Wall clock time and date at job start Mon Mar 30 2020 03:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46948 * 2 1 4 4 C 1.53001 * 109.47100 * 119.99305 * 2 1 3 5 5 N 1.46902 * 109.47237 * 175.00030 * 4 2 1 6 6 C 1.48536 * 110.99558 * 52.60826 * 5 4 2 7 7 C 1.54942 * 103.22174 * 159.72037 * 6 5 4 8 8 C 1.54591 * 102.92071 * 322.58129 * 7 6 5 9 9 C 1.47902 * 110.99595 * 170.00239 * 5 4 2 10 10 N 1.46898 * 109.47420 * 239.99390 * 2 1 3 11 11 C 1.46906 * 110.99888 * 85.00182 * 10 2 1 12 12 C 1.50699 * 109.47140 * 179.97438 * 11 10 2 13 13 H 1.08003 * 119.99962 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99861 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99892 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 120.00241 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47135 * 90.00125 * 16 14 12 18 18 H 1.48503 * 109.47215 * 210.00315 * 16 14 12 19 19 H 1.48508 * 109.46958 * 330.00276 * 16 14 12 20 20 H 1.09002 * 109.46948 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47372 * 300.00433 * 1 2 3 22 22 H 1.09000 * 109.47137 * 60.01031 * 1 2 3 23 23 H 1.09005 * 109.47411 * 295.00505 * 4 2 1 24 24 H 1.09011 * 109.46897 * 55.00288 * 4 2 1 25 25 H 1.09002 * 110.66450 * 278.14958 * 6 5 4 26 26 H 1.08995 * 110.66641 * 41.28356 * 6 5 4 27 27 H 1.08996 * 110.71821 * 204.22641 * 7 6 5 28 28 H 1.08998 * 110.72666 * 80.94288 * 7 6 5 29 29 H 1.09001 * 110.31340 * 263.03936 * 8 7 6 30 30 H 1.09007 * 110.30829 * 140.87707 * 8 7 6 31 31 H 1.09004 * 109.92182 * 333.50819 * 9 5 4 32 32 H 1.08997 * 109.91834 * 94.61187 * 9 5 4 33 33 H 1.00901 * 111.00121 * 321.04769 * 10 2 1 34 34 H 1.09004 * 109.47040 * 299.99934 * 11 10 2 35 35 H 1.09000 * 109.47033 * 59.99886 * 11 10 2 36 36 H 0.97002 * 119.99998 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5040 -0.8265 1.1906 6 6 4.1240 0.5015 0.9489 7 6 5.5822 0.3055 1.4347 8 6 5.4148 -0.6058 2.6722 9 6 4.0535 -1.2995 2.4797 10 7 2.0197 -0.6926 -1.1993 11 6 2.0826 0.2224 -2.3469 12 6 2.5887 -0.5217 -3.5556 13 1 2.8391 -1.5696 -3.4789 14 6 2.7331 0.1353 -4.7591 15 7 3.1743 -0.5143 -5.8141 16 14 2.3007 1.9478 -4.8916 17 1 3.5007 2.7667 -4.5841 18 1 1.8375 2.2467 -6.2705 19 1 1.2202 2.2708 -3.9254 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 1.7516 -0.1581 2.1371 24 1 1.6053 -1.7198 1.2953 25 1 4.1020 0.7489 -0.1124 26 1 3.6234 1.2720 1.5351 27 1 6.0265 1.2602 1.7160 28 1 6.1805 -0.1891 0.6695 29 1 5.4095 -0.0086 3.5840 30 1 6.2146 -1.3455 2.7083 31 1 3.3800 -1.0278 3.2926 32 1 4.1852 -2.3812 2.4527 33 1 1.4496 -1.4981 -1.4099 34 1 1.0871 0.6161 -2.5526 35 1 2.7589 1.0461 -2.1182 36 1 3.2763 -0.0519 -6.6607 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042371684.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:42 Heat of formation + Delta-G solvation = -21.769275 kcal Electronic energy + Delta-G solvation = -14654.234332 eV Core-core repulsion = 12364.977420 eV Total energy + Delta-G solvation = -2289.256912 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.00559 -37.65747 -34.92983 -33.06720 -31.18265 -29.68095 -28.20334 -26.29871 -23.30947 -22.75496 -21.57678 -20.84384 -18.85833 -17.16365 -16.87704 -16.45825 -15.99802 -15.35347 -15.04775 -14.65552 -14.62244 -14.06186 -13.71935 -13.58074 -13.27694 -12.96281 -12.73681 -12.55746 -12.31254 -12.19815 -12.05391 -11.93188 -11.72184 -11.55094 -11.38912 -11.31566 -10.79613 -9.06666 -8.89797 -8.28336 -6.31590 1.33345 1.34965 1.45859 2.34122 3.05595 3.16792 3.59355 3.80044 3.89151 4.08432 4.18556 4.27521 4.39764 4.44731 4.60495 4.70197 4.75784 4.78863 4.85628 4.90105 4.99629 4.99804 5.03140 5.15662 5.20343 5.26442 5.32611 5.38813 5.56607 6.02032 6.18382 6.33887 6.65126 6.74097 6.87742 7.33237 8.88825 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032100 B = 0.008166 C = 0.007342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.063171 B = 3428.117437 C = 3812.850350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.077 3.923 3 H 0.061 0.939 4 C 0.069 3.931 5 N -0.519 5.519 6 C 0.040 3.960 7 C -0.124 4.124 8 C -0.122 4.122 9 C 0.031 3.969 10 N -0.665 5.665 11 C 0.182 3.818 12 C -0.522 4.522 13 H 0.034 0.966 14 C 0.006 3.994 15 N -0.949 5.949 16 Si 0.950 3.050 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.252 1.252 20 H 0.063 0.937 21 H 0.078 0.922 22 H 0.041 0.959 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.332 0.668 34 H -0.018 1.018 35 H 0.016 0.984 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.311 3.979 18.662 19.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.033 4.033 3 H 0.079 0.921 4 C -0.059 4.059 5 N -0.243 5.243 6 C -0.088 4.088 7 C -0.162 4.162 8 C -0.160 4.160 9 C -0.097 4.097 10 N -0.294 5.294 11 C 0.054 3.946 12 C -0.560 4.560 13 H 0.053 0.947 14 C -0.191 4.191 15 N -0.590 5.590 16 Si 0.773 3.227 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.175 1.175 20 H 0.082 0.918 21 H 0.097 0.903 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.150 0.850 34 H 0.000 1.000 35 H 0.034 0.966 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.490 3.703 18.235 18.613 hybrid contribution -1.192 1.067 -0.419 1.653 sum -1.682 4.770 17.816 18.520 Atomic orbital electron populations 1.22400 0.96099 1.02593 1.02156 1.21718 0.93183 0.97213 0.91198 0.92074 1.22233 0.88072 1.00360 0.95265 1.64647 1.05545 1.23869 1.30282 1.23099 0.94950 0.90494 1.00217 1.22472 0.95714 1.00295 0.97735 1.22364 0.96854 0.98817 0.97988 1.22960 0.96035 1.00518 0.90146 1.60359 1.56706 1.09110 1.03251 1.19669 0.93539 0.92581 0.88846 1.21358 1.43091 0.97443 0.94097 0.94728 1.25875 0.94689 1.03380 0.95111 1.70064 1.48387 1.38851 1.01717 0.85677 0.79652 0.79482 0.77850 1.19172 1.20582 1.17549 0.91770 0.90336 0.93947 0.93310 0.90887 0.92612 0.93723 0.89768 0.92440 0.89961 0.90602 0.93109 0.90963 0.85049 1.00043 0.96639 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.69 9.16 71.98 0.66 -4.03 16 2 C 0.08 2.50 2.08 44.92 0.09 2.59 16 3 H 0.06 2.06 6.74 -2.39 -0.02 2.04 16 4 C 0.07 1.92 4.72 86.30 0.41 2.33 16 5 N -0.52 -15.81 5.12 -882.96 -4.52 -20.33 16 6 C 0.04 1.20 5.14 86.65 0.44 1.65 16 7 C -0.12 -3.10 7.06 31.80 0.22 -2.88 16 8 C -0.12 -2.50 6.93 31.47 0.22 -2.29 16 9 C 0.03 0.73 6.70 86.45 0.58 1.31 16 10 N -0.66 -27.85 5.96 -495.56 -2.95 -30.81 16 11 C 0.18 8.96 4.31 85.56 0.37 9.33 16 12 C -0.52 -31.25 9.87 25.60 0.25 -30.99 16 13 H 0.03 2.31 8.06 -2.91 -0.02 2.29 16 14 C 0.01 0.39 5.47 84.65 0.46 0.85 16 15 N -0.95 -60.84 13.96 21.45 0.30 -60.55 16 16 Si 0.95 45.21 27.47 68.60 1.88 47.10 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 20 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 21 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.04 1.28 7.45 -2.39 -0.02 1.26 16 23 H 0.05 1.13 7.81 -2.38 -0.02 1.11 16 24 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 25 H 0.06 2.08 7.76 -2.39 -0.02 2.06 16 26 H 0.04 1.19 8.00 -2.39 -0.02 1.17 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.44 8.14 -2.38 -0.02 1.43 16 31 H 0.05 1.03 7.57 -2.38 -0.02 1.01 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.33 13.95 8.46 -89.69 -0.76 13.19 16 34 H -0.02 -0.87 6.49 -2.38 -0.02 -0.89 16 35 H 0.02 0.77 7.48 -2.39 -0.02 0.75 16 36 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -67.52 283.96 -1.37 -68.89 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.21 Total: 17.82 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: 3.71 Total: -22.13 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -7.18 Total: -111.68 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.10 kcal Total: -67.52 -1.37 -68.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042371684.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.123 kcal (2) G-P(sol) polarization free energy of solvation -67.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds