Wall clock time and date at job start Mon Mar 30 2020 03:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46270 * 2 1 4 4 C 1.53038 * 109.45447 * 240.02504 * 2 1 3 5 5 C 1.53122 * 109.31032 * 180.83419 * 4 2 1 6 6 C 1.50697 * 109.55630 * 177.51761 * 5 4 2 7 7 H 1.08001 * 119.99675 * 114.85203 * 6 5 4 8 8 C 1.37871 * 120.00134 * 294.86322 * 6 5 4 9 9 N 1.31515 * 119.99880 * 202.34951 * 8 6 5 10 10 Si 1.86803 * 120.00099 * 22.34230 * 8 6 5 11 11 H 1.48500 * 109.46883 * 84.74239 * 10 8 6 12 12 H 1.48498 * 109.46966 * 204.73835 * 10 8 6 13 13 H 1.48495 * 109.46845 * 324.73897 * 10 8 6 14 14 C 1.53004 * 109.49062 * 297.71194 * 5 4 2 15 15 N 1.46894 * 109.47165 * 178.96409 * 14 5 4 16 16 C 1.53120 * 109.16137 * 57.59314 * 5 4 2 17 17 C 1.53041 * 109.30966 * 302.40743 * 16 5 4 18 18 N 1.46845 * 109.52490 * 59.15738 * 17 16 5 19 19 C 1.46898 * 110.99784 * 174.15947 * 18 17 16 20 20 H 1.09004 * 109.46900 * 300.02406 * 1 2 3 21 21 H 1.08998 * 109.47004 * 60.01984 * 1 2 3 22 22 H 1.08990 * 109.47514 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.49801 * 300.75070 * 4 2 1 24 24 H 1.08998 * 109.49971 * 60.83239 * 4 2 1 25 25 H 0.97000 * 120.00308 * 179.97438 * 9 8 6 26 26 H 1.09006 * 109.46757 * 298.96217 * 14 5 4 27 27 H 1.08990 * 109.47162 * 58.95673 * 14 5 4 28 28 H 1.00906 * 111.00093 * 65.13544 * 15 14 5 29 29 H 1.00895 * 111.00358 * 189.09191 * 15 14 5 30 30 H 1.08995 * 109.50360 * 182.44177 * 16 5 4 31 31 H 1.09004 * 109.50205 * 62.36570 * 16 5 4 32 32 H 1.09004 * 109.46152 * 179.17587 * 17 16 5 33 33 H 1.09002 * 109.45810 * 299.14105 * 17 16 5 34 34 H 1.09003 * 109.47104 * 63.95398 * 19 18 17 35 35 H 1.09009 * 109.46999 * 183.95476 * 19 18 17 36 36 H 1.08997 * 109.47346 * 303.95337 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7210 -1.2500 5 6 3.5708 -0.7373 -1.2362 6 6 4.0779 -1.4990 -2.4335 7 1 4.6415 -0.9875 -3.1998 8 6 3.8223 -2.8487 -2.5508 9 7 4.5900 -3.5998 -3.3099 10 14 2.3856 -3.6106 -1.6316 11 1 1.1440 -3.4454 -2.4293 12 1 2.6467 -5.0565 -1.4160 13 1 2.2241 -2.9356 -0.3188 14 6 4.0970 0.6987 -1.2815 15 7 5.5654 0.6835 -1.2432 16 6 4.0546 -1.4192 0.0466 17 6 3.4864 -0.6780 1.2590 18 7 2.0192 -0.6918 1.1994 19 6 1.4375 -0.1106 2.4166 20 1 -0.3633 0.5142 0.8898 21 1 -0.3633 0.5135 -0.8901 22 1 -0.3634 -1.0275 0.0005 23 1 1.6655 -1.7447 -1.2575 24 1 1.6887 -0.1985 -2.1399 25 1 4.4104 -4.5495 -3.3921 26 1 3.7625 1.1794 -2.2009 27 1 3.7168 1.2522 -0.4231 28 1 5.9443 0.2490 -2.0714 29 1 5.9337 1.6151 -1.1229 30 1 5.1436 -1.3953 0.0829 31 1 3.7126 -2.4542 0.0597 32 1 3.8174 -1.1703 2.1735 33 1 3.8405 0.3529 1.2530 34 1 1.7161 0.9410 2.4861 35 1 0.3515 -0.1969 2.3773 36 1 1.8130 -0.6444 3.2895 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261287323.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:42 Heat of formation + Delta-G solvation = 20.958157 kcal Electronic energy + Delta-G solvation = -15770.398192 eV Core-core repulsion = 13482.994081 eV Total energy + Delta-G solvation = -2287.404112 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.24477 -35.22295 -32.34222 -31.78830 -31.07219 -27.43077 -25.99324 -24.28704 -23.55422 -21.79427 -19.98461 -18.31280 -16.30770 -15.13372 -14.87016 -14.79356 -14.58904 -14.19937 -13.80012 -12.98364 -12.75800 -12.43943 -12.28505 -11.75229 -11.60772 -11.42757 -11.31891 -11.08400 -10.83942 -10.82744 -10.14681 -9.90493 -9.82469 -9.38277 -8.86675 -8.44468 -8.18669 -7.73938 -7.54110 -6.05535 -3.95078 3.42809 3.55518 3.64510 4.45392 4.55737 5.19146 5.41130 5.49193 5.56192 5.58725 5.73482 5.81169 5.94430 5.96610 6.05642 6.17921 6.25217 6.30126 6.37619 6.42619 6.46756 6.55272 6.67903 6.88917 6.95173 7.24422 7.37428 7.55772 7.73464 7.81541 7.94267 8.08375 8.30339 8.59532 9.00235 9.64830 11.06863 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027480 B = 0.016117 C = 0.012665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.694507 B = 1736.908645 C = 2210.266773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.080 3.920 3 H 0.034 0.966 4 C -0.115 4.115 5 C 0.054 3.946 6 C -0.512 4.512 7 H 0.066 0.934 8 C 0.081 3.919 9 N -0.888 5.888 10 Si 0.845 3.155 11 H -0.289 1.289 12 H -0.307 1.307 13 H -0.209 1.209 14 C 0.085 3.915 15 N -0.841 5.841 16 C -0.101 4.101 17 C 0.058 3.942 18 N -0.536 5.536 19 C 0.023 3.977 20 H 0.049 0.951 21 H 0.055 0.945 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.261 0.739 26 H 0.010 0.990 27 H 0.044 0.956 28 H 0.350 0.650 29 H 0.316 0.684 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.028 0.972 34 H 0.015 0.985 35 H 0.065 0.935 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.132 7.697 8.001 12.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 H 0.052 0.948 4 C -0.153 4.153 5 C 0.053 3.947 6 C -0.549 4.549 7 H 0.084 0.916 8 C -0.122 4.122 9 N -0.524 5.524 10 Si 0.675 3.325 11 H -0.216 1.216 12 H -0.236 1.236 13 H -0.133 1.133 14 C -0.045 4.045 15 N -0.370 5.370 16 C -0.139 4.139 17 C -0.070 4.070 18 N -0.261 5.261 19 C -0.125 4.125 20 H 0.068 0.932 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.028 0.972 27 H 0.062 0.938 28 H 0.164 0.836 29 H 0.126 0.874 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.083 0.917 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.314 6.577 8.539 12.017 hybrid contribution -0.665 0.880 -0.526 1.222 sum -5.979 7.457 8.013 12.472 Atomic orbital electron populations 1.21955 0.95783 1.02075 1.00764 1.21739 0.94035 0.95388 0.91652 0.94821 1.22288 0.99168 0.99957 0.93919 1.18436 0.89729 0.91803 0.94746 1.20666 1.35324 0.93197 1.05729 0.91586 1.24926 0.95700 0.96834 0.94702 1.70062 1.35778 1.05806 1.40740 0.87897 0.83543 0.77055 0.84015 1.21641 1.23559 1.13267 1.21732 0.87764 0.98115 0.96920 1.58648 1.07363 1.22914 1.48077 1.21964 1.00395 0.98998 0.92531 1.22217 0.85930 0.98954 0.99854 1.61950 1.08319 1.54544 1.01336 1.22387 1.00211 0.96616 0.93315 0.93232 0.92563 0.92183 0.91858 0.92590 0.92896 0.97151 0.93772 0.83552 0.87416 0.90922 0.92107 0.92576 0.95384 0.96619 0.91668 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.76 37.16 0.33 -1.95 16 2 C 0.08 1.44 2.20 -67.72 -0.15 1.29 16 3 H 0.03 0.60 6.49 -51.93 -0.34 0.26 16 4 C -0.12 -2.46 3.48 -26.65 -0.09 -2.55 16 5 C 0.05 1.22 0.33 -155.53 -0.05 1.17 16 6 C -0.51 -13.79 7.95 -34.44 -0.27 -14.06 16 7 H 0.07 1.92 7.33 -52.49 -0.38 1.53 16 8 C 0.08 2.31 5.22 -17.82 -0.09 2.22 16 9 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 10 Si 0.84 21.31 23.16 -169.99 -3.94 17.38 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.31 -8.02 7.11 56.52 0.40 -7.62 16 13 H -0.21 -4.97 4.39 56.52 0.25 -4.72 16 14 C 0.09 1.69 5.09 -3.83 -0.02 1.68 16 15 N -0.84 -15.73 8.68 -10.37 -0.09 -15.82 16 16 C -0.10 -2.23 4.20 -26.65 -0.11 -2.35 16 17 C 0.06 1.09 5.22 -3.83 -0.02 1.07 16 18 N -0.54 -9.73 4.61 -234.92 -1.08 -10.81 16 19 C 0.02 0.34 9.06 60.06 0.54 0.88 16 20 H 0.05 0.66 6.32 -51.93 -0.33 0.33 16 21 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.06 1.46 2.50 -51.93 -0.13 1.33 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.04 0.83 4.92 -51.93 -0.26 0.57 16 28 H 0.35 7.05 7.78 -39.29 -0.31 6.74 16 29 H 0.32 4.90 9.08 -39.29 -0.36 4.54 16 30 H 0.07 1.68 7.52 -51.93 -0.39 1.29 16 31 H 0.06 1.45 4.03 -51.93 -0.21 1.24 16 32 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 33 H 0.03 0.52 6.54 -51.93 -0.34 0.18 16 34 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.06 0.86 6.20 -51.92 -0.32 0.54 16 36 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 254.42 15.07 3.83 3.83 Total: -1.00 -29.44 254.42 -6.04 -35.48 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -5.60 Total: 8.70 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 0.06 Total: -12.61 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.40 Total: -52.78 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -3.94 Total: 17.38 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.44 -6.04 -35.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287323.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.440 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds