Wall clock time and date at job start Mon Mar 30 2020 03:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46968 * 2 1 4 4 C 1.50698 * 109.47036 * 239.99327 * 2 1 3 5 5 H 1.08000 * 119.99959 * 239.99726 * 4 2 1 6 6 C 1.37875 * 119.99820 * 60.00185 * 4 2 1 7 7 N 1.31510 * 119.99943 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99946 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47020 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47174 * 119.99881 * 8 6 4 11 11 H 1.48493 * 109.47337 * 240.00376 * 8 6 4 12 12 N 1.46904 * 109.46608 * 119.99649 * 2 1 3 13 13 C 1.46898 * 110.99822 * 274.99402 * 12 2 1 14 14 C 1.52999 * 109.47292 * 180.02562 * 13 12 2 15 15 H 1.09001 * 110.90840 * 302.59537 * 14 13 12 16 16 C 1.55138 * 110.99653 * 178.72394 * 14 13 12 17 17 C 1.54320 * 103.02210 * 206.25748 * 16 14 13 18 18 N 1.47437 * 107.23257 * 22.28526 * 17 16 14 19 19 C 1.46901 * 111.00223 * 123.25511 * 18 17 16 20 20 C 1.47846 * 108.56923 * 0.98995 * 18 17 16 21 21 H 1.09001 * 109.47236 * 300.00028 * 1 2 3 22 22 H 1.09001 * 109.47125 * 60.00738 * 1 2 3 23 23 H 1.09004 * 109.47217 * 180.02562 * 1 2 3 24 24 H 0.97002 * 119.99789 * 179.97438 * 7 6 4 25 25 H 1.00904 * 110.99456 * 151.05255 * 12 2 1 26 26 H 1.09006 * 109.47130 * 60.01158 * 13 12 2 27 27 H 1.08997 * 109.47928 * 300.00824 * 13 12 2 28 28 H 1.09000 * 110.70480 * 87.87387 * 16 14 13 29 29 H 1.09005 * 110.70206 * 324.64424 * 16 14 13 30 30 H 1.08998 * 109.88703 * 262.87492 * 17 16 14 31 31 H 1.08998 * 110.02181 * 141.76373 * 17 16 14 32 32 H 1.08999 * 109.46970 * 299.15645 * 19 18 17 33 33 H 1.09005 * 109.47033 * 59.15794 * 19 18 17 34 34 H 1.09001 * 109.47165 * 179.15514 * 19 18 17 35 35 H 1.08995 * 110.38030 * 94.73340 * 20 18 17 36 36 H 1.09000 * 110.37255 * 217.07995 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6992 -0.2396 -2.4827 7 7 0.9428 0.8294 -2.6034 8 14 2.3224 -1.1199 -4.0078 9 1 3.1473 -2.2867 -3.6035 10 1 1.1677 -1.5870 -4.8163 11 1 3.1472 -0.1863 -4.8159 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5961 -0.5326 3.5743 15 1 1.9612 -1.3902 3.7971 16 6 2.7068 0.4104 4.8012 17 6 3.8051 -0.2574 5.6550 18 7 4.6069 -1.1029 4.7518 19 6 6.0262 -0.7270 4.8003 20 6 4.0699 -0.9686 3.3808 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 0.7088 1.1609 -3.4844 25 1 2.9173 -1.1204 1.0289 26 1 1.0870 0.6165 2.5526 27 1 2.7588 1.0463 2.1182 28 1 1.7635 0.4463 5.3461 29 1 3.0130 1.4100 4.4925 30 1 3.3490 -0.8722 6.4310 31 1 4.4387 0.5039 6.1100 32 1 6.1387 0.3090 4.4808 33 1 6.3960 -0.8350 5.8200 34 1 6.5969 -1.3761 4.1362 35 1 4.6217 -0.2070 2.8300 36 1 4.1175 -1.9245 2.8593 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871524.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:21 Heat of formation + Delta-G solvation = -25.016161 kcal Electronic energy + Delta-G solvation = -14426.441796 eV Core-core repulsion = 12137.044088 eV Total energy + Delta-G solvation = -2289.397708 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.14716 -37.61615 -34.90910 -33.12575 -30.89737 -29.11933 -27.52194 -26.90265 -24.61150 -22.06944 -21.44814 -21.15477 -18.57884 -17.27834 -16.90995 -16.34179 -15.80788 -15.41620 -15.07459 -14.61951 -14.31945 -14.16615 -13.67753 -13.54596 -13.07021 -12.89736 -12.73757 -12.51996 -12.50622 -12.24627 -12.19185 -12.03930 -11.70247 -11.51744 -11.47511 -10.87182 -10.59136 -9.30228 -9.07510 -8.14674 -6.29071 1.40788 1.42653 1.54649 2.40814 3.05632 3.13836 3.51679 3.71093 3.79989 4.10713 4.31783 4.45601 4.49305 4.53167 4.57831 4.74523 4.76335 4.77107 4.90209 4.94161 4.97795 5.07041 5.08607 5.19926 5.22713 5.38582 5.48627 5.66404 5.85083 5.96384 6.12935 6.21250 6.45941 6.76692 6.98919 7.41638 8.91383 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045435 B = 0.006432 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.123704 B = 4352.407376 C = 4795.490118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.213 3.787 3 H -0.033 1.033 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.280 1.280 12 N -0.686 5.686 13 C 0.076 3.924 14 C -0.086 4.086 15 H 0.084 0.916 16 C -0.132 4.132 17 C 0.043 3.957 18 N -0.548 5.548 19 C 0.019 3.981 20 C 0.049 3.951 21 H 0.022 0.978 22 H 0.056 0.944 23 H 0.028 0.972 24 H 0.263 0.737 25 H 0.332 0.668 26 H 0.061 0.939 27 H 0.009 0.991 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.025 0.975 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.036 0.964 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.310 -1.037 13.814 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 H -0.016 1.016 4 C -0.576 4.576 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.190 1.190 10 H -0.205 1.205 11 H -0.206 1.206 12 N -0.316 5.316 13 C -0.054 4.054 14 C -0.105 4.105 15 H 0.103 0.897 16 C -0.171 4.171 17 C -0.085 4.085 18 N -0.272 5.272 19 C -0.129 4.129 20 C -0.079 4.079 21 H 0.041 0.959 22 H 0.075 0.925 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.149 0.851 26 H 0.079 0.921 27 H 0.027 0.973 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.597 -1.687 14.021 15.190 hybrid contribution 0.948 1.244 -1.599 2.237 sum 6.544 -0.444 12.422 14.047 Atomic orbital electron populations 1.21538 0.97680 0.98900 0.99009 1.18935 0.92832 0.90679 0.87079 1.01550 1.21622 1.31667 1.12674 0.91629 0.92265 1.25756 0.95145 0.95684 1.02120 1.70033 1.37496 1.24132 1.24150 0.85417 0.78150 0.78587 0.78926 1.19033 1.20491 1.20575 1.60657 1.32188 1.33365 1.05421 1.21857 0.99354 0.93363 0.90849 1.22229 0.95802 0.98623 0.93875 0.89719 1.22804 1.00378 0.98256 0.95693 1.22876 0.94658 0.95207 0.95712 1.63583 1.03622 1.53410 1.06570 1.22588 0.88492 0.98647 1.03188 1.23015 0.94340 1.00345 0.90170 0.95948 0.92476 0.95266 0.92806 0.85079 0.92056 0.97313 0.89238 0.91712 0.89676 0.91532 0.95687 0.89872 0.91388 0.94611 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.78 9.19 71.98 0.66 -5.11 16 2 C 0.21 11.16 2.60 44.17 0.11 11.27 16 3 H -0.03 -1.91 7.80 -2.39 -0.02 -1.93 16 4 C -0.54 -30.05 8.59 25.60 0.22 -29.83 16 5 H 0.06 3.24 7.62 -2.91 -0.02 3.22 16 6 C 0.01 0.67 5.30 84.65 0.45 1.12 16 7 N -0.92 -53.53 11.32 21.45 0.24 -53.29 16 8 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 N -0.69 -29.74 6.30 -495.45 -3.12 -32.86 16 13 C 0.08 2.74 4.99 86.30 0.43 3.17 16 14 C -0.09 -2.47 3.29 -9.41 -0.03 -2.51 16 15 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 16 C -0.13 -3.02 6.41 31.78 0.20 -2.81 16 17 C 0.04 0.89 6.90 86.65 0.60 1.49 16 18 N -0.55 -13.40 5.44 -911.70 -4.96 -18.36 16 19 C 0.02 0.39 9.13 127.69 1.17 1.55 16 20 C 0.05 1.38 5.42 86.78 0.47 1.86 16 21 H 0.02 1.01 7.45 -2.39 -0.02 0.99 16 22 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 23 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 25 H 0.33 14.08 7.39 -89.69 -0.66 13.42 16 26 H 0.06 2.25 7.44 -2.38 -0.02 2.23 16 27 H 0.01 0.33 8.01 -2.39 -0.02 0.31 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.49 8.04 -2.38 -0.02 1.47 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.18 7.58 -2.39 -0.02 1.17 16 32 H 0.02 0.50 8.09 -2.39 -0.02 0.48 16 33 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 1.06 7.63 -2.39 -0.02 1.04 16 36 H 0.07 2.22 8.05 -2.39 -0.02 2.20 16 Total: -1.00 -60.30 284.07 -1.17 -61.47 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.37 Total: 17.03 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 4.28 Total: -19.80 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -7.84 Total: -104.52 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -60.30 -1.17 -61.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871524.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.455 kcal (2) G-P(sol) polarization free energy of solvation -60.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds