Wall clock time and date at job start Mon Mar 30 2020 03:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47714 * 2 1 4 4 C 1.50700 * 109.47119 * 239.99561 * 2 1 3 5 5 H 1.08001 * 120.00602 * 240.00637 * 4 2 1 6 6 C 1.37880 * 119.99865 * 60.00174 * 4 2 1 7 7 N 1.31511 * 120.00047 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00274 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47253 * 89.99678 * 8 6 4 10 10 H 1.48496 * 109.47564 * 209.99843 * 8 6 4 11 11 H 1.48503 * 109.46876 * 329.99994 * 8 6 4 12 12 N 1.46904 * 109.47081 * 120.00238 * 2 1 3 13 13 C 1.46904 * 110.99575 * 274.99267 * 12 2 1 14 14 C 1.52997 * 109.46938 * 180.02562 * 13 12 2 15 15 H 1.08995 * 110.87917 * 57.39318 * 14 13 12 16 16 C 1.55398 * 111.05830 * 181.13458 * 14 13 12 17 17 C 1.54322 * 102.90031 * 153.64836 * 16 14 13 18 18 N 1.47439 * 107.36952 * 337.89642 * 17 16 14 19 19 C 1.46904 * 111.00045 * 236.65966 * 18 17 16 20 20 C 1.47843 * 108.57210 * 358.92676 * 18 17 16 21 21 H 1.08999 * 109.46926 * 59.99675 * 1 2 3 22 22 H 1.08995 * 109.47329 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46778 * 300.00351 * 1 2 3 24 24 H 0.97003 * 120.00388 * 180.02562 * 7 6 4 25 25 H 1.00898 * 111.00257 * 38.94890 * 12 2 1 26 26 H 1.09006 * 109.46736 * 60.00275 * 13 12 2 27 27 H 1.08998 * 109.47467 * 300.00533 * 13 12 2 28 28 H 1.09005 * 110.67856 * 35.34714 * 16 14 13 29 29 H 1.08997 * 110.84583 * 272.03038 * 16 14 13 30 30 H 1.09002 * 109.89036 * 218.40745 * 17 16 14 31 31 H 1.09003 * 109.88743 * 97.38054 * 17 16 14 32 32 H 1.08995 * 109.47213 * 59.87659 * 19 18 17 33 33 H 1.09001 * 109.47132 * 179.87881 * 19 18 17 34 34 H 1.09004 * 109.46667 * 299.87440 * 19 18 17 35 35 H 1.08996 * 110.37823 * 142.92442 * 20 18 17 36 36 H 1.09001 * 110.37314 * 265.15716 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3212 -1.1205 -4.0079 9 1 1.3426 -2.1619 -4.4118 10 1 2.4865 -0.1417 -5.1123 11 1 3.6292 -1.7585 -3.7121 12 7 2.0197 -0.6926 1.1994 13 6 2.0826 0.2226 2.3469 14 6 2.5963 -0.5328 3.5741 15 1 3.5726 -0.9756 3.3771 16 6 2.6506 0.3957 4.8190 17 6 2.5036 -0.5942 5.9938 18 7 1.8603 -1.8113 5.4659 19 6 0.6281 -2.1182 6.2046 20 6 1.5799 -1.6100 4.0284 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.7081 1.1607 -3.4845 25 1 1.4495 -1.4979 1.4101 26 1 1.0871 0.6164 2.5525 27 1 2.7589 1.0462 2.1181 28 1 1.8228 1.1048 4.8067 29 1 3.6060 0.9177 4.8722 30 1 1.8817 -0.1545 6.7736 31 1 3.4861 -0.8393 6.3973 32 1 -0.0680 -1.2847 6.1122 33 1 0.1729 -3.0192 5.7935 34 1 0.8655 -2.2786 7.2564 35 1 1.7379 -2.5371 3.4774 36 1 0.5592 -1.2547 3.8870 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:27 Heat of formation + Delta-G solvation = -3.804345 kcal Electronic energy + Delta-G solvation = -14432.259118 eV Core-core repulsion = 12143.781223 eV Total energy + Delta-G solvation = -2288.477894 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.03710 -35.94717 -33.15380 -31.62032 -29.47860 -27.63137 -25.87961 -25.10111 -23.22011 -20.93550 -20.02509 -19.87539 -16.46142 -16.07874 -15.31632 -14.67070 -14.50412 -13.95109 -13.42486 -13.23622 -13.15658 -12.76206 -12.20718 -11.83560 -11.70087 -11.56153 -11.19435 -11.15362 -10.84750 -10.77490 -10.48405 -10.44335 -10.23808 -10.11797 -9.75397 -8.96672 -8.34076 -8.31524 -7.19715 -5.95910 -3.99046 3.34680 3.40862 3.45985 4.05105 4.46180 4.72671 4.78970 4.96408 5.28281 5.34896 5.35747 5.39486 5.53924 5.65264 5.77660 5.78223 5.84026 5.94346 5.98888 6.16890 6.23518 6.43552 6.61794 6.70438 6.85177 6.96438 7.08007 7.11965 7.39951 7.75534 7.91643 8.30433 8.57457 8.65424 9.08496 9.66345 11.11205 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.058138 B = 0.005878 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.497443 B = 4762.433851 C = 4783.475855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.032 0.968 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.683 5.683 13 C 0.071 3.929 14 C -0.092 4.092 15 H 0.090 0.910 16 C -0.139 4.139 17 C 0.042 3.958 18 N -0.537 5.537 19 C 0.021 3.979 20 C 0.045 3.955 21 H 0.089 0.911 22 H 0.027 0.973 23 H 0.003 0.997 24 H 0.259 0.741 25 H 0.324 0.676 26 H 0.016 0.984 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 -1.928 14.516 14.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.102 3.898 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.313 5.313 13 C -0.059 4.059 14 C -0.111 4.111 15 H 0.108 0.892 16 C -0.178 4.178 17 C -0.086 4.086 18 N -0.261 5.261 19 C -0.128 4.128 20 C -0.082 4.082 21 H 0.107 0.893 22 H 0.046 0.954 23 H 0.022 0.978 24 H 0.069 0.931 25 H 0.140 0.860 26 H 0.034 0.966 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.984 -2.157 14.276 14.472 hybrid contribution -1.385 0.424 -0.719 1.617 sum -0.400 -1.732 13.557 13.673 Atomic orbital electron populations 1.22428 1.00827 0.99120 1.00385 1.19176 0.89515 0.94420 0.86650 0.94962 1.21180 1.30091 1.12372 0.89619 0.91917 1.24960 0.95384 0.95207 0.99065 1.69885 1.37449 1.23277 1.23288 0.86502 0.79259 0.79219 0.82439 1.20861 1.21408 1.19848 1.60806 1.58001 1.09052 1.03435 1.21832 0.98035 0.95755 0.90303 1.22409 0.99983 0.94965 0.93740 0.89155 1.22865 1.02281 0.97834 0.94773 1.22812 0.99800 0.89272 0.96696 1.63582 1.24228 1.34926 1.03330 1.22521 0.91090 1.00450 0.98750 1.23132 0.97736 0.99728 0.87618 0.89276 0.95389 0.97790 0.93119 0.85950 0.96615 0.91580 0.91674 0.90677 0.93169 0.90683 0.95708 0.91442 0.91713 0.89787 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.94 37.16 0.33 -3.77 16 2 C 0.21 5.35 2.57 -68.86 -0.18 5.18 16 3 H 0.03 0.90 7.80 -51.93 -0.40 0.50 16 4 C -0.49 -13.85 8.84 -34.44 -0.30 -14.15 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.99 11.32 55.43 0.63 -25.36 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.68 -14.63 6.23 -107.95 -0.67 -15.30 16 13 C 0.07 1.28 5.00 -3.82 -0.02 1.26 16 14 C -0.09 -1.36 3.28 -88.34 -0.29 -1.65 16 15 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 16 C -0.14 -1.71 6.44 -24.77 -0.16 -1.87 16 17 C 0.04 0.49 6.89 -2.84 -0.02 0.47 16 18 N -0.54 -6.98 5.44 -239.51 -1.30 -8.28 16 19 C 0.02 0.22 9.11 60.07 0.55 0.77 16 20 C 0.05 0.64 5.43 -2.29 -0.01 0.63 16 21 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 22 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 23 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.32 6.60 7.63 -39.29 -0.30 6.30 16 26 H 0.02 0.29 7.40 -51.93 -0.38 -0.10 16 27 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 28 H 0.06 0.80 8.04 -51.93 -0.42 0.38 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.52 7.58 -51.93 -0.39 0.13 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.02 0.26 8.11 -51.93 -0.42 -0.16 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 36 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 LS Contribution 284.46 15.07 4.29 4.29 Total: -1.00 -28.71 284.46 -8.62 -37.33 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.34 Total: 2.37 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -0.20 Total: -11.71 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -1.35 Total: -48.95 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.71 -8.62 -37.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.528 kcal (2) G-P(sol) polarization free energy of solvation -28.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds