Wall clock time and date at job start Mon Mar 30 2020 03:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47060 * 2 1 4 4 C 1.47446 * 111.00255 * 69.87065 * 3 2 1 5 5 C 1.54316 * 107.23320 * 123.25926 * 4 3 2 6 6 C 1.55139 * 103.01810 * 22.28197 * 5 4 3 7 7 H 1.09002 * 110.99125 * 82.47994 * 6 5 4 8 8 C 1.52999 * 110.99115 * 206.25441 * 6 5 4 9 9 N 1.46905 * 109.47264 * 293.55093 * 8 6 5 10 10 C 1.46898 * 111.00186 * 179.97438 * 9 8 6 11 11 C 1.50697 * 109.47234 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99905 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00161 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99709 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00190 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47516 * 59.99906 * 15 13 11 17 17 H 1.48502 * 109.47255 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46968 * 300.00081 * 15 13 11 19 19 C 1.47843 * 110.99888 * 190.71516 * 3 2 1 20 20 H 1.09001 * 109.47264 * 300.00227 * 1 2 3 21 21 H 1.08999 * 109.46924 * 60.00740 * 1 2 3 22 22 H 1.08999 * 109.46987 * 180.02562 * 1 2 3 23 23 H 1.08991 * 109.47338 * 239.99746 * 2 1 3 24 24 H 1.08999 * 109.46924 * 119.99260 * 2 1 3 25 25 H 1.08997 * 109.88511 * 242.66682 * 4 3 2 26 26 H 1.08994 * 109.88544 * 3.85008 * 4 3 2 27 27 H 1.08999 * 110.70589 * 140.66668 * 5 4 3 28 28 H 1.08996 * 110.70709 * 263.73004 * 5 4 3 29 29 H 1.08998 * 109.47068 * 53.54717 * 8 6 5 30 30 H 1.09001 * 109.47175 * 173.54962 * 8 6 5 31 31 H 1.00899 * 110.99746 * 303.95086 * 9 8 6 32 32 H 1.09001 * 109.47080 * 300.00081 * 10 9 8 33 33 H 1.09005 * 109.46954 * 59.99578 * 10 9 8 34 34 H 0.97001 * 119.99715 * 180.02562 * 14 13 11 35 35 H 1.08998 * 110.37465 * 332.46027 * 19 3 2 36 36 H 1.09003 * 110.37404 * 94.80784 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7492 2.0411 1.2924 5 6 3.1019 2.5371 1.8453 6 6 3.9837 2.6377 0.5729 7 1 3.8064 3.5764 0.0481 8 6 5.4655 2.4782 0.9190 9 7 5.9048 3.6218 1.7299 10 6 7.3258 3.5023 2.0824 11 6 7.7394 4.6907 2.9116 12 1 7.0185 5.4579 3.1530 13 6 9.0377 4.7982 3.3630 14 7 9.9154 3.8637 3.0695 15 14 9.5501 6.2709 4.3914 16 1 8.7343 6.3169 5.6314 17 1 10.9867 6.1502 4.7477 18 1 9.3369 7.5170 3.6122 19 6 3.4749 1.4324 -0.2566 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 1.0764 2.8860 1.1457 26 1 1.3050 1.3265 1.9852 27 1 2.9911 3.5141 2.3156 28 1 3.5178 1.8167 2.5496 29 1 5.6099 1.5565 1.4825 30 1 6.0509 2.4380 0.0004 31 1 5.7217 4.4931 1.2553 32 1 7.4827 2.5876 2.6542 33 1 7.9244 3.4688 1.1721 34 1 10.8287 3.9391 3.3874 35 1 3.9501 0.5115 0.0813 36 1 3.6682 1.5932 -1.3173 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037484367.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:28 Heat of formation + Delta-G solvation = -31.067843 kcal Electronic energy + Delta-G solvation = -14063.594925 eV Core-core repulsion = 11773.934796 eV Total energy + Delta-G solvation = -2289.660128 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.21329 -37.19841 -34.99771 -33.70391 -30.66794 -30.08887 -28.27727 -25.17436 -23.86739 -23.31657 -21.52629 -20.95655 -18.55338 -17.25799 -16.87417 -16.55542 -16.06386 -15.40969 -15.02307 -14.64541 -14.47942 -14.29287 -13.86439 -13.55414 -13.30845 -12.78517 -12.70355 -12.58466 -12.51320 -12.20254 -12.13253 -11.89653 -11.76162 -11.62467 -11.49531 -11.24417 -10.66220 -9.28703 -9.12044 -8.23486 -6.35135 1.41179 1.44973 1.53027 2.39687 3.00623 3.09790 3.41035 3.77140 3.92086 4.03888 4.24553 4.31872 4.34878 4.50961 4.56500 4.64683 4.69280 4.74652 4.79700 4.98647 4.99287 5.05289 5.08560 5.16124 5.24622 5.27623 5.37522 5.42228 5.60190 5.99018 6.01006 6.17295 6.43025 6.70934 6.88035 7.36064 8.88127 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.081328 B = 0.004834 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.204186 B = 5790.716712 C = 5972.689340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.041 3.959 3 N -0.538 5.538 4 C 0.045 3.955 5 C -0.121 4.121 6 C -0.085 4.085 7 H 0.083 0.917 8 C 0.073 3.927 9 N -0.684 5.684 10 C 0.208 3.792 11 C -0.537 4.537 12 H 0.066 0.934 13 C 0.000 4.000 14 N -0.936 5.936 15 Si 0.975 3.025 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.265 1.265 19 C 0.052 3.948 20 H 0.052 0.948 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.031 0.969 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.018 0.982 31 H 0.335 0.665 32 H -0.003 1.003 33 H -0.040 1.040 34 H 0.265 0.735 35 H 0.045 0.955 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.449 -5.419 -5.664 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.087 4.087 3 N -0.262 5.262 4 C -0.083 4.083 5 C -0.159 4.159 6 C -0.104 4.104 7 H 0.101 0.899 8 C -0.057 4.057 9 N -0.314 5.314 10 C 0.080 3.920 11 C -0.575 4.575 12 H 0.084 0.916 13 C -0.198 4.198 14 N -0.576 5.576 15 Si 0.799 3.201 16 H -0.193 1.193 17 H -0.208 1.208 18 H -0.190 1.190 19 C -0.077 4.077 20 H 0.071 0.929 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.095 0.905 24 H 0.049 0.951 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.152 0.848 32 H 0.015 0.985 33 H -0.022 1.022 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.773 -5.513 -5.446 18.476 hybrid contribution 1.662 0.169 0.314 1.700 sum -15.111 -5.344 -5.131 16.830 Atomic orbital electron populations 1.21736 0.93667 1.02221 1.02257 1.22338 0.97174 0.88409 1.00786 1.63678 1.13966 1.17068 1.31521 1.22868 0.96915 0.99150 0.89327 1.22612 0.94669 1.01796 0.96838 1.22180 0.92781 0.99093 0.96344 0.89905 1.21842 0.94829 0.94508 0.94571 1.60511 1.19884 1.04479 1.46532 1.19204 0.83628 0.96110 0.93089 1.21528 0.95669 1.07292 1.33044 0.91601 1.25989 0.96438 0.99771 0.97606 1.70092 1.04472 1.35833 1.47169 0.85351 0.76980 0.78838 0.78916 1.19276 1.20787 1.18985 1.22985 0.87399 0.96838 1.00439 0.92884 0.92171 0.90999 0.90475 0.95102 0.90113 0.92093 0.90879 0.92836 0.92927 0.96343 0.84784 0.98460 1.02244 0.92584 0.93680 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.94 71.98 0.72 -1.48 16 2 C 0.04 0.78 5.26 86.30 0.45 1.23 16 3 N -0.54 -12.33 5.16 -885.56 -4.57 -16.89 16 4 C 0.04 1.02 6.21 86.64 0.54 1.56 16 5 C -0.12 -3.31 6.24 31.77 0.20 -3.11 16 6 C -0.08 -2.40 3.22 -9.41 -0.03 -2.43 16 7 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 8 C 0.07 2.61 5.13 86.30 0.44 3.05 16 9 N -0.68 -29.81 6.31 -517.92 -3.27 -33.08 16 10 C 0.21 11.38 5.44 85.56 0.47 11.85 16 11 C -0.54 -31.09 9.32 25.60 0.24 -30.85 16 12 H 0.07 3.68 7.81 -2.91 -0.02 3.65 16 13 C 0.00 0.00 5.46 84.65 0.46 0.47 16 14 N -0.94 -57.26 13.29 21.45 0.28 -56.98 16 15 Si 0.98 44.54 29.54 68.60 2.03 46.57 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 19 C 0.05 1.27 6.15 86.77 0.53 1.80 16 20 H 0.05 0.84 7.14 -2.39 -0.02 0.82 16 21 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 22 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.08 1.37 8.07 -2.39 -0.02 1.35 16 24 H 0.03 0.61 7.96 -2.39 -0.02 0.59 16 25 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.06 1.27 6.91 -2.39 -0.02 1.25 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.05 1.61 8.02 -2.39 -0.02 1.59 16 29 H 0.05 1.98 8.11 -2.39 -0.02 1.96 16 30 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.34 13.83 8.72 -89.69 -0.78 13.05 16 32 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H -0.04 -2.36 8.14 -2.38 -0.02 -2.38 16 34 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.04 1.12 7.70 -2.39 -0.02 1.10 16 36 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -63.11 290.02 -1.27 -64.37 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.24 Total: 13.93 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 4.02 Total: -17.92 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -7.55 Total: -106.96 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -63.11 -1.27 -64.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037484367.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.306 kcal (2) G-P(sol) polarization free energy of solvation -63.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds