Wall clock time and date at job start Mon Mar 30 2020 03:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46857 * 2 1 4 4 N 1.46895 * 109.47344 * 120.00119 * 2 1 3 5 5 C 1.46894 * 111.00054 * 155.00027 * 4 2 1 6 6 C 1.52998 * 109.47316 * 180.02562 * 5 4 2 7 7 H 1.09005 * 110.64124 * 51.85939 * 6 5 4 8 8 C 1.55162 * 110.72212 * 175.00041 * 6 5 4 9 9 C 1.54907 * 101.58141 * 153.86602 * 8 6 5 10 10 N 1.47424 * 104.83241 * 322.98988 * 9 8 6 11 11 C 1.36943 * 125.64955 * 204.09232 * 10 9 8 12 12 H 1.08002 * 119.99788 * 180.02562 * 11 10 9 13 13 C 1.38811 * 119.99622 * 0.30258 * 11 10 9 14 14 N 1.31614 * 120.00467 * 359.72375 * 13 11 10 15 15 Si 1.86801 * 119.99700 * 179.72266 * 13 11 10 16 16 H 1.48504 * 109.47306 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47021 * 119.99661 * 15 13 11 18 18 H 1.48501 * 109.47039 * 240.00078 * 15 13 11 19 19 C 1.47024 * 108.70428 * 24.35838 * 10 9 8 20 20 H 1.09000 * 109.47446 * 299.99601 * 1 2 3 21 21 H 1.09000 * 109.47679 * 59.99783 * 1 2 3 22 22 H 1.08997 * 109.47417 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46973 * 240.00569 * 2 1 3 24 24 H 1.08992 * 109.47452 * 300.00389 * 3 2 1 25 25 H 1.09004 * 109.46864 * 60.00503 * 3 2 1 26 26 H 1.09004 * 109.47074 * 179.97438 * 3 2 1 27 27 H 1.00902 * 110.99948 * 31.04924 * 4 2 1 28 28 H 1.09002 * 109.47202 * 59.99921 * 5 4 2 29 29 H 1.09006 * 109.47483 * 300.00155 * 5 4 2 30 30 H 1.08996 * 111.00324 * 35.78890 * 8 6 5 31 31 H 1.08998 * 111.03737 * 271.95367 * 8 6 5 32 32 H 1.09001 * 110.36805 * 204.15155 * 9 8 6 33 33 H 1.09001 * 110.46616 * 81.87291 * 9 8 6 34 34 H 0.96995 * 120.00147 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.88094 * 118.13011 * 19 10 9 36 36 H 1.09003 * 109.88256 * 239.30018 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3670 -1.2354 0.9806 6 6 3.8417 -1.9482 2.2484 7 1 3.0976 -2.6701 2.5849 8 6 5.2095 -2.6407 2.0094 9 6 5.7969 -2.6719 3.4424 10 7 5.3687 -1.4004 4.0536 11 6 5.9923 -0.7651 5.0942 12 1 5.5982 0.1667 5.4721 13 6 7.1344 -1.3158 5.6593 14 7 7.6147 -2.4513 5.1986 15 14 7.9895 -0.4453 7.0736 16 1 7.2564 0.8038 7.4018 17 1 8.0098 -1.3348 8.2625 18 1 9.3823 -0.1124 6.6804 19 6 4.1575 -0.9307 3.3651 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.6766 1.9564 -0.8899 25 1 1.6766 1.9563 0.8901 26 1 3.1299 1.4426 0.0005 27 1 1.3794 -1.4182 1.4846 28 1 4.0523 -0.4219 0.7424 29 1 3.3431 -1.9444 0.1529 30 1 5.8363 -2.0481 1.3430 31 1 5.0744 -3.6499 1.6205 32 1 6.8849 -2.7275 3.4054 33 1 5.3935 -3.5162 4.0014 34 1 8.4125 -2.8363 5.5938 35 1 3.3270 -0.8802 4.0691 36 1 4.3367 0.0520 2.9287 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719047400.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:58 Heat of formation + Delta-G solvation = 12.864858 kcal Electronic energy + Delta-G solvation = -14478.666670 eV Core-core repulsion = 12190.911606 eV Total energy + Delta-G solvation = -2287.755063 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.06917 -36.48321 -33.05264 -31.17798 -29.16297 -27.50437 -27.17574 -24.95863 -22.82117 -20.64103 -19.92755 -19.30406 -16.74550 -15.79700 -15.17235 -14.78620 -14.46496 -14.32475 -13.56850 -12.68888 -12.52236 -12.28306 -12.23009 -12.09808 -11.55315 -11.43446 -11.32305 -11.17046 -10.87309 -10.77248 -10.67168 -10.09186 -9.95698 -9.81008 -9.66107 -9.37847 -8.55831 -8.24165 -6.70110 -5.55780 -2.96058 3.45400 3.50735 3.53492 4.24610 4.57938 4.91919 4.99402 5.29878 5.34858 5.49085 5.56574 5.60262 5.65971 5.74397 5.81779 5.86303 5.87311 6.08996 6.11877 6.19730 6.23507 6.35011 6.53043 6.68756 6.77780 6.97612 7.16662 7.24608 7.55376 7.62181 7.74314 7.95522 8.47146 9.33090 9.94782 10.61065 11.48495 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051126 B = 0.006419 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.533302 B = 4361.232101 C = 4698.923662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.077 3.923 3 C -0.140 4.140 4 N -0.684 5.684 5 C 0.074 3.926 6 C -0.098 4.098 7 H 0.066 0.934 8 C -0.139 4.139 9 C 0.152 3.848 10 N -0.609 5.609 11 C -0.215 4.215 12 H 0.077 0.923 13 C -0.015 4.015 14 N -0.925 5.925 15 Si 0.912 3.088 16 H -0.280 1.280 17 H -0.291 1.291 18 H -0.291 1.291 19 C 0.153 3.847 20 H 0.064 0.936 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.038 0.962 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.338 0.662 28 H 0.072 0.928 29 H 0.023 0.977 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.105 0.895 33 H 0.009 0.991 34 H 0.250 0.750 35 H 0.019 0.981 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.767 2.327 -10.738 15.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.032 4.032 3 C -0.198 4.198 4 N -0.316 5.316 5 C -0.055 4.055 6 C -0.117 4.117 7 H 0.084 0.916 8 C -0.179 4.179 9 C 0.027 3.973 10 N -0.335 5.335 11 C -0.344 4.344 12 H 0.095 0.905 13 C -0.210 4.210 14 N -0.575 5.575 15 Si 0.744 3.256 16 H -0.206 1.206 17 H -0.219 1.219 18 H -0.219 1.219 19 C 0.028 3.972 20 H 0.083 0.917 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.156 0.844 28 H 0.090 0.910 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.027 0.973 34 H 0.060 0.940 35 H 0.037 0.963 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -10.372 2.905 -10.300 14.903 hybrid contribution 0.193 -0.406 0.184 0.485 sum -10.179 2.499 -10.116 14.567 Atomic orbital electron populations 1.21967 0.95061 1.01665 1.02371 1.21488 0.94407 0.95753 0.91575 1.21789 1.01345 0.95342 1.01300 1.60509 1.03944 1.33378 1.33736 1.22037 0.89989 0.97287 0.96218 1.22161 0.97190 0.97523 0.94823 0.91589 1.23024 0.95473 0.98385 1.00981 1.21895 1.02003 0.87054 0.86354 1.44600 1.27325 1.23660 1.37889 1.19162 1.05349 1.03352 1.06531 0.90515 1.24772 0.98614 0.97484 1.00158 1.69813 1.24531 1.19542 1.43576 0.86013 0.79336 0.78532 0.81767 1.20560 1.21860 1.21850 1.21178 0.89357 0.94795 0.91906 0.91702 0.92266 0.92967 0.94401 0.93093 0.91957 0.92675 0.84394 0.90971 0.95864 0.92280 0.92712 0.87746 0.97309 0.93955 0.96299 0.95764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.18 37.16 0.34 -1.08 16 2 C 0.08 0.88 3.22 -67.72 -0.22 0.66 16 3 C -0.14 -1.60 9.42 37.16 0.35 -1.25 16 4 N -0.68 -9.24 6.22 -106.73 -0.66 -9.91 16 5 C 0.07 1.11 4.83 -3.83 -0.02 1.09 16 6 C -0.10 -1.78 3.10 -88.78 -0.28 -2.05 16 7 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 8 C -0.14 -2.75 6.54 -24.58 -0.16 -2.91 16 9 C 0.15 3.86 5.89 -2.53 -0.01 3.84 16 10 N -0.61 -16.43 3.39 -170.06 -0.58 -17.01 16 11 C -0.22 -6.28 10.27 -15.06 -0.15 -6.43 16 12 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 13 C -0.02 -0.45 5.49 -17.43 -0.10 -0.55 16 14 N -0.92 -27.84 10.09 55.49 0.56 -27.28 16 15 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 C 0.15 3.43 6.77 -3.06 -0.02 3.41 16 20 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 23 H 0.04 0.43 7.80 -51.93 -0.40 0.03 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.69 7.45 -51.93 -0.39 0.30 16 27 H 0.34 4.21 8.35 -39.29 -0.33 3.88 16 28 H 0.07 1.17 7.24 -51.93 -0.38 0.79 16 29 H 0.02 0.32 8.06 -51.93 -0.42 -0.10 16 30 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 2.96 5.86 -51.93 -0.30 2.65 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.55 7.69 -51.93 -0.40 0.16 16 LS Contribution 285.17 15.07 4.30 4.30 Total: -1.00 -30.61 285.17 -8.06 -38.67 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.39 Total: -1.22 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -0.27 Total: -5.26 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.68 Total: -54.20 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.61 -8.06 -38.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719047400.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.539 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds