Wall clock time and date at job start Mon Mar 30 2020 03:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46894 * 109.47374 * 2 1 4 4 C 1.47444 * 110.99852 * 54.56044 * 3 2 1 5 5 C 1.54327 * 107.23086 * 123.25752 * 4 3 2 6 6 C 1.55133 * 103.01801 * 22.28526 * 5 4 3 7 7 C 1.47845 * 110.99932 * 175.40290 * 3 2 1 8 8 H 1.09002 * 110.37447 * 332.57708 * 7 3 2 9 9 C 1.53001 * 110.37182 * 94.81157 * 7 3 2 10 10 N 1.46901 * 109.47146 * 304.99630 * 9 7 3 11 11 C 1.46894 * 111.00256 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47370 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99956 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00248 * 180.27689 * 12 11 10 15 15 N 1.31506 * 119.99786 * 359.71638 * 14 12 11 16 16 Si 1.86801 * 119.99906 * 179.72155 * 14 12 11 17 17 H 1.48501 * 109.47312 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46910 * 119.99722 * 16 14 12 19 19 H 1.48498 * 109.46983 * 239.99815 * 16 14 12 20 20 H 1.09010 * 109.46928 * 297.03730 * 1 2 3 21 21 H 1.08998 * 109.47280 * 57.02795 * 1 2 3 22 22 H 1.08993 * 109.47919 * 177.03629 * 1 2 3 23 23 H 1.09007 * 109.46623 * 240.00209 * 2 1 3 24 24 H 1.08997 * 109.47041 * 120.00907 * 2 1 3 25 25 H 1.09000 * 109.89079 * 242.66046 * 4 3 2 26 26 H 1.08993 * 109.88869 * 3.69038 * 4 3 2 27 27 H 1.08998 * 110.70087 * 140.66576 * 5 4 3 28 28 H 1.08996 * 110.70189 * 263.72226 * 5 4 3 29 29 H 1.08999 * 110.99089 * 206.25555 * 6 5 4 30 30 H 1.09004 * 110.99664 * 82.43823 * 6 5 4 31 31 H 1.09009 * 109.46783 * 185.00012 * 9 7 3 32 32 H 1.08996 * 109.47624 * 64.99563 * 9 7 3 33 33 H 1.00900 * 110.99825 * 56.04882 * 10 9 7 34 34 H 1.08996 * 109.47685 * 59.99914 * 11 10 9 35 35 H 1.09006 * 109.47170 * 300.00016 * 11 10 9 36 36 H 0.97003 * 120.00161 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4433 2.1491 1.1215 5 6 2.6213 2.7068 1.9479 6 6 3.7932 2.7049 0.9314 7 6 3.4934 1.4257 0.1106 8 1 3.8593 0.5425 0.6342 9 6 4.1293 1.5225 -1.2776 10 7 3.6468 0.4164 -2.1154 11 6 4.2381 0.4767 -3.4587 12 6 3.7204 -0.6706 -4.2874 13 1 3.0223 -1.3744 -3.8588 14 6 4.1428 -0.8253 -5.5908 15 7 4.9931 0.0315 -6.1125 16 14 3.5070 -2.2520 -6.6154 17 1 2.5687 -3.0663 -5.8020 18 1 2.7992 -1.7264 -7.8104 19 1 4.6483 -3.0977 -7.0484 20 1 -0.3633 0.4672 0.9154 21 1 -0.3634 0.5593 -0.8621 22 1 -0.3635 -1.0262 -0.0531 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5140 0.8899 25 1 0.8377 2.9704 0.7382 26 1 0.8304 1.4940 1.7404 27 1 2.4078 3.7201 2.2880 28 1 2.8406 2.0558 2.7942 29 1 4.7529 2.6251 1.4420 30 1 3.7622 3.5915 0.2979 31 1 5.2138 1.4622 -1.1855 32 1 3.8559 2.4723 -1.7372 33 1 2.6389 0.4123 -2.1634 34 1 5.3232 0.4090 -3.3815 35 1 3.9658 1.4193 -3.9336 36 1 5.2900 -0.0771 -7.0296 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034936541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:50 Heat of formation + Delta-G solvation = -1.737232 kcal Electronic energy + Delta-G solvation = -14546.536533 eV Core-core repulsion = 12258.148275 eV Total energy + Delta-G solvation = -2288.388258 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.21067 -34.90916 -33.27218 -32.38737 -29.67892 -28.39823 -26.42074 -24.05975 -22.51058 -21.03155 -20.46549 -19.55295 -16.69558 -16.20381 -15.45191 -14.56050 -14.41342 -14.22405 -13.48064 -13.16835 -12.85462 -12.68546 -12.51153 -12.03451 -11.60802 -11.43732 -11.13516 -11.07400 -10.98588 -10.87218 -10.69310 -10.45338 -10.44861 -10.31181 -9.73401 -9.07778 -8.42390 -8.05212 -7.13677 -5.97126 -3.98394 3.34610 3.41448 3.46749 4.15629 4.47819 4.71249 4.77295 5.01418 5.33323 5.34476 5.38881 5.45265 5.51275 5.64959 5.68730 5.76568 5.86964 5.94407 5.95882 6.06029 6.09165 6.27367 6.31258 6.35816 6.56658 6.57373 7.25569 7.35624 7.41376 7.54865 7.86373 8.22246 8.55106 8.75587 9.11867 9.66192 11.14216 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041862 B = 0.006889 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.699610 B = 4063.293758 C = 4603.172534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.041 3.959 3 N -0.524 5.524 4 C 0.039 3.961 5 C -0.142 4.142 6 C -0.125 4.125 7 C 0.076 3.924 8 H 0.058 0.942 9 C 0.076 3.924 10 N -0.692 5.692 11 C 0.193 3.807 12 C -0.510 4.510 13 H 0.061 0.939 14 C 0.054 3.946 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 H 0.048 0.952 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.099 0.901 24 H 0.027 0.973 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.023 0.977 33 H 0.336 0.664 34 H 0.025 0.975 35 H -0.015 1.015 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.953 3.910 14.767 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.087 4.087 3 N -0.249 5.249 4 C -0.089 4.089 5 C -0.180 4.180 6 C -0.164 4.164 7 C -0.032 4.032 8 H 0.076 0.924 9 C -0.055 4.055 10 N -0.324 5.324 11 C 0.066 3.934 12 C -0.548 4.548 13 H 0.079 0.921 14 C -0.147 4.147 15 N -0.539 5.539 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.211 1.211 20 H 0.067 0.933 21 H 0.082 0.918 22 H 0.076 0.924 23 H 0.117 0.883 24 H 0.045 0.955 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.155 0.845 34 H 0.043 0.957 35 H 0.003 0.997 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.554 3.701 14.351 15.827 hybrid contribution -0.458 -0.338 -0.288 0.638 sum -6.012 3.363 14.063 15.660 Atomic orbital electron populations 1.21907 0.95585 1.01600 1.01874 1.22428 0.95098 0.89139 1.02015 1.63517 1.06219 1.12843 1.42308 1.22855 0.96667 0.97902 0.91449 1.22765 0.96027 1.01209 0.98029 1.22739 0.97899 0.98534 0.97186 1.22686 0.87246 0.96699 0.96590 0.92411 1.21798 0.98248 0.93721 0.91728 1.60782 1.12721 1.42926 1.15998 1.19535 0.95314 0.95579 0.82990 1.21237 1.26322 1.11056 0.96229 0.92057 1.24994 0.95267 0.96552 0.97862 1.69977 1.32793 1.36361 1.14739 0.86448 0.78646 0.82308 0.80036 1.19687 1.21125 1.21067 0.93260 0.91753 0.92386 0.88272 0.95523 0.91035 0.92704 0.91173 0.91877 0.91049 0.90631 0.91933 0.95928 0.84471 0.95709 0.99708 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.62 37.16 0.36 -1.52 16 2 C 0.04 0.60 5.10 -3.83 -0.02 0.58 16 3 N -0.52 -7.80 4.49 -223.38 -1.00 -8.80 16 4 C 0.04 0.47 6.17 -2.83 -0.02 0.46 16 5 C -0.14 -1.52 6.94 -24.91 -0.17 -1.69 16 6 C -0.12 -1.54 6.49 -24.60 -0.16 -1.70 16 7 C 0.08 1.17 2.83 -66.18 -0.19 0.98 16 8 H 0.06 0.92 7.70 -51.93 -0.40 0.52 16 9 C 0.08 1.43 5.52 -3.82 -0.02 1.41 16 10 N -0.69 -15.54 5.85 -115.06 -0.67 -16.22 16 11 C 0.19 5.26 5.44 -4.98 -0.03 5.24 16 12 C -0.51 -14.86 9.32 -34.44 -0.32 -15.19 16 13 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 16 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H 0.05 0.54 6.29 -51.92 -0.33 0.21 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.10 1.70 5.77 -51.93 -0.30 1.40 16 24 H 0.03 0.37 7.98 -51.93 -0.41 -0.04 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.61 5.96 -51.93 -0.31 0.30 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.96 7.97 -51.93 -0.41 0.54 16 31 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 32 H 0.02 0.44 8.03 -51.93 -0.42 0.03 16 33 H 0.34 7.42 6.02 -39.29 -0.24 7.19 16 34 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 35 H -0.01 -0.44 8.14 -51.93 -0.42 -0.86 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 282.49 15.07 4.26 4.26 Total: -1.00 -30.38 282.49 -8.54 -38.92 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.17 Total: 1.48 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -0.67 Total: -9.95 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.94 Total: -51.80 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.38 -8.54 -38.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034936541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.181 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds