Wall clock time and date at job start Mon Mar 30 2020 03:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47094 * 2 1 4 4 C 1.48533 * 110.99772 * 52.60608 * 3 2 1 5 5 C 1.54942 * 103.22658 * 159.71645 * 4 3 2 6 6 C 1.54592 * 102.92429 * 322.58748 * 5 4 3 7 7 H 1.09001 * 110.30630 * 263.04038 * 6 5 4 8 8 C 1.52993 * 110.31048 * 140.87189 * 6 5 4 9 9 N 1.46902 * 109.47193 * 69.28147 * 8 6 5 10 10 C 1.46906 * 111.00040 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.46899 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00092 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00014 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00401 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99842 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47264 * 90.00315 * 15 13 11 17 17 H 1.48500 * 109.47093 * 210.00115 * 15 13 11 18 18 H 1.48501 * 109.47067 * 330.00051 * 15 13 11 19 19 C 1.47907 * 110.99957 * 169.99900 * 3 2 1 20 20 H 1.09002 * 109.47153 * 299.99508 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99681 * 1 2 3 23 23 H 1.08996 * 109.47853 * 120.00463 * 2 1 3 24 24 H 1.09002 * 109.47153 * 240.00492 * 2 1 3 25 25 H 1.08993 * 110.67030 * 278.15538 * 4 3 2 26 26 H 1.09010 * 110.66685 * 41.28580 * 4 3 2 27 27 H 1.08998 * 110.72134 * 204.22842 * 5 4 3 28 28 H 1.08995 * 110.72081 * 80.94823 * 5 4 3 29 29 H 1.08998 * 109.47453 * 189.28436 * 8 6 5 30 30 H 1.09007 * 109.47184 * 309.28897 * 8 6 5 31 31 H 1.00903 * 110.99729 * 56.05257 * 9 8 6 32 32 H 1.08993 * 109.47347 * 300.00615 * 10 9 8 33 33 H 1.08998 * 109.46391 * 60.00541 * 10 9 8 34 34 H 0.97000 * 120.00116 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.91580 * 333.51476 * 19 3 2 36 36 H 1.08995 * 109.91631 * 94.60892 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4031 2.1675 1.1017 5 6 2.3781 3.3585 1.2794 6 6 3.7624 2.7091 1.0513 7 1 4.2235 2.4562 2.0060 8 6 4.6672 3.6528 0.2566 9 7 5.0233 4.8080 1.0913 10 6 5.8942 5.7376 0.3595 11 6 6.2381 6.9069 1.2459 12 1 5.8491 6.9544 2.2523 13 6 7.0495 7.9159 0.7721 14 7 7.3501 8.9360 1.5457 15 14 7.7218 7.8340 -0.9688 16 1 6.7730 8.4990 -1.8977 17 1 9.0354 8.5243 -1.0251 18 1 7.8915 6.4137 -1.3676 19 6 3.4784 1.4315 0.2398 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 0.4126 2.5207 0.8152 26 1 1.3517 1.5730 2.0140 27 1 2.3059 3.7690 2.2866 28 1 2.1858 4.1290 0.5329 29 1 5.5737 3.1243 -0.0383 30 1 4.1409 3.9965 -0.6339 31 1 5.4551 4.5115 1.9537 32 1 6.8092 5.2234 0.0656 33 1 5.3768 6.0958 -0.5305 34 1 7.9206 9.6461 1.2122 35 1 3.7895 0.5543 0.8072 36 1 4.0101 1.4662 -0.7110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037484366.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:26 Heat of formation + Delta-G solvation = -4.089014 kcal Electronic energy + Delta-G solvation = -14126.708099 eV Core-core repulsion = 11838.217860 eV Total energy + Delta-G solvation = -2288.490239 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.21128 -35.72648 -33.41191 -32.09650 -29.43327 -29.24443 -26.84657 -23.49507 -23.05250 -21.06339 -20.55206 -19.87381 -16.80705 -16.05901 -15.68286 -14.85221 -14.68037 -14.23556 -13.74076 -13.69011 -13.03947 -12.81206 -12.53984 -12.36886 -11.85880 -11.54828 -11.46331 -11.31604 -11.09087 -11.04460 -10.83029 -10.48227 -10.38874 -10.19195 -9.76165 -9.26130 -8.57083 -8.45038 -7.42362 -6.04261 -4.02058 3.30728 3.37538 3.40397 3.95954 4.43816 4.60419 4.81940 4.89833 5.04202 5.09016 5.27908 5.28729 5.33135 5.48636 5.50565 5.62534 5.69380 5.76745 5.82894 5.95301 5.96421 6.06173 6.16214 6.25727 6.45091 6.52670 6.81243 6.91922 7.01813 7.05794 7.63127 7.92442 8.36768 8.67483 9.03729 9.57984 11.09074 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.069441 B = 0.005228 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.123840 B = 5354.455158 C = 5536.652635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.041 3.959 3 N -0.518 5.518 4 C 0.031 3.969 5 C -0.104 4.104 6 C -0.094 4.094 7 H 0.071 0.929 8 C 0.067 3.933 9 N -0.679 5.679 10 C 0.164 3.836 11 C -0.515 4.515 12 H 0.079 0.921 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.878 3.122 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.268 1.268 19 C 0.041 3.959 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.063 0.937 23 H 0.031 0.969 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.017 0.983 30 H 0.068 0.932 31 H 0.333 0.667 32 H -0.017 1.017 33 H 0.022 0.978 34 H 0.263 0.737 35 H 0.040 0.960 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.469 -17.154 -2.618 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.087 4.087 3 N -0.243 5.243 4 C -0.096 4.096 5 C -0.142 4.142 6 C -0.114 4.114 7 H 0.089 0.911 8 C -0.063 4.063 9 N -0.309 5.309 10 C 0.036 3.964 11 C -0.553 4.553 12 H 0.097 0.903 13 C -0.134 4.134 14 N -0.540 5.540 15 Si 0.705 3.295 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.193 1.193 19 C -0.088 4.088 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.050 0.950 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.035 0.965 30 H 0.087 0.913 31 H 0.150 0.850 32 H 0.001 0.999 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.074 -16.426 -3.287 20.081 hybrid contribution 1.518 -0.835 -0.152 1.739 sum -9.556 -17.261 -3.438 20.027 Atomic orbital electron populations 1.21845 0.94984 1.01543 1.02592 1.22253 0.95957 0.89919 1.00563 1.64825 1.04587 1.11265 1.43606 1.23309 0.99082 0.95107 0.92123 1.22418 0.92451 0.96668 1.02666 1.21994 0.96971 0.94008 0.98410 0.91071 1.22000 0.96425 0.91331 0.96542 1.60466 1.49003 1.14415 1.07034 1.19991 0.89569 0.91937 0.94917 1.21074 1.29447 1.03492 1.01338 0.90327 1.24909 0.95899 0.95167 0.97401 1.69900 1.37504 1.10233 1.36402 0.86815 0.78620 0.78521 0.85503 1.20114 1.21239 1.19293 1.22922 0.88850 0.96983 1.00005 0.92534 0.92464 0.91806 0.95046 0.90902 0.90265 0.94221 0.90879 0.90157 0.96516 0.91331 0.85000 0.99950 0.96023 0.92672 0.94127 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.57 37.16 0.36 -0.94 16 2 C 0.04 0.41 5.75 -3.82 -0.02 0.39 16 3 N -0.52 -6.32 5.40 -230.44 -1.24 -7.57 16 4 C 0.03 0.37 5.10 -1.89 -0.01 0.36 16 5 C -0.10 -1.43 6.48 -24.87 -0.16 -1.59 16 6 C -0.09 -1.32 3.16 -89.27 -0.28 -1.60 16 7 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 8 C 0.07 1.14 4.78 -3.83 -0.02 1.13 16 9 N -0.68 -14.15 6.35 -115.06 -0.73 -14.88 16 10 C 0.16 4.06 4.51 -4.97 -0.02 4.04 16 11 C -0.52 -14.97 9.87 -34.44 -0.34 -15.31 16 12 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 14 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 15 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 19 C 0.04 0.51 6.35 -2.75 -0.02 0.49 16 20 H 0.06 0.48 6.79 -51.93 -0.35 0.13 16 21 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.03 0.31 7.81 -51.93 -0.41 -0.10 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.88 7.66 -51.93 -0.40 0.48 16 26 H 0.04 0.44 8.00 -51.92 -0.42 0.02 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 1.24 7.76 -51.93 -0.40 0.84 16 29 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 1.21 7.99 -51.93 -0.42 0.80 16 31 H 0.33 6.71 8.72 -39.29 -0.34 6.37 16 32 H -0.02 -0.43 7.20 -51.93 -0.37 -0.80 16 33 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.04 0.46 7.57 -51.93 -0.39 0.07 16 36 H 0.08 1.00 7.69 -51.93 -0.40 0.60 16 LS Contribution 284.96 15.07 4.29 4.29 Total: -1.00 -30.50 284.96 -8.61 -39.11 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.42 Total: 0.17 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -0.61 Total: -11.14 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -1.20 Total: -49.68 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.50 -8.61 -39.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037484366.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.019 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds