Wall clock time and date at job start Mon Mar 30 2020 02:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47312 * 2 1 4 4 H 1.09002 * 109.46968 * 179.80248 * 3 2 1 5 5 C 1.50700 * 109.47109 * 299.80700 * 3 2 1 6 6 H 1.07994 * 120.00481 * 120.00127 * 5 3 2 7 7 C 1.37880 * 119.99858 * 299.99426 * 5 3 2 8 8 N 1.31514 * 119.99937 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00254 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46857 * 90.00296 * 9 7 5 11 11 H 1.48495 * 109.47444 * 210.00300 * 9 7 5 12 12 H 1.48501 * 109.46873 * 330.00873 * 9 7 5 13 13 N 1.46904 * 109.46944 * 59.80524 * 3 2 1 14 14 C 1.46893 * 111.00012 * 85.67077 * 13 3 2 15 15 C 1.53005 * 109.47287 * 176.24694 * 14 13 3 16 16 H 1.09004 * 112.78660 * 56.29795 * 15 14 13 17 17 C 1.53508 * 113.48027 * 187.11312 * 15 14 13 18 18 C 1.53510 * 83.57498 * 140.78680 * 17 15 14 19 19 N 1.47474 * 87.93377 * 333.97578 * 18 17 15 20 20 C 1.46903 * 111.00009 * 138.70428 * 19 18 17 21 21 H 1.08997 * 109.47608 * 175.62171 * 1 2 3 22 22 H 1.09003 * 109.47344 * 295.62380 * 1 2 3 23 23 H 1.09004 * 109.47271 * 55.61989 * 1 2 3 24 24 H 1.09003 * 109.47279 * 239.99727 * 2 1 3 25 25 H 1.09001 * 109.46832 * 119.99986 * 2 1 3 26 26 H 0.97002 * 120.00026 * 179.97438 * 8 7 5 27 27 H 1.00904 * 110.99589 * 209.62577 * 13 3 2 28 28 H 1.08994 * 109.47741 * 56.24357 * 14 13 3 29 29 H 1.09003 * 109.46886 * 296.24420 * 14 13 3 30 30 H 1.08995 * 114.17084 * 254.43961 * 17 15 14 31 31 H 1.09003 * 114.16914 * 27.13978 * 17 15 14 32 32 H 1.09006 * 113.47343 * 219.20685 * 18 17 15 33 33 H 1.09005 * 113.47665 * 88.74938 * 18 17 15 34 34 H 1.09005 * 109.46754 * 324.02766 * 20 19 18 35 35 H 1.09002 * 109.47084 * 204.03403 * 20 19 18 36 36 H 1.08995 * 109.47264 * 84.02566 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 0.0035 5 6 1.5416 2.1515 -1.2328 6 1 0.9205 3.0297 -1.1368 7 6 1.8788 1.6791 -2.4835 8 7 2.6349 0.6094 -2.6005 9 14 1.2605 2.5574 -4.0117 10 1 2.2395 3.5990 -4.4142 11 1 1.0993 1.5769 -5.1152 12 1 -0.0488 3.1949 -3.7206 13 7 1.5465 2.1363 1.1971 14 6 2.4351 1.9047 2.3437 15 6 1.9417 2.7160 3.5434 16 1 0.9075 2.4939 3.8067 17 6 2.8996 2.6790 4.7424 18 6 2.5118 4.1581 4.8779 19 7 2.2224 4.1596 3.4318 20 6 0.9956 4.9136 3.1412 21 1 -0.3634 -1.0246 -0.0784 22 1 -0.3634 0.4444 0.9266 23 1 -0.3634 0.5803 -0.8482 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.8718 0.2768 -3.4804 27 1 1.4324 3.1234 1.0216 28 1 3.4479 2.2150 2.0870 29 1 2.4330 0.8444 2.5965 30 1 2.5596 2.0512 5.5660 31 1 3.9433 2.5139 4.4749 32 1 3.3466 4.8023 5.1544 33 1 1.6299 4.3208 5.4975 34 1 0.2751 4.7586 3.9444 35 1 0.5702 4.5664 2.1996 36 1 1.2311 5.9750 3.0642 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712594493.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:27 Heat of formation + Delta-G solvation = 28.729391 kcal Electronic energy + Delta-G solvation = -14737.413346 eV Core-core repulsion = 12450.346220 eV Total energy + Delta-G solvation = -2287.067126 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.96540 -35.98554 -32.53533 -30.80292 -30.37270 -27.53297 -25.33468 -24.02299 -23.08587 -22.12581 -19.41506 -18.91224 -16.51189 -15.86526 -15.15467 -14.70107 -14.56006 -13.87304 -13.36252 -13.11810 -12.96874 -12.38080 -12.02792 -11.75554 -11.61288 -11.33586 -11.12676 -10.90612 -10.82895 -10.59119 -10.36970 -10.26070 -9.84638 -9.58424 -9.30958 -8.75159 -8.65909 -8.41092 -7.13275 -5.96860 -4.01830 3.32133 3.38795 3.42243 4.17452 4.43966 4.60584 4.89776 5.22467 5.34518 5.38440 5.48406 5.60884 5.70071 5.75496 5.82495 5.85580 6.08492 6.22114 6.34330 6.52157 6.60843 6.64385 6.72746 6.90669 7.24965 7.27765 7.41325 7.55472 7.79430 7.84977 7.92097 8.34293 8.48101 8.76498 9.08364 9.62566 11.09142 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038257 B = 0.007873 C = 0.007185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.725174 B = 3555.397797 C = 3896.138989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.216 3.784 4 H -0.001 1.001 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.686 5.686 14 C 0.077 3.923 15 C 0.033 3.967 16 H 0.080 0.920 17 C -0.144 4.144 18 C -0.005 4.005 19 N -0.472 5.472 20 C -0.011 4.011 21 H 0.012 0.988 22 H 0.040 0.960 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.009 0.991 26 H 0.260 0.740 27 H 0.330 0.670 28 H 0.027 0.973 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.030 0.970 35 H 0.078 0.922 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 3.933 11.942 12.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 C 0.108 3.892 4 H 0.017 0.983 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.317 5.317 14 C -0.053 4.053 15 C -0.077 4.077 16 H 0.098 0.902 17 C -0.182 4.182 18 C -0.134 4.134 19 N -0.195 5.195 20 C -0.160 4.160 21 H 0.031 0.969 22 H 0.059 0.941 23 H 0.075 0.925 24 H 0.104 0.896 25 H 0.027 0.973 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.314 3.584 11.450 12.069 hybrid contribution -0.266 0.799 -0.610 1.040 sum -1.581 4.383 10.839 11.798 Atomic orbital electron populations 1.21442 0.97620 0.97305 1.01232 1.21429 0.94924 0.98395 0.99358 1.19118 0.92920 0.91367 0.85801 0.98292 1.21191 1.31411 1.11788 0.90433 0.92476 1.24885 0.95127 0.95018 0.98875 1.69887 1.36836 1.22737 1.23398 0.86593 0.79216 0.79349 0.82826 1.20832 1.21261 1.19917 1.60767 1.49028 1.15721 1.06205 1.21802 0.94771 0.98018 0.90711 1.23509 0.98698 0.89680 0.95787 0.90208 1.23193 1.00897 0.96032 0.98100 1.23764 1.00956 0.97542 0.91128 1.68898 1.29341 1.05282 1.15945 1.22902 0.91792 0.99497 1.01796 0.96856 0.94092 0.92547 0.89591 0.97254 0.93025 0.85225 0.95462 0.91698 0.90951 0.88990 0.90186 0.91806 0.95111 0.90309 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.52 37.16 0.35 -2.36 16 2 C -0.10 -2.54 5.59 -26.73 -0.15 -2.69 16 3 C 0.22 5.50 2.30 -68.86 -0.16 5.34 16 4 H 0.00 -0.02 7.73 -51.93 -0.40 -0.42 16 5 C -0.51 -13.98 7.26 -34.44 -0.25 -14.23 16 6 H 0.06 1.56 7.61 -52.49 -0.40 1.16 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -25.60 11.32 55.43 0.63 -24.97 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.69 -14.82 5.64 -107.95 -0.61 -15.43 16 14 C 0.08 1.44 5.54 -3.83 -0.02 1.42 16 15 C 0.03 0.49 3.23 -71.44 -0.23 0.26 16 16 H 0.08 1.20 7.91 -51.93 -0.41 0.79 16 17 C -0.14 -1.75 8.01 -26.20 -0.21 -1.96 16 18 C 0.00 -0.06 7.70 -7.56 -0.06 -0.12 16 19 N -0.47 -7.03 6.49 -244.82 -1.59 -8.62 16 20 C -0.01 -0.15 9.63 60.07 0.58 0.43 16 21 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 22 H 0.04 0.89 7.74 -51.93 -0.40 0.48 16 23 H 0.06 1.38 7.07 -51.93 -0.37 1.02 16 24 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 25 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 27 H 0.33 7.20 6.78 -39.29 -0.27 6.93 16 28 H 0.03 0.55 7.96 -51.93 -0.41 0.14 16 29 H 0.06 1.21 7.57 -51.93 -0.39 0.82 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.14 8.12 -51.93 -0.42 0.72 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.67 7.54 -51.93 -0.39 0.28 16 34 H 0.03 0.37 7.52 -51.93 -0.39 -0.02 16 35 H 0.08 1.19 6.86 -51.93 -0.36 0.83 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 283.32 15.07 4.27 4.27 Total: -1.00 -28.37 283.32 -8.71 -37.08 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.15 Total: 3.45 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.24 Total: -12.25 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -1.57 Total: -49.02 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.37 -8.71 -37.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712594493.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.806 kcal (2) G-P(sol) polarization free energy of solvation -28.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds