Wall clock time and date at job start Mon Mar 30 2020 03:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47094 * 2 1 4 4 C 1.48533 * 110.99772 * 52.60608 * 3 2 1 5 5 C 1.54942 * 103.22658 * 159.71645 * 4 3 2 6 6 C 1.54592 * 102.92429 * 322.58748 * 5 4 3 7 7 H 1.09001 * 110.30630 * 263.04038 * 6 5 4 8 8 C 1.52993 * 110.31048 * 140.87189 * 6 5 4 9 9 N 1.46902 * 109.47193 * 69.28147 * 8 6 5 10 10 C 1.46906 * 111.00040 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.46899 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00092 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00014 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00401 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99842 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47264 * 90.00315 * 15 13 11 17 17 H 1.48500 * 109.47093 * 210.00115 * 15 13 11 18 18 H 1.48501 * 109.47067 * 330.00051 * 15 13 11 19 19 C 1.47907 * 110.99957 * 169.99900 * 3 2 1 20 20 H 1.09002 * 109.47153 * 299.99508 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99681 * 1 2 3 23 23 H 1.08996 * 109.47853 * 120.00463 * 2 1 3 24 24 H 1.09002 * 109.47153 * 240.00492 * 2 1 3 25 25 H 1.08993 * 110.67030 * 278.15538 * 4 3 2 26 26 H 1.09010 * 110.66685 * 41.28580 * 4 3 2 27 27 H 1.08998 * 110.72134 * 204.22842 * 5 4 3 28 28 H 1.08995 * 110.72081 * 80.94823 * 5 4 3 29 29 H 1.08998 * 109.47453 * 189.28436 * 8 6 5 30 30 H 1.09007 * 109.47184 * 309.28897 * 8 6 5 31 31 H 1.00903 * 110.99729 * 56.05257 * 9 8 6 32 32 H 1.08993 * 109.47347 * 300.00615 * 10 9 8 33 33 H 1.08998 * 109.46391 * 60.00541 * 10 9 8 34 34 H 0.97000 * 120.00116 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.91580 * 333.51476 * 19 3 2 36 36 H 1.08995 * 109.91631 * 94.60892 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4031 2.1675 1.1017 5 6 2.3781 3.3585 1.2794 6 6 3.7624 2.7091 1.0513 7 1 4.2235 2.4562 2.0060 8 6 4.6672 3.6528 0.2566 9 7 5.0233 4.8080 1.0913 10 6 5.8942 5.7376 0.3595 11 6 6.2381 6.9069 1.2459 12 1 5.8491 6.9544 2.2523 13 6 7.0495 7.9159 0.7721 14 7 7.3501 8.9360 1.5457 15 14 7.7218 7.8340 -0.9688 16 1 6.7730 8.4990 -1.8977 17 1 9.0354 8.5243 -1.0251 18 1 7.8915 6.4137 -1.3676 19 6 3.4784 1.4315 0.2398 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 0.4126 2.5207 0.8152 26 1 1.3517 1.5730 2.0140 27 1 2.3059 3.7690 2.2866 28 1 2.1858 4.1290 0.5329 29 1 5.5737 3.1243 -0.0383 30 1 4.1409 3.9965 -0.6339 31 1 5.4551 4.5115 1.9537 32 1 6.8092 5.2234 0.0656 33 1 5.3768 6.0958 -0.5305 34 1 7.9206 9.6461 1.2122 35 1 3.7895 0.5543 0.8072 36 1 4.0101 1.4662 -0.7110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037484366.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:25 Heat of formation + Delta-G solvation = -26.733540 kcal Electronic energy + Delta-G solvation = -14127.690039 eV Core-core repulsion = 11838.217860 eV Total energy + Delta-G solvation = -2289.472179 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.22337 -37.25026 -34.98549 -33.82556 -30.79139 -30.18448 -28.53260 -24.91993 -23.99049 -22.99910 -21.44843 -21.05257 -18.96103 -17.11018 -16.82666 -16.45267 -16.02623 -15.57216 -15.29962 -14.91821 -14.49682 -14.14122 -13.80316 -13.72307 -13.32103 -12.82869 -12.68378 -12.57504 -12.33991 -12.23268 -11.95316 -11.88512 -11.79330 -11.64981 -11.46993 -11.30323 -10.81385 -9.33909 -9.12083 -8.30860 -6.35437 1.34996 1.36117 1.47303 2.33586 3.03172 3.08249 3.38039 3.76749 3.85486 4.03072 4.24143 4.32827 4.38460 4.48752 4.58807 4.62634 4.67471 4.76706 4.79386 4.86713 4.97221 4.98300 5.08939 5.09862 5.16765 5.26000 5.33992 5.41097 5.51605 5.94514 5.97545 6.16809 6.55636 6.65707 6.76898 7.29834 8.85870 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.069441 B = 0.005228 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.123840 B = 5354.455158 C = 5536.652635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.039 3.961 3 N -0.533 5.533 4 C 0.040 3.960 5 C -0.106 4.106 6 C -0.089 4.089 7 H 0.076 0.924 8 C 0.071 3.929 9 N -0.686 5.686 10 C 0.174 3.826 11 C -0.529 4.529 12 H 0.038 0.962 13 C 0.008 3.992 14 N -0.947 5.947 15 Si 0.952 3.048 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.252 1.252 19 C 0.046 3.954 20 H 0.055 0.945 21 H 0.073 0.927 22 H 0.056 0.944 23 H 0.037 0.963 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.024 0.976 30 H 0.061 0.939 31 H 0.336 0.664 32 H -0.014 1.014 33 H 0.021 0.979 34 H 0.268 0.732 35 H 0.055 0.945 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.783 -19.034 -3.953 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 N -0.258 5.258 4 C -0.087 4.087 5 C -0.144 4.144 6 C -0.109 4.109 7 H 0.095 0.905 8 C -0.059 4.059 9 N -0.316 5.316 10 C 0.046 3.954 11 C -0.567 4.567 12 H 0.056 0.944 13 C -0.190 4.190 14 N -0.588 5.588 15 Si 0.775 3.225 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.176 1.176 19 C -0.082 4.082 20 H 0.074 0.926 21 H 0.092 0.908 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.153 0.847 32 H 0.004 0.996 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.407 -18.333 -4.616 22.080 hybrid contribution 1.563 -0.256 0.352 1.623 sum -9.843 -18.589 -4.263 21.462 Atomic orbital electron populations 1.21822 0.93969 1.02575 1.02246 1.22333 0.96819 0.88628 1.01063 1.64828 1.04361 1.12787 1.43836 1.23235 0.98668 0.94216 0.92618 1.22372 0.93197 0.97077 1.01745 1.21934 0.96321 0.94159 0.98474 0.90521 1.22035 0.97188 0.90468 0.96166 1.60356 1.47926 1.15903 1.07447 1.19740 0.90234 0.91308 0.94156 1.21345 1.29454 1.05437 1.00448 0.94380 1.25882 0.96149 0.94535 1.02395 1.70049 1.38536 1.11281 1.38897 0.85648 0.78074 0.79455 0.79328 1.19100 1.20463 1.17588 1.22845 0.89293 0.96356 0.99747 0.92550 0.90794 0.92452 0.94450 0.90434 0.89640 0.93103 0.91234 0.92237 0.95739 0.92050 0.84695 0.99638 0.96067 0.92308 0.92669 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.57 71.98 0.69 -1.48 16 2 C 0.04 0.68 5.75 86.30 0.50 1.18 16 3 N -0.53 -11.86 5.40 -882.99 -4.77 -16.62 16 4 C 0.04 0.87 5.10 86.65 0.44 1.31 16 5 C -0.11 -2.81 6.48 31.80 0.21 -2.61 16 6 C -0.09 -2.37 3.16 -9.92 -0.03 -2.40 16 7 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 8 C 0.07 2.33 4.78 86.30 0.41 2.74 16 9 N -0.69 -28.39 6.35 -517.93 -3.29 -31.68 16 10 C 0.17 8.55 4.51 85.56 0.39 8.94 16 11 C -0.53 -31.27 9.87 25.60 0.25 -31.02 16 12 H 0.04 2.49 8.06 -2.91 -0.02 2.46 16 13 C 0.01 0.47 5.47 84.65 0.46 0.93 16 14 N -0.95 -59.91 13.96 21.44 0.30 -59.61 16 15 Si 0.95 44.78 27.47 68.60 1.88 46.66 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 19 C 0.05 1.04 6.35 86.45 0.55 1.59 16 20 H 0.06 0.82 6.79 -2.39 -0.02 0.80 16 21 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 23 H 0.04 0.61 7.81 -2.39 -0.02 0.59 16 24 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.09 1.74 7.66 -2.39 -0.02 1.72 16 26 H 0.05 1.00 8.00 -2.38 -0.02 0.98 16 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.06 1.82 7.76 -2.39 -0.02 1.81 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 2.11 7.99 -2.38 -0.02 2.09 16 31 H 0.34 13.54 8.72 -89.69 -0.78 12.75 16 32 H -0.01 -0.68 7.20 -2.39 -0.02 -0.69 16 33 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 34 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 35 H 0.06 1.10 7.57 -2.39 -0.02 1.08 16 36 H 0.08 1.77 7.69 -2.39 -0.02 1.76 16 Total: -1.00 -65.27 284.96 -1.82 -67.09 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.19 Total: 14.99 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: 3.86 Total: -20.82 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -7.76 Total: -107.92 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Total: -65.27 -1.82 -67.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037484366.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.356 kcal (2) G-P(sol) polarization free energy of solvation -65.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds