Wall clock time and date at job start Mon Mar 30 2020 02:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47312 * 2 1 4 4 H 1.09002 * 109.46968 * 179.80248 * 3 2 1 5 5 C 1.50700 * 109.47109 * 299.80700 * 3 2 1 6 6 H 1.07994 * 120.00481 * 120.00127 * 5 3 2 7 7 C 1.37880 * 119.99858 * 299.99426 * 5 3 2 8 8 N 1.31514 * 119.99937 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00254 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46857 * 90.00296 * 9 7 5 11 11 H 1.48495 * 109.47444 * 210.00300 * 9 7 5 12 12 H 1.48501 * 109.46873 * 330.00873 * 9 7 5 13 13 N 1.46904 * 109.46944 * 59.80524 * 3 2 1 14 14 C 1.46893 * 111.00012 * 85.67077 * 13 3 2 15 15 C 1.53005 * 109.47287 * 176.24694 * 14 13 3 16 16 H 1.09004 * 112.78660 * 56.29795 * 15 14 13 17 17 C 1.53508 * 113.48027 * 187.11312 * 15 14 13 18 18 C 1.53510 * 83.57498 * 140.78680 * 17 15 14 19 19 N 1.47474 * 87.93377 * 333.97578 * 18 17 15 20 20 C 1.46903 * 111.00009 * 138.70428 * 19 18 17 21 21 H 1.08997 * 109.47608 * 175.62171 * 1 2 3 22 22 H 1.09003 * 109.47344 * 295.62380 * 1 2 3 23 23 H 1.09004 * 109.47271 * 55.61989 * 1 2 3 24 24 H 1.09003 * 109.47279 * 239.99727 * 2 1 3 25 25 H 1.09001 * 109.46832 * 119.99986 * 2 1 3 26 26 H 0.97002 * 120.00026 * 179.97438 * 8 7 5 27 27 H 1.00904 * 110.99589 * 209.62577 * 13 3 2 28 28 H 1.08994 * 109.47741 * 56.24357 * 14 13 3 29 29 H 1.09003 * 109.46886 * 296.24420 * 14 13 3 30 30 H 1.08995 * 114.17084 * 254.43961 * 17 15 14 31 31 H 1.09003 * 114.16914 * 27.13978 * 17 15 14 32 32 H 1.09006 * 113.47343 * 219.20685 * 18 17 15 33 33 H 1.09005 * 113.47665 * 88.74938 * 18 17 15 34 34 H 1.09005 * 109.46754 * 324.02766 * 20 19 18 35 35 H 1.09002 * 109.47084 * 204.03403 * 20 19 18 36 36 H 1.08995 * 109.47264 * 84.02566 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 0.0035 5 6 1.5416 2.1515 -1.2328 6 1 0.9205 3.0297 -1.1368 7 6 1.8788 1.6791 -2.4835 8 7 2.6349 0.6094 -2.6005 9 14 1.2605 2.5574 -4.0117 10 1 2.2395 3.5990 -4.4142 11 1 1.0993 1.5769 -5.1152 12 1 -0.0488 3.1949 -3.7206 13 7 1.5465 2.1363 1.1971 14 6 2.4351 1.9047 2.3437 15 6 1.9417 2.7160 3.5434 16 1 0.9075 2.4939 3.8067 17 6 2.8996 2.6790 4.7424 18 6 2.5118 4.1581 4.8779 19 7 2.2224 4.1596 3.4318 20 6 0.9956 4.9136 3.1412 21 1 -0.3634 -1.0246 -0.0784 22 1 -0.3634 0.4444 0.9266 23 1 -0.3634 0.5803 -0.8482 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.8718 0.2768 -3.4804 27 1 1.4324 3.1234 1.0216 28 1 3.4479 2.2150 2.0870 29 1 2.4330 0.8444 2.5965 30 1 2.5596 2.0512 5.5660 31 1 3.9433 2.5139 4.4749 32 1 3.3466 4.8023 5.1544 33 1 1.6299 4.3208 5.4975 34 1 0.2751 4.7586 3.9444 35 1 0.5702 4.5664 2.1996 36 1 1.2311 5.9750 3.0642 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712594493.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:27 Heat of formation + Delta-G solvation = 8.207381 kcal Electronic energy + Delta-G solvation = -14738.303247 eV Core-core repulsion = 12450.346220 eV Total energy + Delta-G solvation = -2287.957027 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.07493 -37.87587 -34.46899 -32.62068 -31.56161 -29.21577 -27.10655 -25.07248 -25.02787 -23.50304 -20.90726 -20.51520 -18.42942 -17.15517 -16.85067 -16.15643 -15.99986 -15.43458 -15.08041 -14.93259 -14.05365 -14.02877 -13.79647 -13.38613 -12.98392 -12.86209 -12.79288 -12.43514 -12.35127 -12.18188 -12.05597 -11.67813 -11.65644 -11.38242 -11.04574 -10.77429 -10.53458 -9.77688 -8.98186 -8.09661 -6.22115 1.40790 1.41764 1.52008 2.42175 3.10926 3.18759 3.51459 3.70391 4.10284 4.24820 4.34073 4.45324 4.52804 4.58412 4.65024 4.78422 4.80635 4.83058 4.93542 4.97148 5.02686 5.06238 5.28580 5.30973 5.41378 5.48667 5.56903 5.70974 5.83914 5.90149 6.19849 6.29509 6.51375 6.82229 7.04187 7.46525 8.95546 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038257 B = 0.007873 C = 0.007185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.725174 B = 3555.397797 C = 3896.138989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C 0.221 3.779 4 H -0.042 1.042 5 C -0.523 4.523 6 H 0.054 0.946 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.955 3.045 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.267 1.267 13 N -0.677 5.677 14 C 0.080 3.920 15 C 0.033 3.967 16 H 0.085 0.915 17 C -0.133 4.133 18 C 0.003 3.997 19 N -0.501 5.501 20 C -0.008 4.008 21 H 0.034 0.966 22 H 0.051 0.949 23 H 0.035 0.965 24 H 0.057 0.943 25 H 0.020 0.980 26 H 0.261 0.739 27 H 0.328 0.672 28 H 0.006 0.994 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.369 4.596 13.182 14.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.137 4.137 3 C 0.112 3.888 4 H -0.025 1.025 5 C -0.562 4.562 6 H 0.072 0.928 7 C -0.183 4.183 8 N -0.557 5.557 9 Si 0.781 3.219 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.192 1.192 13 N -0.307 5.307 14 C -0.050 4.050 15 C -0.076 4.076 16 H 0.103 0.897 17 C -0.171 4.171 18 C -0.125 4.125 19 N -0.224 5.224 20 C -0.157 4.157 21 H 0.053 0.947 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.146 0.854 28 H 0.025 0.975 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.266 4.256 12.712 13.595 hybrid contribution 0.072 0.595 -0.955 1.127 sum -2.195 4.851 11.757 12.906 Atomic orbital electron populations 1.21295 0.95819 0.98383 1.00821 1.21306 0.96402 0.97549 0.98463 1.18928 0.90386 0.92348 0.87100 1.02495 1.21442 1.31383 1.11860 0.91493 0.92769 1.25648 0.95256 0.95675 1.01770 1.70024 1.37710 1.23912 1.24033 0.85603 0.78859 0.78279 0.79199 1.20428 1.20830 1.19193 1.60719 1.49277 1.15248 1.05500 1.21844 0.93327 0.98788 0.91089 1.23448 0.99579 0.89626 0.94995 0.89729 1.23171 0.99842 0.96946 0.97176 1.23803 1.02044 0.97290 0.89387 1.68877 1.30074 1.04971 1.18507 1.22873 0.91784 0.99734 1.01345 0.94737 0.92950 0.94615 0.92446 0.96131 0.92994 0.85432 0.97542 0.91809 0.88466 0.89577 0.89244 0.89814 0.93343 0.92438 0.90810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.75 9.52 71.98 0.69 -4.06 16 2 C -0.10 -4.93 5.59 30.59 0.17 -4.76 16 3 C 0.22 11.55 2.30 44.17 0.10 11.65 16 4 H -0.04 -2.53 7.73 -2.39 -0.02 -2.54 16 5 C -0.52 -29.14 7.26 25.60 0.19 -28.96 16 6 H 0.05 2.99 7.61 -2.91 -0.02 2.96 16 7 C 0.02 0.87 5.30 84.66 0.45 1.32 16 8 N -0.92 -53.77 11.32 21.45 0.24 -53.53 16 9 Si 0.95 44.26 29.54 68.60 2.03 46.28 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 N -0.68 -29.48 5.64 -495.45 -2.79 -32.28 16 14 C 0.08 2.98 5.54 86.31 0.48 3.45 16 15 C 0.03 0.95 3.23 42.18 0.14 1.08 16 16 H 0.08 2.36 7.91 -2.39 -0.02 2.34 16 17 C -0.13 -2.91 8.01 30.94 0.25 -2.66 16 18 C 0.00 0.07 7.70 83.57 0.64 0.71 16 19 N -0.50 -14.15 6.49 -928.47 -6.03 -20.18 16 20 C -0.01 -0.21 9.63 127.69 1.23 1.02 16 21 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.05 2.20 7.74 -2.39 -0.02 2.18 16 23 H 0.03 1.72 7.07 -2.38 -0.02 1.71 16 24 H 0.06 3.22 6.06 -2.39 -0.01 3.20 16 25 H 0.02 0.94 7.57 -2.39 -0.02 0.93 16 26 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.33 14.50 6.78 -89.69 -0.61 13.89 16 28 H 0.01 0.26 7.96 -2.39 -0.02 0.24 16 29 H 0.06 2.36 7.57 -2.39 -0.02 2.35 16 30 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.09 1.99 8.12 -2.39 -0.02 1.98 16 32 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.08 1.43 7.54 -2.38 -0.02 1.41 16 34 H 0.05 1.05 7.52 -2.38 -0.02 1.03 16 35 H 0.06 1.70 6.86 -2.39 -0.02 1.68 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -61.01 283.32 -1.80 -62.81 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.43 Total: 18.09 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: 4.33 Total: -21.21 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -8.58 Total: -105.98 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -61.01 -1.80 -62.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712594493.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.019 kcal (2) G-P(sol) polarization free energy of solvation -61.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds