Wall clock time and date at job start Mon Mar 30 2020 03:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47060 * 2 1 4 4 C 1.47446 * 111.00255 * 69.87065 * 3 2 1 5 5 C 1.54316 * 107.23320 * 123.25926 * 4 3 2 6 6 C 1.55139 * 103.01810 * 22.28197 * 5 4 3 7 7 H 1.09002 * 110.99125 * 82.47994 * 6 5 4 8 8 C 1.52999 * 110.99115 * 206.25441 * 6 5 4 9 9 N 1.46905 * 109.47264 * 293.55093 * 8 6 5 10 10 C 1.46898 * 111.00186 * 179.97438 * 9 8 6 11 11 C 1.50697 * 109.47234 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99905 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00161 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99709 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00190 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47516 * 59.99906 * 15 13 11 17 17 H 1.48502 * 109.47255 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46968 * 300.00081 * 15 13 11 19 19 C 1.47843 * 110.99888 * 190.71516 * 3 2 1 20 20 H 1.09001 * 109.47264 * 300.00227 * 1 2 3 21 21 H 1.08999 * 109.46924 * 60.00740 * 1 2 3 22 22 H 1.08999 * 109.46987 * 180.02562 * 1 2 3 23 23 H 1.08991 * 109.47338 * 239.99746 * 2 1 3 24 24 H 1.08999 * 109.46924 * 119.99260 * 2 1 3 25 25 H 1.08997 * 109.88511 * 242.66682 * 4 3 2 26 26 H 1.08994 * 109.88544 * 3.85008 * 4 3 2 27 27 H 1.08999 * 110.70589 * 140.66668 * 5 4 3 28 28 H 1.08996 * 110.70709 * 263.73004 * 5 4 3 29 29 H 1.08998 * 109.47068 * 53.54717 * 8 6 5 30 30 H 1.09001 * 109.47175 * 173.54962 * 8 6 5 31 31 H 1.00899 * 110.99746 * 303.95086 * 9 8 6 32 32 H 1.09001 * 109.47080 * 300.00081 * 10 9 8 33 33 H 1.09005 * 109.46954 * 59.99578 * 10 9 8 34 34 H 0.97001 * 119.99715 * 180.02562 * 14 13 11 35 35 H 1.08998 * 110.37465 * 332.46027 * 19 3 2 36 36 H 1.09003 * 110.37404 * 94.80784 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7492 2.0411 1.2924 5 6 3.1019 2.5371 1.8453 6 6 3.9837 2.6377 0.5729 7 1 3.8064 3.5764 0.0481 8 6 5.4655 2.4782 0.9190 9 7 5.9048 3.6218 1.7299 10 6 7.3258 3.5023 2.0824 11 6 7.7394 4.6907 2.9116 12 1 7.0185 5.4579 3.1530 13 6 9.0377 4.7982 3.3630 14 7 9.9154 3.8637 3.0695 15 14 9.5501 6.2709 4.3914 16 1 8.7343 6.3169 5.6314 17 1 10.9867 6.1502 4.7477 18 1 9.3369 7.5170 3.6122 19 6 3.4749 1.4324 -0.2566 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 1.0764 2.8860 1.1457 26 1 1.3050 1.3265 1.9852 27 1 2.9911 3.5141 2.3156 28 1 3.5178 1.8167 2.5496 29 1 5.6099 1.5565 1.4825 30 1 6.0509 2.4380 0.0004 31 1 5.7217 4.4931 1.2553 32 1 7.4827 2.5876 2.6542 33 1 7.9244 3.4688 1.1721 34 1 10.8287 3.9391 3.3874 35 1 3.9501 0.5115 0.0813 36 1 3.6682 1.5932 -1.3173 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037484367.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:28 Heat of formation + Delta-G solvation = -10.103266 kcal Electronic energy + Delta-G solvation = -14062.685832 eV Core-core repulsion = 11773.934796 eV Total energy + Delta-G solvation = -2288.751036 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.13335 -35.56231 -33.34541 -32.06645 -29.31045 -29.08512 -26.45213 -23.57414 -22.92422 -21.36227 -20.45188 -19.77862 -16.45622 -16.16114 -15.64401 -14.71758 -14.40516 -14.22464 -13.78611 -13.39589 -13.11908 -12.88351 -12.45648 -12.13249 -11.72186 -11.46798 -11.30869 -11.21024 -11.03803 -10.87195 -10.79614 -10.54113 -10.38496 -10.29869 -9.84313 -9.17737 -8.46981 -8.31315 -7.26915 -6.02578 -4.04634 3.34110 3.37741 3.40997 3.97764 4.43074 4.70598 4.83880 4.99666 5.13599 5.22207 5.33197 5.36084 5.40020 5.53976 5.62360 5.72547 5.77043 5.82259 5.94314 5.97724 6.01856 6.08586 6.29749 6.30478 6.45077 6.64835 6.98828 7.10086 7.26196 7.43077 7.78980 8.13752 8.40848 8.62693 9.04602 9.60258 11.08595 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.081328 B = 0.004834 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.204186 B = 5790.716712 C = 5972.689340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 N -0.532 5.532 4 C 0.038 3.962 5 C -0.122 4.122 6 C -0.091 4.091 7 H 0.079 0.921 8 C 0.069 3.931 9 N -0.688 5.688 10 C 0.194 3.806 11 C -0.514 4.514 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.900 3.100 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.046 3.954 20 H 0.053 0.947 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.033 0.967 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.019 0.981 31 H 0.328 0.672 32 H 0.026 0.974 33 H -0.015 1.015 34 H 0.262 0.738 35 H 0.046 0.954 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.205 -6.011 -5.690 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 N -0.257 5.257 4 C -0.089 4.089 5 C -0.160 4.160 6 C -0.111 4.111 7 H 0.097 0.903 8 C -0.061 4.061 9 N -0.318 5.318 10 C 0.067 3.933 11 C -0.553 4.553 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.728 3.272 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.082 4.082 20 H 0.072 0.928 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.037 0.963 31 H 0.144 0.856 32 H 0.044 0.956 33 H 0.003 0.997 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.498 -6.100 -5.458 17.526 hybrid contribution 1.295 0.417 0.355 1.406 sum -14.203 -5.684 -5.103 16.126 Atomic orbital electron populations 1.21772 0.95031 1.01164 1.02429 1.22232 0.96057 0.89512 1.00559 1.63621 1.14729 1.15773 1.31572 1.22911 0.98148 0.98649 0.89233 1.22654 0.93562 1.02391 0.97391 1.22292 0.95283 0.97958 0.95546 0.90284 1.21816 0.92496 0.96384 0.95420 1.60643 1.23230 1.02872 1.45046 1.19545 0.81158 0.97833 0.94757 1.21158 0.95053 1.06633 1.32458 0.92003 1.24998 0.96521 0.96598 0.96497 1.69958 1.04004 1.33750 1.46132 0.86533 0.77296 0.82721 0.80671 1.20151 1.21349 1.20249 1.23046 0.86861 0.97924 1.00354 0.92769 0.92001 0.92608 0.91137 0.94851 0.90882 0.93074 0.90304 0.91455 0.91996 0.96312 0.85591 0.95554 0.99674 0.92866 0.93545 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.94 37.16 0.37 -0.94 16 2 C 0.04 0.47 5.26 -3.82 -0.02 0.45 16 3 N -0.53 -6.62 5.16 -231.26 -1.19 -7.81 16 4 C 0.04 0.47 6.21 -2.84 -0.02 0.45 16 5 C -0.12 -1.72 6.24 -24.91 -0.16 -1.87 16 6 C -0.09 -1.34 3.22 -88.48 -0.29 -1.62 16 7 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 8 C 0.07 1.24 5.13 -3.82 -0.02 1.22 16 9 N -0.69 -14.83 6.31 -115.05 -0.73 -15.56 16 10 C 0.19 5.16 5.44 -4.98 -0.03 5.14 16 11 C -0.51 -14.76 9.32 -34.44 -0.32 -15.08 16 12 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 15 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.05 0.60 6.15 -2.30 -0.01 0.59 16 20 H 0.05 0.49 7.14 -51.93 -0.37 0.12 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 24 H 0.03 0.36 7.96 -51.93 -0.41 -0.05 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.58 6.91 -51.93 -0.36 0.22 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 1.02 8.02 -51.93 -0.42 0.60 16 29 H 0.06 1.14 8.11 -51.93 -0.42 0.72 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.33 6.78 8.72 -39.29 -0.34 6.44 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 33 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.05 0.60 7.70 -51.93 -0.40 0.20 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 290.02 15.07 4.37 4.37 Total: -1.00 -29.76 290.02 -8.91 -38.67 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.49 Total: 0.10 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -0.59 Total: -10.18 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -1.18 Total: -49.80 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.76 -8.91 -38.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037484367.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.571 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds