Wall clock time and date at job start Mon Mar 30 2020 03:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47240 * 2 1 4 4 C 1.50696 * 109.47461 * 120.00089 * 2 1 3 5 5 H 1.08002 * 120.00145 * 119.99396 * 4 2 1 6 6 C 1.37881 * 120.00135 * 300.00098 * 4 2 1 7 7 N 1.31521 * 119.99707 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00105 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47357 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.46991 * 120.00255 * 8 6 4 11 11 H 1.48501 * 109.47206 * 240.00057 * 8 6 4 12 12 N 1.46904 * 109.47145 * 240.00179 * 2 1 3 13 13 C 1.46899 * 110.99776 * 84.99864 * 12 2 1 14 14 C 1.53001 * 109.46836 * 180.02562 * 13 12 2 15 15 H 1.09003 * 110.63068 * 303.34526 * 14 13 12 16 16 C 1.55141 * 110.85566 * 180.14085 * 14 13 12 17 17 C 1.54905 * 101.65148 * 205.89216 * 16 14 13 18 18 N 1.47836 * 104.80025 * 37.07000 * 17 16 14 19 19 C 1.46901 * 111.00391 * 213.63693 * 18 17 16 20 20 C 1.47448 * 108.56370 * 335.90470 * 18 17 16 21 21 H 1.09000 * 109.47034 * 299.99643 * 1 2 3 22 22 H 1.08996 * 109.47159 * 60.00169 * 1 2 3 23 23 H 1.08999 * 109.47011 * 179.97438 * 1 2 3 24 24 H 0.96994 * 119.99807 * 180.02562 * 7 6 4 25 25 H 1.00895 * 111.00003 * 208.95085 * 12 2 1 26 26 H 1.08998 * 109.47475 * 60.00265 * 13 12 2 27 27 H 1.08997 * 109.47111 * 299.99931 * 13 12 2 28 28 H 1.09000 * 110.99218 * 323.98421 * 16 14 13 29 29 H 1.09000 * 110.99212 * 87.76096 * 16 14 13 30 30 H 1.09002 * 110.37707 * 278.23400 * 17 16 14 31 31 H 1.09009 * 110.37539 * 155.89827 * 17 16 14 32 32 H 1.09002 * 109.47401 * 180.83948 * 19 18 17 33 33 H 1.09001 * 109.46874 * 60.83961 * 19 18 17 34 34 H 1.09004 * 109.46970 * 300.84094 * 19 18 17 35 35 H 1.09001 * 109.88743 * 120.39857 * 20 18 17 36 36 H 1.09003 * 109.88565 * 241.58095 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0078 9 1 3.1456 -2.2877 3.6037 10 1 3.1467 -0.1873 4.8164 11 1 1.1663 -1.5868 4.8160 12 7 2.0197 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5950 -0.5331 -3.5745 15 1 3.5652 -0.9857 -3.3694 16 6 2.6774 0.4060 -4.8066 17 6 2.5332 -0.5992 -5.9763 18 7 1.5589 -1.6015 -5.4951 19 6 1.8690 -2.9351 -6.0271 20 6 1.5770 -1.6035 -4.0207 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7088 1.1612 3.4844 25 1 2.9173 -1.1204 -1.0288 26 1 2.7588 1.0463 -2.1182 27 1 1.0870 0.6163 -2.5525 28 1 1.8574 1.1242 -4.8057 29 1 3.6401 0.9158 -4.8454 30 1 3.4913 -1.0732 -6.1896 31 1 2.1520 -0.0956 -6.8648 32 1 1.1283 -3.6504 -5.6695 33 1 2.8600 -3.2393 -5.6902 34 1 1.8489 -2.9054 -7.1166 35 1 0.5870 -1.3563 -3.6374 36 1 1.8846 -2.5831 -3.6550 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:19 Heat of formation + Delta-G solvation = -24.344690 kcal Electronic energy + Delta-G solvation = -14422.425795 eV Core-core repulsion = 12133.057205 eV Total energy + Delta-G solvation = -2289.368591 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.09148 -37.60785 -34.89201 -33.11089 -30.86456 -29.17582 -27.41727 -26.82570 -24.51698 -22.10396 -21.55277 -21.13717 -18.50816 -17.23772 -16.85076 -16.27869 -15.81938 -15.42739 -15.00843 -14.69928 -14.34282 -14.07955 -13.74672 -13.27439 -12.95294 -12.89170 -12.73588 -12.45332 -12.43005 -12.21565 -12.19490 -12.17136 -11.67709 -11.58514 -11.45502 -10.86788 -10.58246 -9.24642 -9.04097 -8.13960 -6.28396 1.41066 1.42889 1.54717 2.41145 3.14311 3.14552 3.46814 3.74963 3.90257 4.04875 4.40975 4.49636 4.52095 4.55976 4.59209 4.72398 4.80939 4.84159 4.90381 5.00438 5.03525 5.07916 5.15291 5.20450 5.23682 5.43094 5.47332 5.66552 5.85747 6.03082 6.18507 6.21709 6.46949 6.77515 7.00234 7.42303 8.92107 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055909 B = 0.005971 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.694217 B = 4688.396809 C = 4820.653914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.215 3.785 3 H -0.033 1.033 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.684 5.684 13 C 0.077 3.923 14 C -0.098 4.098 15 H 0.074 0.926 16 C -0.121 4.121 17 C 0.044 3.956 18 N -0.554 5.554 19 C 0.021 3.979 20 C 0.065 3.935 21 H 0.056 0.944 22 H 0.019 0.981 23 H 0.027 0.973 24 H 0.263 0.737 25 H 0.331 0.669 26 H 0.014 0.986 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.164 -3.452 -14.651 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 H -0.015 1.015 4 C -0.575 4.575 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.314 5.314 13 C -0.053 4.053 14 C -0.118 4.118 15 H 0.092 0.908 16 C -0.159 4.159 17 C -0.083 4.083 18 N -0.279 5.279 19 C -0.127 4.127 20 C -0.063 4.063 21 H 0.075 0.925 22 H 0.038 0.962 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.148 0.852 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.954 -3.477 -14.875 15.559 hybrid contribution 1.574 0.120 1.634 2.272 sum 4.528 -3.357 -13.241 14.391 Atomic orbital electron populations 1.21525 0.97816 0.98794 0.98880 1.18916 0.92696 0.90695 0.87084 1.01530 1.21623 1.31629 1.12653 0.91611 0.92224 1.25764 0.95157 0.95685 1.02140 1.70039 1.37507 1.24164 1.24134 0.85407 0.78096 0.78564 0.78930 1.19039 1.20580 1.20595 1.60640 1.32042 1.33393 1.05338 1.21866 0.99195 0.93515 0.90765 1.22306 0.98674 0.96486 0.94318 0.90776 1.22740 1.02902 0.97427 0.92850 1.23080 0.94175 0.92837 0.98184 1.63606 1.49464 1.07257 1.07533 1.22559 0.99357 0.89742 1.01085 1.22597 0.98986 0.97999 0.86703 0.92534 0.96161 0.95347 0.92830 0.85200 0.96792 0.92558 0.90998 0.89418 0.92688 0.89213 0.91581 0.95366 0.90113 0.92162 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.75 9.19 71.98 0.66 -5.09 16 2 C 0.21 11.19 2.60 44.17 0.11 11.31 16 3 H -0.03 -1.89 7.80 -2.38 -0.02 -1.91 16 4 C -0.54 -29.87 8.59 25.60 0.22 -29.65 16 5 H 0.06 3.24 7.62 -2.91 -0.02 3.22 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -53.61 11.32 21.45 0.24 -53.37 16 8 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 9 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 N -0.68 -29.32 6.11 -495.45 -3.03 -32.35 16 13 C 0.08 2.76 4.81 86.30 0.42 3.18 16 14 C -0.10 -2.78 3.12 -9.61 -0.03 -2.81 16 15 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 16 C -0.12 -2.76 6.53 31.98 0.21 -2.56 16 17 C 0.04 0.93 6.73 86.77 0.58 1.51 16 18 N -0.55 -13.89 5.44 -911.69 -4.96 -18.86 16 19 C 0.02 0.42 9.12 127.69 1.16 1.59 16 20 C 0.06 1.90 6.31 86.64 0.55 2.44 16 21 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 22 H 0.02 0.92 7.45 -2.39 -0.02 0.91 16 23 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 25 H 0.33 13.81 8.22 -89.70 -0.74 13.07 16 26 H 0.01 0.52 8.05 -2.39 -0.02 0.50 16 27 H 0.06 2.14 7.35 -2.39 -0.02 2.12 16 28 H 0.07 1.72 8.05 -2.39 -0.02 1.71 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.05 1.02 7.78 -2.39 -0.02 1.00 16 31 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.03 0.55 8.10 -2.39 -0.02 0.53 16 34 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.06 2.05 7.77 -2.39 -0.02 2.03 16 36 H 0.05 1.49 7.58 -2.39 -0.02 1.47 16 Total: -1.00 -60.25 285.07 -1.10 -61.34 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.29 Total: 16.47 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 4.33 Total: -18.99 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -7.75 Total: -104.57 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -60.25 -1.10 -61.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.000 kcal (2) G-P(sol) polarization free energy of solvation -60.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds