Wall clock time and date at job start Mon Mar 30 2020 03:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47714 * 2 1 4 4 C 1.50700 * 109.47119 * 239.99561 * 2 1 3 5 5 H 1.08001 * 120.00602 * 240.00637 * 4 2 1 6 6 C 1.37880 * 119.99865 * 60.00174 * 4 2 1 7 7 N 1.31511 * 120.00047 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00274 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47253 * 89.99678 * 8 6 4 10 10 H 1.48496 * 109.47564 * 209.99843 * 8 6 4 11 11 H 1.48503 * 109.46876 * 329.99994 * 8 6 4 12 12 N 1.46904 * 109.47081 * 120.00238 * 2 1 3 13 13 C 1.46904 * 110.99575 * 274.99267 * 12 2 1 14 14 C 1.52997 * 109.46938 * 180.02562 * 13 12 2 15 15 H 1.08995 * 110.87917 * 57.39318 * 14 13 12 16 16 C 1.55398 * 111.05830 * 181.13458 * 14 13 12 17 17 C 1.54322 * 102.90031 * 153.64836 * 16 14 13 18 18 N 1.47439 * 107.36952 * 337.89642 * 17 16 14 19 19 C 1.46904 * 111.00045 * 236.65966 * 18 17 16 20 20 C 1.47843 * 108.57210 * 358.92676 * 18 17 16 21 21 H 1.08999 * 109.46926 * 59.99675 * 1 2 3 22 22 H 1.08995 * 109.47329 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46778 * 300.00351 * 1 2 3 24 24 H 0.97003 * 120.00388 * 180.02562 * 7 6 4 25 25 H 1.00898 * 111.00257 * 38.94890 * 12 2 1 26 26 H 1.09006 * 109.46736 * 60.00275 * 13 12 2 27 27 H 1.08998 * 109.47467 * 300.00533 * 13 12 2 28 28 H 1.09005 * 110.67856 * 35.34714 * 16 14 13 29 29 H 1.08997 * 110.84583 * 272.03038 * 16 14 13 30 30 H 1.09002 * 109.89036 * 218.40745 * 17 16 14 31 31 H 1.09003 * 109.88743 * 97.38054 * 17 16 14 32 32 H 1.08995 * 109.47213 * 59.87659 * 19 18 17 33 33 H 1.09001 * 109.47132 * 179.87881 * 19 18 17 34 34 H 1.09004 * 109.46667 * 299.87440 * 19 18 17 35 35 H 1.08996 * 110.37823 * 142.92442 * 20 18 17 36 36 H 1.09001 * 110.37314 * 265.15716 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3212 -1.1205 -4.0079 9 1 1.3426 -2.1619 -4.4118 10 1 2.4865 -0.1417 -5.1123 11 1 3.6292 -1.7585 -3.7121 12 7 2.0197 -0.6926 1.1994 13 6 2.0826 0.2226 2.3469 14 6 2.5963 -0.5328 3.5741 15 1 3.5726 -0.9756 3.3771 16 6 2.6506 0.3957 4.8190 17 6 2.5036 -0.5942 5.9938 18 7 1.8603 -1.8113 5.4659 19 6 0.6281 -2.1182 6.2046 20 6 1.5799 -1.6100 4.0284 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.7081 1.1607 -3.4845 25 1 1.4495 -1.4979 1.4101 26 1 1.0871 0.6164 2.5525 27 1 2.7589 1.0462 2.1181 28 1 1.8228 1.1048 4.8067 29 1 3.6060 0.9177 4.8722 30 1 1.8817 -0.1545 6.7736 31 1 3.4861 -0.8393 6.3973 32 1 -0.0680 -1.2847 6.1122 33 1 0.1729 -3.0192 5.7935 34 1 0.8655 -2.2786 7.2564 35 1 1.7379 -2.5371 3.4774 36 1 0.5592 -1.2547 3.8870 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:26 Heat of formation + Delta-G solvation = -23.876842 kcal Electronic energy + Delta-G solvation = -14433.129526 eV Core-core repulsion = 12143.781223 eV Total energy + Delta-G solvation = -2289.348303 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.13806 -37.68500 -34.87802 -33.14823 -30.85421 -29.07331 -27.28541 -26.96880 -24.55741 -22.35377 -21.52601 -21.16321 -18.40120 -17.31350 -16.82670 -16.37390 -15.80564 -15.24355 -15.04611 -14.64134 -14.33477 -14.08596 -13.66264 -13.56537 -13.17158 -12.89664 -12.76032 -12.63925 -12.48209 -12.19613 -12.17098 -12.05452 -11.69272 -11.56487 -11.48165 -11.00423 -10.48751 -9.29295 -8.96989 -8.09523 -6.20921 1.43912 1.44446 1.55919 2.44849 3.06310 3.18760 3.52514 3.71944 3.80529 4.11983 4.31799 4.45067 4.49281 4.53225 4.58522 4.68591 4.74547 4.76902 4.86710 4.89829 4.94496 4.98427 5.05726 5.12638 5.21571 5.36049 5.46390 5.68721 5.81237 5.97218 6.13872 6.27059 6.64688 6.83213 6.94571 7.49315 8.96135 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.058138 B = 0.005878 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.497443 B = 4762.433851 C = 4783.475855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.000 1.000 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.687 5.687 13 C 0.076 3.924 14 C -0.087 4.087 15 H 0.081 0.919 16 C -0.132 4.132 17 C 0.043 3.957 18 N -0.548 5.548 19 C 0.019 3.981 20 C 0.050 3.950 21 H 0.062 0.938 22 H 0.032 0.968 23 H 0.022 0.978 24 H 0.261 0.739 25 H 0.331 0.669 26 H 0.016 0.984 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.026 0.974 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.217 -2.511 15.536 15.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.105 3.895 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.317 5.317 13 C -0.054 4.054 14 C -0.106 4.106 15 H 0.099 0.901 16 C -0.171 4.171 17 C -0.084 4.084 18 N -0.273 5.273 19 C -0.129 4.129 20 C -0.078 4.078 21 H 0.081 0.919 22 H 0.051 0.949 23 H 0.041 0.959 24 H 0.070 0.930 25 H 0.148 0.852 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.138 -2.745 15.322 15.608 hybrid contribution -1.431 0.624 -0.983 1.845 sum -0.294 -2.121 14.339 14.498 Atomic orbital electron populations 1.22230 1.00048 0.99207 0.99962 1.18950 0.90016 0.92704 0.87797 0.98162 1.21469 1.30439 1.12464 0.91083 0.92707 1.25739 0.95458 0.95867 1.01960 1.70010 1.38098 1.24317 1.24002 0.85490 0.78800 0.78194 0.78716 1.20044 1.20949 1.19521 1.60672 1.57805 1.09624 1.03552 1.21826 0.97912 0.95304 0.90332 1.22273 0.99438 0.95583 0.93349 0.90089 1.22846 1.03094 0.97637 0.93549 1.22866 1.00512 0.88510 0.96553 1.63578 1.25377 1.35712 1.02599 1.22587 0.90317 1.00543 0.99448 1.23006 0.97114 0.98880 0.88761 0.91935 0.94908 0.95856 0.92997 0.85181 0.96623 0.92647 0.91527 0.89453 0.91506 0.89851 0.95554 0.91322 0.89989 0.90729 0.94274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.58 8.94 71.98 0.64 -6.94 16 2 C 0.21 11.06 2.57 44.17 0.11 11.17 16 3 H 0.00 0.02 7.80 -2.39 -0.02 0.01 16 4 C -0.52 -29.20 8.84 25.60 0.23 -28.97 16 5 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.43 5.30 84.66 0.45 0.88 16 7 N -0.92 -53.89 11.32 21.45 0.24 -53.65 16 8 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 N -0.69 -29.48 6.23 -495.43 -3.09 -32.56 16 13 C 0.08 2.72 5.00 86.30 0.43 3.15 16 14 C -0.09 -2.49 3.28 -9.32 -0.03 -2.52 16 15 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 16 C -0.13 -3.00 6.44 31.87 0.21 -2.79 16 17 C 0.04 0.88 6.89 86.65 0.60 1.48 16 18 N -0.55 -13.11 5.44 -911.68 -4.96 -18.07 16 19 C 0.02 0.37 9.11 127.69 1.16 1.54 16 20 C 0.05 1.37 5.43 86.78 0.47 1.84 16 21 H 0.06 3.41 6.07 -2.39 -0.01 3.39 16 22 H 0.03 1.52 8.13 -2.39 -0.02 1.50 16 23 H 0.02 1.00 7.45 -2.38 -0.02 0.98 16 24 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 25 H 0.33 13.39 7.63 -89.70 -0.68 12.71 16 26 H 0.02 0.56 7.40 -2.38 -0.02 0.54 16 27 H 0.06 2.08 8.05 -2.39 -0.02 2.06 16 28 H 0.07 1.50 8.04 -2.38 -0.02 1.48 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 1.17 7.58 -2.39 -0.02 1.15 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.03 0.50 8.11 -2.39 -0.02 0.48 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.07 2.15 8.05 -2.39 -0.02 2.13 16 36 H 0.04 1.09 7.65 -2.39 -0.02 1.07 16 Total: -1.00 -60.44 284.46 -1.17 -61.60 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.34 Total: 17.37 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 4.27 Total: -21.16 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -7.81 Total: -104.29 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -60.44 -1.17 -61.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.728 kcal (2) G-P(sol) polarization free energy of solvation -60.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds