Wall clock time and date at job start Mon Mar 30 2020 03:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47240 * 2 1 4 4 C 1.50696 * 109.47461 * 120.00089 * 2 1 3 5 5 H 1.08002 * 120.00145 * 119.99396 * 4 2 1 6 6 C 1.37881 * 120.00135 * 300.00098 * 4 2 1 7 7 N 1.31521 * 119.99707 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00105 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47357 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.46991 * 120.00255 * 8 6 4 11 11 H 1.48501 * 109.47206 * 240.00057 * 8 6 4 12 12 N 1.46904 * 109.47145 * 240.00179 * 2 1 3 13 13 C 1.46899 * 110.99776 * 84.99864 * 12 2 1 14 14 C 1.53001 * 109.46836 * 180.02562 * 13 12 2 15 15 H 1.09003 * 110.63068 * 303.34526 * 14 13 12 16 16 C 1.55141 * 110.85566 * 180.14085 * 14 13 12 17 17 C 1.54905 * 101.65148 * 205.89216 * 16 14 13 18 18 N 1.47836 * 104.80025 * 37.07000 * 17 16 14 19 19 C 1.46901 * 111.00391 * 213.63693 * 18 17 16 20 20 C 1.47448 * 108.56370 * 335.90470 * 18 17 16 21 21 H 1.09000 * 109.47034 * 299.99643 * 1 2 3 22 22 H 1.08996 * 109.47159 * 60.00169 * 1 2 3 23 23 H 1.08999 * 109.47011 * 179.97438 * 1 2 3 24 24 H 0.96994 * 119.99807 * 180.02562 * 7 6 4 25 25 H 1.00895 * 111.00003 * 208.95085 * 12 2 1 26 26 H 1.08998 * 109.47475 * 60.00265 * 13 12 2 27 27 H 1.08997 * 109.47111 * 299.99931 * 13 12 2 28 28 H 1.09000 * 110.99218 * 323.98421 * 16 14 13 29 29 H 1.09000 * 110.99212 * 87.76096 * 16 14 13 30 30 H 1.09002 * 110.37707 * 278.23400 * 17 16 14 31 31 H 1.09009 * 110.37539 * 155.89827 * 17 16 14 32 32 H 1.09002 * 109.47401 * 180.83948 * 19 18 17 33 33 H 1.09001 * 109.46874 * 60.83961 * 19 18 17 34 34 H 1.09004 * 109.46970 * 300.84094 * 19 18 17 35 35 H 1.09001 * 109.88743 * 120.39857 * 20 18 17 36 36 H 1.09003 * 109.88565 * 241.58095 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0078 9 1 3.1456 -2.2877 3.6037 10 1 3.1467 -0.1873 4.8164 11 1 1.1663 -1.5868 4.8160 12 7 2.0197 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5950 -0.5331 -3.5745 15 1 3.5652 -0.9857 -3.3694 16 6 2.6774 0.4060 -4.8066 17 6 2.5332 -0.5992 -5.9763 18 7 1.5589 -1.6015 -5.4951 19 6 1.8690 -2.9351 -6.0271 20 6 1.5770 -1.6035 -4.0207 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7088 1.1612 3.4844 25 1 2.9173 -1.1204 -1.0288 26 1 2.7588 1.0463 -2.1182 27 1 1.0870 0.6163 -2.5525 28 1 1.8574 1.1242 -4.8057 29 1 3.6401 0.9158 -4.8454 30 1 3.4913 -1.0732 -6.1896 31 1 2.1520 -0.0956 -6.8648 32 1 1.1283 -3.6504 -5.6695 33 1 2.8600 -3.2393 -5.6902 34 1 1.8489 -2.9054 -7.1166 35 1 0.5870 -1.3563 -3.6374 36 1 1.8846 -2.5831 -3.6550 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:19 Heat of formation + Delta-G solvation = -4.460726 kcal Electronic energy + Delta-G solvation = -14421.563562 eV Core-core repulsion = 12133.057205 eV Total energy + Delta-G solvation = -2288.506357 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.96463 -35.84076 -33.15734 -31.58770 -29.43415 -27.66604 -25.83956 -25.14031 -23.10265 -20.96312 -19.94125 -19.62985 -16.48746 -16.08839 -15.24552 -14.79149 -14.27900 -13.87211 -13.69092 -13.21156 -13.11636 -12.54756 -12.39367 -11.58837 -11.55245 -11.34014 -11.20702 -11.09673 -10.87048 -10.79115 -10.54568 -10.34789 -10.15685 -10.08702 -9.77364 -8.79255 -8.46818 -8.22220 -7.23398 -6.01787 -4.08143 3.28792 3.36637 3.40744 4.14223 4.40393 4.74951 4.83045 5.06273 5.28138 5.31580 5.41994 5.46615 5.60182 5.70384 5.77248 5.84581 5.89403 5.94667 6.13428 6.19036 6.36340 6.47920 6.66753 6.92056 7.06119 7.16844 7.17245 7.26623 7.53505 7.79396 7.92197 8.29606 8.41285 8.69639 9.03143 9.57856 11.04608 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055909 B = 0.005971 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.694217 B = 4688.396809 C = 4820.653914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.517 4.517 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.688 5.688 13 C 0.072 3.928 14 C -0.104 4.104 15 H 0.068 0.932 16 C -0.126 4.126 17 C 0.042 3.958 18 N -0.541 5.541 19 C 0.022 3.978 20 C 0.059 3.941 21 H 0.079 0.921 22 H 0.004 0.996 23 H 0.031 0.969 24 H 0.260 0.740 25 H 0.328 0.672 26 H 0.018 0.982 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.205 -2.695 -13.713 14.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.017 0.983 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.319 5.319 13 C -0.058 4.058 14 C -0.124 4.124 15 H 0.087 0.913 16 C -0.164 4.164 17 C -0.086 4.086 18 N -0.265 5.265 19 C -0.127 4.127 20 C -0.068 4.068 21 H 0.098 0.902 22 H 0.023 0.977 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.145 0.855 26 H 0.037 0.963 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.988 -2.713 -13.909 14.310 hybrid contribution 1.890 -0.139 1.402 2.357 sum 3.877 -2.852 -12.507 13.402 Atomic orbital electron populations 1.21701 0.97866 0.99304 0.99310 1.19103 0.92646 0.92264 0.85662 0.98291 1.21310 1.31314 1.12431 0.90507 0.92240 1.24930 0.95074 0.95014 0.99058 1.69913 1.36701 1.22965 1.23318 0.86471 0.78601 0.79591 0.82902 1.19800 1.21122 1.20964 1.60731 1.31843 1.33204 1.06082 1.21865 0.99638 0.93719 0.90608 1.22399 0.98795 0.96196 0.95016 0.91348 1.22742 1.02053 0.97678 0.93941 1.23021 0.93822 0.93467 0.98264 1.63632 1.48291 1.05705 1.08852 1.22508 0.99231 0.90920 1.00063 1.22778 1.00417 0.98363 0.85253 0.90198 0.97701 0.94994 0.93004 0.85545 0.96343 0.91546 0.90520 0.91178 0.94008 0.90662 0.91430 0.95750 0.91930 0.89690 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.13 9.19 37.16 0.34 -2.79 16 2 C 0.21 5.40 2.60 -68.86 -0.18 5.23 16 3 H 0.00 -0.02 7.80 -51.92 -0.40 -0.42 16 4 C -0.52 -14.30 8.59 -34.44 -0.30 -14.60 16 5 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.68 11.32 55.43 0.63 -25.05 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.69 -14.70 6.11 -107.95 -0.66 -15.36 16 13 C 0.07 1.31 4.81 -3.82 -0.02 1.29 16 14 C -0.10 -1.55 3.12 -88.80 -0.28 -1.82 16 15 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 16 C -0.13 -1.57 6.53 -24.59 -0.16 -1.73 16 17 C 0.04 0.50 6.73 -2.30 -0.02 0.48 16 18 N -0.54 -7.30 5.44 -239.52 -1.30 -8.60 16 19 C 0.02 0.24 9.12 60.07 0.55 0.79 16 20 C 0.06 0.89 6.31 -2.84 -0.02 0.87 16 21 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 22 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.33 6.87 8.22 -39.29 -0.32 6.54 16 26 H 0.02 0.34 8.05 -51.93 -0.42 -0.07 16 27 H 0.07 1.25 7.35 -51.93 -0.38 0.87 16 28 H 0.08 0.98 8.05 -51.93 -0.42 0.56 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.46 7.78 -51.93 -0.40 0.06 16 31 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.02 0.27 8.10 -51.93 -0.42 -0.15 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.44 7.77 -51.93 -0.40 1.04 16 36 H 0.05 0.84 7.58 -51.93 -0.39 0.44 16 LS Contribution 285.07 15.07 4.30 4.30 Total: -1.00 -28.50 285.07 -8.57 -37.07 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.34 Total: 1.97 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -0.17 Total: -10.69 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -1.34 Total: -49.00 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.50 -8.57 -37.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.609 kcal (2) G-P(sol) polarization free energy of solvation -28.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds