Wall clock time and date at job start Mon Mar 30 2020 03:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46824 * 2 1 4 4 C 1.50703 * 109.47176 * 119.99479 * 2 1 3 5 5 H 1.08000 * 120.00144 * 120.00304 * 4 2 1 6 6 C 1.37877 * 120.00087 * 300.00413 * 4 2 1 7 7 N 1.31512 * 120.00068 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99990 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47230 * 90.00057 * 8 6 4 10 10 H 1.48497 * 109.47128 * 209.99874 * 8 6 4 11 11 H 1.48495 * 109.47167 * 329.99786 * 8 6 4 12 12 N 1.46899 * 109.47512 * 239.99935 * 2 1 3 13 13 C 1.46894 * 110.99951 * 84.99844 * 12 2 1 14 14 C 1.53006 * 109.46956 * 180.02562 * 13 12 2 15 15 H 1.08988 * 110.62787 * 56.64959 * 14 13 12 16 16 C 1.55141 * 110.70512 * 179.97438 * 14 13 12 17 17 C 1.54903 * 101.65348 * 154.03502 * 16 14 13 18 18 N 1.47848 * 104.79467 * 322.92844 * 17 16 14 19 19 C 1.46898 * 111.00188 * 146.36644 * 18 17 16 20 20 C 1.47437 * 108.56669 * 24.09430 * 18 17 16 21 21 H 1.09001 * 109.46949 * 300.00439 * 1 2 3 22 22 H 1.08998 * 109.46694 * 60.00259 * 1 2 3 23 23 H 1.09001 * 109.46367 * 180.02562 * 1 2 3 24 24 H 0.97006 * 120.00033 * 179.97438 * 7 6 4 25 25 H 1.00900 * 110.99574 * 321.04587 * 12 2 1 26 26 H 1.09000 * 109.47620 * 60.00144 * 13 12 2 27 27 H 1.09002 * 109.47306 * 300.00028 * 13 12 2 28 28 H 1.09001 * 110.98797 * 272.12266 * 16 14 13 29 29 H 1.09003 * 110.99469 * 35.93973 * 16 14 13 30 30 H 1.08999 * 110.37438 * 204.10369 * 17 16 14 31 31 H 1.09002 * 110.47019 * 81.80441 * 17 16 14 32 32 H 1.09005 * 109.47105 * 299.15582 * 19 18 17 33 33 H 1.09004 * 109.47313 * 59.15258 * 19 18 17 34 34 H 1.09001 * 109.47318 * 179.15931 * 19 18 17 35 35 H 1.08997 * 109.89184 * 239.60236 * 20 18 17 36 36 H 1.09005 * 110.02270 * 118.49681 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3214 -1.1201 4.0080 9 1 3.6296 -0.5456 4.4125 10 1 1.3431 -0.9490 5.1121 11 1 2.4859 -2.5659 3.7122 12 7 2.0198 -0.6925 -1.1994 13 6 2.0826 0.2226 -2.3468 14 6 2.5953 -0.5333 -3.5744 15 1 1.9646 -1.3969 -3.7846 16 6 2.6723 0.4079 -4.8053 17 6 3.7748 -0.2749 -5.6527 18 7 4.7527 -0.7785 -4.6648 19 6 5.3642 -2.0335 -5.1219 20 6 4.0631 -0.9657 -3.3751 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 0.7088 1.1615 3.4844 25 1 1.4497 -1.4979 -1.4099 26 1 2.7589 1.0462 -2.1182 27 1 1.0872 0.6162 -2.5525 28 1 1.7237 0.4275 -5.3417 29 1 2.9731 1.4131 -4.5101 30 1 4.2456 0.4494 -6.3174 31 1 3.3567 -1.1010 -6.2278 32 1 4.5900 -2.7907 -5.2462 33 1 5.8660 -1.8671 -6.0751 34 1 6.0901 -2.3740 -4.3836 35 1 4.5318 -0.3461 -2.6106 36 1 4.1039 -2.0139 -3.0787 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871525.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:24 Heat of formation + Delta-G solvation = -23.270417 kcal Electronic energy + Delta-G solvation = -14417.370382 eV Core-core repulsion = 12128.048375 eV Total energy + Delta-G solvation = -2289.322007 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.08986 -37.68093 -34.86643 -33.14412 -30.84506 -29.03762 -27.27848 -26.85287 -24.47024 -22.27810 -21.75153 -21.14022 -18.35741 -17.13020 -16.80303 -16.31145 -15.90301 -15.28408 -15.01104 -14.74428 -14.24414 -14.04336 -13.62941 -13.45671 -12.96302 -12.91885 -12.71067 -12.56901 -12.45430 -12.20148 -12.18606 -12.10380 -11.68741 -11.58114 -11.52332 -10.98729 -10.48298 -9.23974 -8.93456 -8.09184 -6.20366 1.43344 1.43936 1.54725 2.44510 3.14699 3.19099 3.48214 3.75432 3.90913 4.06731 4.41419 4.49979 4.52073 4.56417 4.60069 4.69408 4.76371 4.78897 4.88745 4.92694 5.00271 5.04520 5.11671 5.15701 5.22193 5.43093 5.44755 5.69683 5.81906 6.03910 6.19180 6.28009 6.65741 6.84495 6.95583 7.49754 8.96455 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045902 B = 0.006408 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.854508 B = 4368.480868 C = 4813.546063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H -0.001 1.001 4 C -0.514 4.514 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.961 3.039 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.269 1.269 12 N -0.685 5.685 13 C 0.077 3.923 14 C -0.097 4.097 15 H 0.077 0.923 16 C -0.120 4.120 17 C 0.044 3.956 18 N -0.555 5.555 19 C 0.021 3.979 20 C 0.064 3.936 21 H 0.061 0.939 22 H 0.024 0.976 23 H 0.032 0.968 24 H 0.261 0.739 25 H 0.330 0.670 26 H 0.050 0.950 27 H 0.021 0.979 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.029 0.971 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.338 -3.568 -15.093 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.106 3.894 3 H 0.017 0.983 4 C -0.553 4.553 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.314 5.314 13 C -0.053 4.053 14 C -0.117 4.117 15 H 0.095 0.905 16 C -0.159 4.159 17 C -0.083 4.083 18 N -0.280 5.280 19 C -0.127 4.127 20 C -0.064 4.064 21 H 0.079 0.921 22 H 0.043 0.957 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.147 0.853 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.356 -3.027 -14.739 15.664 hybrid contribution -1.400 -0.644 0.891 1.780 sum 2.957 -3.671 -13.848 14.628 Atomic orbital electron populations 1.22228 0.99985 0.99252 1.00013 1.18931 0.90042 0.92611 0.87792 0.98349 1.21464 1.30299 1.12439 0.91085 0.92731 1.25734 0.95483 0.95914 1.01946 1.70014 1.38106 1.24335 1.23962 0.85510 0.77903 0.79058 0.78845 1.20426 1.20852 1.19317 1.60661 1.57697 1.09551 1.03533 1.21846 0.98073 0.95183 0.90212 1.22309 0.96498 0.98496 0.94406 0.90484 1.22738 0.99445 0.98775 0.94906 1.23084 0.91726 0.99108 0.94392 1.63594 1.31981 1.29231 1.03177 1.22553 0.98976 0.89630 1.01556 1.22591 0.92465 0.99950 0.91379 0.92057 0.95662 0.94840 0.93026 0.85295 0.93161 0.96124 0.89201 0.91117 0.89317 0.92580 0.95269 0.90108 0.91717 0.92505 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.56 8.94 71.98 0.64 -6.91 16 2 C 0.21 11.07 2.57 44.17 0.11 11.18 16 3 H 0.00 -0.08 7.80 -2.39 -0.02 -0.10 16 4 C -0.51 -29.05 8.84 25.60 0.23 -28.82 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.40 5.30 84.66 0.45 0.85 16 7 N -0.92 -54.04 11.32 21.45 0.24 -53.80 16 8 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 N -0.68 -29.03 6.04 -495.44 -2.99 -32.02 16 13 C 0.08 2.73 4.80 86.31 0.41 3.15 16 14 C -0.10 -2.73 3.13 -9.61 -0.03 -2.76 16 15 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 16 C -0.12 -2.72 6.52 31.98 0.21 -2.51 16 17 C 0.04 0.92 6.73 86.77 0.58 1.50 16 18 N -0.56 -14.19 5.44 -911.70 -4.96 -19.16 16 19 C 0.02 0.44 9.12 127.69 1.16 1.60 16 20 C 0.06 1.91 6.31 86.65 0.55 2.46 16 21 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 22 H 0.02 1.08 7.45 -2.39 -0.02 1.06 16 23 H 0.03 1.54 8.13 -2.39 -0.02 1.52 16 24 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 25 H 0.33 13.11 8.47 -89.69 -0.76 12.35 16 26 H 0.05 1.94 7.98 -2.39 -0.02 1.93 16 27 H 0.02 0.73 7.44 -2.39 -0.02 0.71 16 28 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.07 1.70 8.05 -2.39 -0.02 1.68 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 1.03 7.78 -2.39 -0.02 1.01 16 32 H 0.03 0.57 8.10 -2.38 -0.02 0.55 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 2.01 7.77 -2.39 -0.02 2.00 16 36 H 0.05 1.51 7.59 -2.38 -0.02 1.49 16 Total: -1.00 -60.69 285.39 -1.10 -61.79 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.27 Total: 16.86 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 4.32 Total: -20.26 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -7.71 Total: -104.98 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -60.69 -1.10 -61.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871525.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.522 kcal (2) G-P(sol) polarization free energy of solvation -60.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds