Wall clock time and date at job start Mon Mar 30 2020 03:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46824 * 2 1 4 4 C 1.50703 * 109.47176 * 119.99479 * 2 1 3 5 5 H 1.08000 * 120.00144 * 120.00304 * 4 2 1 6 6 C 1.37877 * 120.00087 * 300.00413 * 4 2 1 7 7 N 1.31512 * 120.00068 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99990 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47230 * 90.00057 * 8 6 4 10 10 H 1.48497 * 109.47128 * 209.99874 * 8 6 4 11 11 H 1.48495 * 109.47167 * 329.99786 * 8 6 4 12 12 N 1.46899 * 109.47512 * 239.99935 * 2 1 3 13 13 C 1.46894 * 110.99951 * 84.99844 * 12 2 1 14 14 C 1.53006 * 109.46956 * 180.02562 * 13 12 2 15 15 H 1.08988 * 110.62787 * 56.64959 * 14 13 12 16 16 C 1.55141 * 110.70512 * 179.97438 * 14 13 12 17 17 C 1.54903 * 101.65348 * 154.03502 * 16 14 13 18 18 N 1.47848 * 104.79467 * 322.92844 * 17 16 14 19 19 C 1.46898 * 111.00188 * 146.36644 * 18 17 16 20 20 C 1.47437 * 108.56669 * 24.09430 * 18 17 16 21 21 H 1.09001 * 109.46949 * 300.00439 * 1 2 3 22 22 H 1.08998 * 109.46694 * 60.00259 * 1 2 3 23 23 H 1.09001 * 109.46367 * 180.02562 * 1 2 3 24 24 H 0.97006 * 120.00033 * 179.97438 * 7 6 4 25 25 H 1.00900 * 110.99574 * 321.04587 * 12 2 1 26 26 H 1.09000 * 109.47620 * 60.00144 * 13 12 2 27 27 H 1.09002 * 109.47306 * 300.00028 * 13 12 2 28 28 H 1.09001 * 110.98797 * 272.12266 * 16 14 13 29 29 H 1.09003 * 110.99469 * 35.93973 * 16 14 13 30 30 H 1.08999 * 110.37438 * 204.10369 * 17 16 14 31 31 H 1.09002 * 110.47019 * 81.80441 * 17 16 14 32 32 H 1.09005 * 109.47105 * 299.15582 * 19 18 17 33 33 H 1.09004 * 109.47313 * 59.15258 * 19 18 17 34 34 H 1.09001 * 109.47318 * 179.15931 * 19 18 17 35 35 H 1.08997 * 109.89184 * 239.60236 * 20 18 17 36 36 H 1.09005 * 110.02270 * 118.49681 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3214 -1.1201 4.0080 9 1 3.6296 -0.5456 4.4125 10 1 1.3431 -0.9490 5.1121 11 1 2.4859 -2.5659 3.7122 12 7 2.0198 -0.6925 -1.1994 13 6 2.0826 0.2226 -2.3468 14 6 2.5953 -0.5333 -3.5744 15 1 1.9646 -1.3969 -3.7846 16 6 2.6723 0.4079 -4.8053 17 6 3.7748 -0.2749 -5.6527 18 7 4.7527 -0.7785 -4.6648 19 6 5.3642 -2.0335 -5.1219 20 6 4.0631 -0.9657 -3.3751 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 0.7088 1.1615 3.4844 25 1 1.4497 -1.4979 -1.4099 26 1 2.7589 1.0462 -2.1182 27 1 1.0872 0.6162 -2.5525 28 1 1.7237 0.4275 -5.3417 29 1 2.9731 1.4131 -4.5101 30 1 4.2456 0.4494 -6.3174 31 1 3.3567 -1.1010 -6.2278 32 1 4.5900 -2.7907 -5.2462 33 1 5.8660 -1.8671 -6.0751 34 1 6.0901 -2.3740 -4.3836 35 1 4.5318 -0.3461 -2.6106 36 1 4.1039 -2.0139 -3.0787 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871525.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:24 Heat of formation + Delta-G solvation = -3.311659 kcal Electronic energy + Delta-G solvation = -14416.504905 eV Core-core repulsion = 12128.048375 eV Total energy + Delta-G solvation = -2288.456530 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.96061 -35.93563 -33.13421 -31.60580 -29.45712 -27.55160 -25.76681 -25.08936 -23.08248 -20.97112 -20.10545 -19.85865 -16.32704 -16.02632 -15.23568 -14.65798 -14.33943 -14.03657 -13.51838 -13.29032 -13.08926 -12.43321 -12.29583 -11.72513 -11.54142 -11.29111 -11.19771 -11.12664 -10.93665 -10.85311 -10.54196 -10.37830 -10.28110 -10.08603 -9.74542 -8.96305 -8.33194 -8.20834 -7.18391 -5.95510 -3.98583 3.34974 3.40896 3.45043 4.15375 4.46042 4.75496 4.83330 5.06193 5.30388 5.36096 5.42478 5.47442 5.60377 5.70163 5.77387 5.85842 5.89026 5.93626 6.13253 6.19119 6.34351 6.49307 6.67408 6.72667 6.86326 7.07431 7.13125 7.18348 7.40673 7.76289 7.91805 8.31075 8.57570 8.65855 9.08729 9.66723 11.11604 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045902 B = 0.006408 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.854508 B = 4368.480868 C = 4813.546063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.683 5.683 13 C 0.072 3.928 14 C -0.104 4.104 15 H 0.067 0.933 16 C -0.125 4.125 17 C 0.042 3.958 18 N -0.540 5.540 19 C 0.022 3.978 20 C 0.058 3.942 21 H 0.088 0.912 22 H 0.004 0.996 23 H 0.027 0.973 24 H 0.259 0.741 25 H 0.322 0.678 26 H 0.067 0.933 27 H 0.018 0.982 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.024 0.976 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.240 -2.680 -13.860 14.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.312 5.312 13 C -0.059 4.059 14 C -0.124 4.124 15 H 0.086 0.914 16 C -0.164 4.164 17 C -0.086 4.086 18 N -0.264 5.264 19 C -0.127 4.127 20 C -0.069 4.069 21 H 0.107 0.893 22 H 0.023 0.977 23 H 0.046 0.954 24 H 0.069 0.931 25 H 0.138 0.862 26 H 0.085 0.915 27 H 0.036 0.964 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.254 -2.132 -13.479 14.294 hybrid contribution -1.393 -0.948 0.557 1.775 sum 2.861 -3.080 -12.922 13.588 Atomic orbital electron populations 1.22426 1.00830 0.99099 1.00421 1.19167 0.89508 0.94428 0.86604 0.94930 1.21169 1.30036 1.12380 0.89635 0.91985 1.24957 0.95371 0.95240 0.99046 1.69887 1.37404 1.23277 1.23277 0.86510 0.78446 0.80003 0.82486 1.20762 1.21456 1.19982 1.60812 1.57895 1.09020 1.03518 1.21865 0.98197 0.95732 0.90080 1.22396 0.96942 0.98015 0.95037 0.91421 1.22741 0.98024 0.99717 0.95912 1.23021 0.92319 0.98448 0.94792 1.63635 1.31534 1.27875 1.03399 1.22507 0.98923 0.90453 1.00835 1.22781 0.92223 1.01031 0.90828 0.89312 0.97694 0.95428 0.93119 0.86157 0.91467 0.96407 0.91235 0.90470 0.90685 0.94042 0.95785 0.91946 0.91401 0.89537 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.94 37.16 0.33 -3.76 16 2 C 0.21 5.34 2.57 -68.86 -0.18 5.16 16 3 H 0.03 0.91 7.80 -51.93 -0.40 0.51 16 4 C -0.49 -13.78 8.84 -34.44 -0.30 -14.09 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.98 11.32 55.43 0.63 -25.35 16 8 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.68 -14.45 6.04 -107.95 -0.65 -15.11 16 13 C 0.07 1.28 4.80 -3.82 -0.02 1.26 16 14 C -0.10 -1.53 3.13 -88.79 -0.28 -1.81 16 15 H 0.07 0.98 8.14 -51.94 -0.42 0.56 16 16 C -0.13 -1.56 6.52 -24.59 -0.16 -1.72 16 17 C 0.04 0.50 6.73 -2.30 -0.02 0.48 16 18 N -0.54 -7.36 5.44 -239.52 -1.30 -8.66 16 19 C 0.02 0.25 9.12 60.06 0.55 0.79 16 20 C 0.06 0.89 6.31 -2.84 -0.02 0.87 16 21 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 22 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 23 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.32 6.52 8.47 -39.29 -0.33 6.19 16 26 H 0.07 1.27 7.98 -51.93 -0.41 0.86 16 27 H 0.02 0.32 7.44 -51.93 -0.39 -0.06 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.99 8.05 -51.93 -0.42 0.57 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.46 7.78 -51.93 -0.40 0.05 16 32 H 0.02 0.26 8.10 -51.93 -0.42 -0.16 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.50 7.77 -51.93 -0.40 1.09 16 36 H 0.05 0.85 7.59 -51.93 -0.39 0.46 16 LS Contribution 285.39 15.07 4.30 4.30 Total: -1.00 -28.53 285.39 -8.60 -37.13 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.36 Total: 2.40 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -0.19 Total: -11.39 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -1.33 Total: -49.12 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.53 -8.60 -37.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871525.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.814 kcal (2) G-P(sol) polarization free energy of solvation -28.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds