.79785 8.01642 8.06211 8.29678 8.41660 8.61994 8.71062 9.11045 9.79396 11.23487 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.014312 C = 0.012038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.171630 B = 1955.873580 C = 2325.323889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.093 3.907 3 H 0.050 0.950 4 C -0.093 4.093 5 C 0.073 3.927 6 C -0.466 4.466 7 H 0.047 0.953 8 C 0.072 3.928 9 N -0.893 5.893 10 Si 0.883 3.117 11 H -0.283 1.283 12 H -0.292 1.292 13 H -0.281 1.281 14 C 0.079 3.921 15 N -0.825 5.825 16 C -0.102 4.102 17 C 0.069 3.931 18 N -0.541 5.541 19 C 0.021 3.979 20 H 0.043 0.957 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.096 0.904 24 H 0.021 0.979 25 H 0.255 0.745 26 H 0.097 0.903 27 H -0.026 1.026 28 H 0.318 0.682 29 H 0.312 0.688 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.017 0.983 35 H 0.065 0.935 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.915 -3.334 5.644 6.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.014 4.014 3 H 0.068 0.932 4 C -0.131 4.131 5 C 0.072 3.928 6 C -0.505 4.505 7 H 0.065 0.935 8 C -0.127 4.127 9 N -0.533 5.533 10 Si 0.713 3.287 11 H -0.209 1.209 12 H -0.218 1.218 13 H -0.206 1.206 14 C -0.052 4.052 15 N -0.352 5.352 16 C -0.140 4.140 17 C -0.059 4.059 18 N -0.266 5.266 19 C -0.128 4.128 20 H 0.062 0.938 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.115 0.885 24 H 0.040 0.960 25 H 0.065 0.935 26 H 0.115 0.885 27 H -0.008 1.008 28 H 0.130 0.870 29 H 0.122 0.878 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.035 0.965 35 H 0.084 0.916 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.265 -2.954 5.361 6.526 hybrid contribution 0.693 0.785 0.111 1.052 sum -1.572 -2.169 5.472 6.092 Atomic orbital electron populations 1.21949 0.96713 1.01120 1.00459 1.21536 0.92602 0.97068 0.90210 0.93184 1.21588 0.97842 0.96856 0.96853 1.18194 0.91514 0.94501 0.88602 1.20760 1.30668 0.95521 1.03518 0.93458 1.24716 0.94914 0.97444 0.95674 1.69731 1.37811 1.36151 1.09620 0.86751 0.79057 0.85350 0.77578 1.20896 1.21828 1.20626 1.21904 0.86415 0.93048 1.03823 1.58636 1.07507 1.63636 1.05392 1.21638 0.98470 0.97506 0.96421 1.21919 0.86962 0.99501 0.97485 1.62050 1.07640 1.54955 1.01983 1.22387 1.00103 0.96965 0.93310 0.93823 0.92589 0.92936 0.88548 0.95994 0.93507 0.88451 1.00844 0.86987 0.87785 0.94364 0.93085 0.93487 0.94252 0.96491 0.91619 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.79 37.16 0.33 -2.26 16 2 C 0.09 1.96 2.24 -67.73 -0.15 1.81 16 3 H 0.05 1.20 7.31 -51.93 -0.38 0.82 16 4 C -0.09 -2.14 3.99 -26.65 -0.11 -2.25 16 5 C 0.07 1.70 0.33 -155.54 -0.05 1.64 16 6 C -0.47 -12.10 5.68 -34.44 -0.20 -12.29 16 7 H 0.05 1.28 6.82 -52.49 -0.36 0.92 16 8 C 0.07 1.92 5.15 -17.82 -0.09 1.83 16 9 N -0.89 -24.24 9.42 55.43 0.52 -23.72 16 10 Si 0.88 21.61 29.54 -169.99 -5.02 16.59 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.08 1.82 5.44 -3.82 -0.02 1.80 16 15 N -0.83 -17.49 9.05 -10.37 -0.09 -17.58 16 16 C -0.10 -2.14 4.56 -26.66 -0.12 -2.26 16 17 C 0.07 1.37 5.25 -3.83 -0.02 1.35 16 18 N -0.54 -10.53 4.75 -234.93 -1.11 -11.64 16 19 C 0.02 0.34 9.30 60.06 0.56 0.90 16 20 H 0.04 0.69 6.15 -51.93 -0.32 0.37 16 21 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 26 H 0.10 2.54 6.21 -51.93 -0.32 2.22 16 27 H -0.03 -0.59 8.14 -51.93 -0.42 -1.01 16 28 H 0.32 6.23 7.32 -39.29 -0.29 5.94 16 29 H 0.31 5.85 9.08 -39.29 -0.36 5.49 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 1.04 6.81 -51.92 -0.35 0.68 16 32 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 33 H 0.04 0.85 6.75 -51.93 -0.35 0.50 16 34 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.98 5.75 -51.93 -0.30 0.68 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 266.49 15.07 4.02 4.02 Total: -1.00 -27.16 266.49 -7.42 -34.59 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.86 Total: 7.47 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 0.13 Total: -9.72 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.69 Total: -52.94 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.16 -7.42 -34.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287318.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.938 kcal (2) G-P(sol) polarization free energy of solvation -27.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds