Wall clock time and date at job start Mon Mar 30 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46811 * 2 1 4 4 C 1.53008 * 109.47065 * 240.00570 * 2 1 3 5 5 N 1.46892 * 109.47250 * 64.69707 * 4 2 1 6 6 C 1.48544 * 110.99949 * 58.91305 * 5 4 2 7 7 C 1.54933 * 103.22752 * 159.71897 * 6 5 4 8 8 C 1.54593 * 102.92252 * 322.58563 * 7 6 5 9 9 C 1.47903 * 110.99994 * 176.30505 * 5 4 2 10 10 N 1.46894 * 109.47204 * 120.00661 * 2 1 3 11 11 C 1.46904 * 110.99662 * 272.22811 * 10 2 1 12 12 C 1.50704 * 109.46991 * 179.97438 * 11 10 2 13 13 H 1.07998 * 120.00017 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99944 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99985 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99752 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47584 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46930 * 120.00643 * 16 14 12 19 19 H 1.48509 * 109.47283 * 239.99994 * 16 14 12 20 20 H 1.09004 * 109.46945 * 59.99450 * 1 2 3 21 21 H 1.08992 * 109.46995 * 299.99819 * 1 2 3 22 22 H 1.08996 * 109.47077 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46927 * 184.69931 * 4 2 1 24 24 H 1.08997 * 109.46548 * 304.69749 * 4 2 1 25 25 H 1.09002 * 110.66539 * 278.15749 * 6 5 4 26 26 H 1.08997 * 110.66293 * 41.28032 * 6 5 4 27 27 H 1.09003 * 110.72383 * 204.22671 * 7 6 5 28 28 H 1.09003 * 110.72510 * 80.94473 * 7 6 5 29 29 H 1.08999 * 110.31376 * 263.04455 * 8 7 6 30 30 H 1.09005 * 110.31137 * 140.87339 * 8 7 6 31 31 H 1.08991 * 109.91616 * 333.51093 * 9 5 4 32 32 H 1.08998 * 109.91235 * 94.60927 * 9 5 4 33 33 H 1.00904 * 111.00536 * 148.27390 * 10 2 1 34 34 H 1.09001 * 109.47009 * 299.99538 * 11 10 2 35 35 H 1.08995 * 109.47329 * 59.99785 * 11 10 2 36 36 H 0.96996 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 1.6452 0.0338 -2.4460 6 6 2.1932 1.4139 -2.4095 7 6 2.1472 1.8530 -3.8947 8 6 2.5192 0.5565 -4.6501 9 6 2.1967 -0.5867 -3.6701 10 7 2.0197 -0.6926 1.1993 11 6 2.1449 0.2371 2.3298 12 6 2.6479 -0.5078 3.5394 13 1 2.8544 -1.5659 3.4747 14 6 2.8456 0.1617 4.7284 15 7 2.5946 1.4502 4.8071 16 14 3.4684 -0.7618 6.2279 17 1 3.6719 -2.1910 5.8799 18 1 4.7572 -0.1726 6.6721 19 1 2.4719 -0.6557 7.3239 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1268 -0.7946 -1.2083 24 1 1.6096 -1.7216 -1.2925 25 1 1.5651 2.0612 -1.7974 26 1 3.2189 1.4109 -2.0408 27 1 2.8803 2.6361 -4.0882 28 1 1.1455 2.1848 -4.1680 29 1 3.5807 0.5542 -4.8978 30 1 1.9186 0.4601 -5.5547 31 1 3.1060 -1.1375 -3.4298 32 1 1.4603 -1.2596 -4.1093 33 1 2.8957 -1.1585 1.0156 34 1 2.8477 1.0295 2.0724 35 1 1.1708 0.6732 2.5512 36 1 2.7333 1.9212 5.6436 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042371685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:45 Heat of formation + Delta-G solvation = -27.238339 kcal Electronic energy + Delta-G solvation = -14323.578337 eV Core-core repulsion = 12034.084269 eV Total energy + Delta-G solvation = -2289.494069 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.14530 -37.66486 -35.03203 -33.09332 -30.84610 -29.72637 -28.17084 -26.54095 -23.84125 -22.54279 -21.66520 -20.85746 -18.56328 -17.13046 -17.06193 -16.56006 -16.33342 -15.52877 -14.98492 -14.83257 -14.42417 -14.06741 -13.64112 -13.35953 -13.16748 -13.01458 -12.78311 -12.63224 -12.37856 -12.27840 -12.14727 -12.03816 -11.88350 -11.55618 -11.40486 -11.20044 -10.68314 -9.42493 -9.15827 -8.24241 -6.35909 1.40301 1.41392 1.55470 2.38863 2.92828 3.09159 3.58065 3.74026 3.81060 4.00769 4.06786 4.23812 4.33511 4.40953 4.61530 4.68171 4.78108 4.80280 4.92552 4.96647 4.98037 5.05823 5.08395 5.16922 5.21228 5.25140 5.31649 5.41993 5.61804 5.92710 5.99772 6.04190 6.43549 6.70909 6.87351 7.35413 8.87904 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.059720 B = 0.005501 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.744669 B = 5088.703793 C = 5144.609414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.084 3.916 3 H 0.019 0.981 4 C 0.061 3.939 5 N -0.519 5.519 6 C 0.026 3.974 7 C -0.118 4.118 8 C -0.125 4.125 9 C 0.030 3.970 10 N -0.683 5.683 11 C 0.213 3.787 12 C -0.536 4.536 13 H 0.065 0.935 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.976 3.024 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.278 1.278 20 H 0.073 0.927 21 H 0.024 0.976 22 H 0.056 0.944 23 H 0.029 0.971 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.332 0.668 34 H -0.044 1.044 35 H -0.001 1.001 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.184 -1.982 -17.500 17.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.026 4.026 3 H 0.037 0.963 4 C -0.068 4.068 5 N -0.244 5.244 6 C -0.102 4.102 7 C -0.156 4.156 8 C -0.163 4.163 9 C -0.097 4.097 10 N -0.315 5.315 11 C 0.085 3.915 12 C -0.575 4.575 13 H 0.084 0.916 14 C -0.198 4.198 15 N -0.575 5.575 16 Si 0.800 3.200 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.203 1.203 20 H 0.092 0.908 21 H 0.043 0.957 22 H 0.076 0.924 23 H 0.047 0.953 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.150 0.850 34 H -0.026 1.026 35 H 0.017 0.983 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.015 -2.072 -17.211 17.365 hybrid contribution 1.911 0.458 0.995 2.202 sum 0.896 -1.614 -16.216 16.321 Atomic orbital electron populations 1.21546 0.93971 1.01648 1.00161 1.21535 0.96975 0.94945 0.89180 0.96269 1.22293 0.97080 0.98163 0.89219 1.64743 1.55501 1.02309 1.01846 1.23291 0.97415 0.90804 0.98684 1.22473 1.02747 0.97820 0.92531 1.22393 1.02089 0.93316 0.98474 1.22969 0.98640 0.97684 0.90422 1.60626 1.34309 1.31618 1.04920 1.19200 0.93571 0.89907 0.88801 1.21588 1.43915 0.96046 0.95911 0.91644 1.25987 0.95574 0.95763 1.02436 1.70103 1.49962 1.09823 1.27658 0.85241 0.77841 0.78873 0.78065 1.18562 1.20221 1.20318 0.90842 0.95682 0.92447 0.95265 0.89552 0.91231 0.94950 0.89936 0.90363 0.90759 0.89444 0.93922 0.89508 0.85019 1.02611 0.98278 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.14 9.34 71.98 0.67 -3.47 16 2 C 0.08 3.15 2.53 44.92 0.11 3.27 16 3 H 0.02 0.80 6.28 -2.39 -0.02 0.78 16 4 C 0.06 1.84 4.23 86.31 0.36 2.21 16 5 N -0.52 -13.58 4.79 -883.01 -4.23 -17.81 16 6 C 0.03 0.66 5.36 86.65 0.46 1.12 16 7 C -0.12 -2.18 7.06 31.80 0.22 -1.95 16 8 C -0.12 -2.02 6.93 31.47 0.22 -1.81 16 9 C 0.03 0.62 6.70 86.45 0.58 1.20 16 10 N -0.68 -30.76 6.31 -495.56 -3.13 -33.88 16 11 C 0.21 11.89 5.24 85.56 0.45 12.34 16 12 C -0.54 -31.42 9.32 25.60 0.24 -31.18 16 13 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 14 C 0.00 0.03 5.46 84.66 0.46 0.49 16 15 N -0.94 -57.65 13.29 21.45 0.28 -57.36 16 16 Si 0.98 44.91 29.54 68.60 2.03 46.94 16 17 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H 0.07 2.33 7.74 -2.38 -0.02 2.31 16 21 H 0.02 0.99 7.64 -2.39 -0.02 0.97 16 22 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.03 0.88 7.87 -2.39 -0.02 0.86 16 24 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.07 1.95 7.55 -2.39 -0.02 1.93 16 26 H 0.03 0.89 8.01 -2.39 -0.02 0.87 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.04 0.87 7.67 -2.39 -0.02 0.85 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.33 14.10 8.24 -89.69 -0.74 13.37 16 34 H -0.04 -2.63 8.05 -2.39 -0.02 -2.65 16 35 H 0.00 -0.05 7.64 -2.39 -0.02 -0.07 16 36 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -64.80 287.21 -0.97 -65.77 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.29 Total: 14.13 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 3.79 Total: -17.78 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -7.07 Total: -109.06 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -64.80 -0.97 -65.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042371685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.528 kcal (2) G-P(sol) polarization free energy of solvation -64.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds