Wall clock time and date at job start Mon Mar 30 2020 03:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46894 * 109.47374 * 2 1 4 4 C 1.47444 * 110.99852 * 54.56044 * 3 2 1 5 5 C 1.54327 * 107.23086 * 123.25752 * 4 3 2 6 6 C 1.55133 * 103.01801 * 22.28526 * 5 4 3 7 7 C 1.47845 * 110.99932 * 175.40290 * 3 2 1 8 8 H 1.09002 * 110.37447 * 332.57708 * 7 3 2 9 9 C 1.53001 * 110.37182 * 94.81157 * 7 3 2 10 10 N 1.46901 * 109.47146 * 304.99630 * 9 7 3 11 11 C 1.46894 * 111.00256 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47370 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99956 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00248 * 180.27689 * 12 11 10 15 15 N 1.31506 * 119.99786 * 359.71638 * 14 12 11 16 16 Si 1.86801 * 119.99906 * 179.72155 * 14 12 11 17 17 H 1.48501 * 109.47312 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46910 * 119.99722 * 16 14 12 19 19 H 1.48498 * 109.46983 * 239.99815 * 16 14 12 20 20 H 1.09010 * 109.46928 * 297.03730 * 1 2 3 21 21 H 1.08998 * 109.47280 * 57.02795 * 1 2 3 22 22 H 1.08993 * 109.47919 * 177.03629 * 1 2 3 23 23 H 1.09007 * 109.46623 * 240.00209 * 2 1 3 24 24 H 1.08997 * 109.47041 * 120.00907 * 2 1 3 25 25 H 1.09000 * 109.89079 * 242.66046 * 4 3 2 26 26 H 1.08993 * 109.88869 * 3.69038 * 4 3 2 27 27 H 1.08998 * 110.70087 * 140.66576 * 5 4 3 28 28 H 1.08996 * 110.70189 * 263.72226 * 5 4 3 29 29 H 1.08999 * 110.99089 * 206.25555 * 6 5 4 30 30 H 1.09004 * 110.99664 * 82.43823 * 6 5 4 31 31 H 1.09009 * 109.46783 * 185.00012 * 9 7 3 32 32 H 1.08996 * 109.47624 * 64.99563 * 9 7 3 33 33 H 1.00900 * 110.99825 * 56.04882 * 10 9 7 34 34 H 1.08996 * 109.47685 * 59.99914 * 11 10 9 35 35 H 1.09006 * 109.47170 * 300.00016 * 11 10 9 36 36 H 0.97003 * 120.00161 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4433 2.1491 1.1215 5 6 2.6213 2.7068 1.9479 6 6 3.7932 2.7049 0.9314 7 6 3.4934 1.4257 0.1106 8 1 3.8593 0.5425 0.6342 9 6 4.1293 1.5225 -1.2776 10 7 3.6468 0.4164 -2.1154 11 6 4.2381 0.4767 -3.4587 12 6 3.7204 -0.6706 -4.2874 13 1 3.0223 -1.3744 -3.8588 14 6 4.1428 -0.8253 -5.5908 15 7 4.9931 0.0315 -6.1125 16 14 3.5070 -2.2520 -6.6154 17 1 2.5687 -3.0663 -5.8020 18 1 2.7992 -1.7264 -7.8104 19 1 4.6483 -3.0977 -7.0484 20 1 -0.3633 0.4672 0.9154 21 1 -0.3634 0.5593 -0.8621 22 1 -0.3635 -1.0262 -0.0531 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5140 0.8899 25 1 0.8377 2.9704 0.7382 26 1 0.8304 1.4940 1.7404 27 1 2.4078 3.7201 2.2880 28 1 2.8406 2.0558 2.7942 29 1 4.7529 2.6251 1.4420 30 1 3.7622 3.5915 0.2979 31 1 5.2138 1.4622 -1.1855 32 1 3.8559 2.4723 -1.7372 33 1 2.6389 0.4123 -2.1634 34 1 5.3232 0.4090 -3.3815 35 1 3.9658 1.4193 -3.9336 36 1 5.2900 -0.0771 -7.0296 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034936541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:50 Heat of formation + Delta-G solvation = -22.937258 kcal Electronic energy + Delta-G solvation = -14547.455835 eV Core-core repulsion = 12258.148275 eV Total energy + Delta-G solvation = -2289.307560 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.35302 -36.76654 -34.58595 -34.23910 -31.16975 -29.45838 -28.29277 -25.53909 -24.04350 -22.77345 -21.54767 -20.73889 -18.62524 -17.64313 -16.86328 -16.41801 -15.95063 -15.36674 -14.95481 -14.64569 -14.37250 -14.00558 -13.93857 -13.48158 -13.18975 -12.87072 -12.76589 -12.56481 -12.41897 -12.20884 -11.99983 -11.94789 -11.76788 -11.52185 -11.42419 -11.18186 -10.66925 -9.24567 -9.01473 -8.22379 -6.33800 1.40709 1.41802 1.55918 2.40330 3.04143 3.10653 3.51634 3.75008 4.00557 4.11041 4.25800 4.32096 4.42129 4.43140 4.64954 4.70378 4.72813 4.82631 4.86258 4.98134 5.03973 5.06753 5.13712 5.16788 5.27723 5.30923 5.36126 5.41366 5.61610 6.02475 6.15422 6.27274 6.49644 6.76218 6.92326 7.37266 8.89839 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041862 B = 0.006889 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.699610 B = 4063.293758 C = 4603.172534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.042 3.958 3 N -0.543 5.543 4 C 0.037 3.963 5 C -0.132 4.132 6 C -0.121 4.121 7 C 0.081 3.919 8 H 0.054 0.946 9 C 0.075 3.925 10 N -0.686 5.686 11 C 0.207 3.793 12 C -0.533 4.533 13 H 0.063 0.937 14 C -0.001 4.001 15 N -0.936 5.936 16 Si 0.976 3.024 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.277 1.277 20 H 0.068 0.932 21 H 0.052 0.948 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.033 0.967 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.012 0.988 33 H 0.339 0.661 34 H -0.002 1.002 35 H -0.045 1.045 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.124 3.431 16.031 17.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 N -0.269 5.269 4 C -0.090 4.090 5 C -0.170 4.170 6 C -0.160 4.160 7 C -0.028 4.028 8 H 0.072 0.928 9 C -0.055 4.055 10 N -0.318 5.318 11 C 0.079 3.921 12 C -0.571 4.571 13 H 0.081 0.919 14 C -0.199 4.199 15 N -0.576 5.576 16 Si 0.800 3.200 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.202 1.202 20 H 0.087 0.913 21 H 0.071 0.929 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.051 0.949 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.030 0.970 33 H 0.159 0.841 34 H 0.016 0.984 35 H -0.028 1.028 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.736 3.233 15.644 17.336 hybrid contribution -0.073 -0.139 -0.659 0.678 sum -6.809 3.093 14.985 16.747 Atomic orbital electron populations 1.21849 0.93783 1.02300 1.02290 1.22348 0.96572 0.88922 1.00716 1.63420 1.05823 1.13269 1.44357 1.22926 0.97324 0.97843 0.90901 1.22743 0.94149 1.02643 0.97477 1.22725 0.99628 0.96398 0.97214 1.22548 0.87732 0.98334 0.94170 0.92810 1.21902 0.98425 0.91850 0.93347 1.60701 1.12787 1.44728 1.13583 1.19204 0.93792 0.93871 0.85216 1.21558 1.26817 1.11642 0.97123 0.91871 1.25998 0.95186 0.99543 0.99140 1.70106 1.33802 1.38292 1.15405 0.85243 0.78283 0.78432 0.78074 1.18588 1.20210 1.20244 0.91346 0.92920 0.91412 0.91440 0.94880 0.90844 0.91324 0.89125 0.90699 0.89513 0.91152 0.92306 0.96979 0.84086 0.98423 1.02773 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.62 71.98 0.69 -2.64 16 2 C 0.04 1.20 5.10 86.30 0.44 1.64 16 3 N -0.54 -15.63 4.49 -860.64 -3.87 -19.49 16 4 C 0.04 0.81 6.17 86.65 0.54 1.34 16 5 C -0.13 -2.40 6.94 31.78 0.22 -2.18 16 6 C -0.12 -2.76 6.49 31.98 0.21 -2.55 16 7 C 0.08 2.42 2.83 45.39 0.13 2.55 16 8 H 0.05 1.66 7.70 -2.39 -0.02 1.65 16 9 C 0.08 2.91 5.52 86.30 0.48 3.38 16 10 N -0.69 -31.83 5.85 -517.94 -3.03 -34.86 16 11 C 0.21 11.81 5.44 85.56 0.47 12.28 16 12 C -0.53 -31.74 9.32 25.60 0.24 -31.50 16 13 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 14 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 15 N -0.94 -58.29 13.29 21.45 0.28 -58.00 16 16 Si 0.98 45.40 29.54 68.60 2.03 47.43 16 17 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 H 0.07 1.31 6.29 -2.38 -0.01 1.29 16 21 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.07 2.33 5.77 -2.38 -0.01 2.32 16 24 H 0.03 0.88 7.98 -2.39 -0.02 0.86 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.07 1.30 5.96 -2.39 -0.01 1.29 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 1.69 7.97 -2.38 -0.02 1.67 16 31 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.01 0.49 8.03 -2.39 -0.02 0.47 16 33 H 0.34 15.45 6.02 -89.69 -0.54 14.91 16 34 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H -0.05 -2.80 8.14 -2.38 -0.02 -2.82 16 36 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -66.01 282.49 -0.22 -66.23 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.49 Total: 15.96 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 3.87 Total: -17.27 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -6.61 Total: -112.35 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -66.01 -0.22 -66.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034936541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.291 kcal (2) G-P(sol) polarization free energy of solvation -66.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds