Wall clock time and date at job start Mon Mar 30 2020 03:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47325 * 2 1 4 4 C 1.50703 * 109.47297 * 240.00086 * 2 1 3 5 5 H 1.07997 * 119.99838 * 271.07239 * 4 2 1 6 6 C 1.37876 * 119.99760 * 91.06287 * 4 2 1 7 7 N 1.31505 * 120.00274 * 352.67959 * 6 4 2 8 8 Si 1.86800 * 119.99514 * 172.67577 * 6 4 2 9 9 H 1.48495 * 109.47168 * 90.00629 * 8 6 4 10 10 H 1.48506 * 109.46718 * 210.00288 * 8 6 4 11 11 H 1.48495 * 109.47599 * 330.00031 * 8 6 4 12 12 N 1.46908 * 109.47432 * 120.00033 * 2 1 3 13 13 C 1.46840 * 111.00267 * 170.78742 * 12 2 1 14 14 C 1.53030 * 109.52547 * 185.83952 * 13 12 2 15 15 C 1.53119 * 109.28128 * 300.82527 * 14 13 12 16 16 C 1.52995 * 109.52500 * 177.55687 * 15 14 13 17 17 N 1.46899 * 109.47114 * 65.31648 * 16 15 14 18 18 C 1.53120 * 109.16111 * 57.64758 * 15 14 13 19 19 C 1.46841 * 110.99795 * 295.00281 * 12 2 1 20 20 H 1.09003 * 109.47360 * 186.68776 * 1 2 3 21 21 H 1.09006 * 109.47276 * 306.68388 * 1 2 3 22 22 H 1.08997 * 109.47382 * 66.68392 * 1 2 3 23 23 H 0.97005 * 120.00544 * 354.52679 * 7 6 4 24 24 H 1.08999 * 109.46315 * 305.85885 * 13 12 2 25 25 H 1.09005 * 109.45980 * 65.82511 * 13 12 2 26 26 H 1.09006 * 109.50817 * 180.87959 * 14 13 12 27 27 H 1.09004 * 109.50239 * 60.76465 * 14 13 12 28 28 H 1.09002 * 109.51916 * 297.74505 * 15 14 13 29 29 H 1.08998 * 109.47236 * 185.31311 * 16 15 14 30 30 H 1.09001 * 109.47490 * 305.31293 * 16 15 14 31 31 H 1.00902 * 111.00175 * 180.02562 * 17 16 15 32 32 H 1.00898 * 110.99734 * 303.95200 * 17 16 15 33 33 H 1.08993 * 109.50485 * 182.40565 * 18 15 14 34 34 H 1.09002 * 109.49809 * 62.29028 * 18 15 14 35 35 H 1.09001 * 109.46484 * 294.16937 * 19 12 2 36 36 H 1.08997 * 109.46524 * 54.13992 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1958 -1.7777 -1.2089 6 6 2.2830 0.0023 -2.3838 7 7 1.9495 1.2722 -2.4577 8 14 3.0964 -0.8362 -3.8415 9 1 2.0530 -1.4177 -4.7236 10 1 3.8913 0.1593 -4.6048 11 1 3.9917 -1.9164 -3.3550 12 7 2.0197 -0.6925 1.1995 13 6 3.4709 -0.9051 1.1288 14 6 3.9222 -1.7533 2.3199 15 6 3.5557 -1.0336 3.6208 16 6 3.9496 -1.9045 4.8154 17 7 5.4111 -2.0469 4.8569 18 6 2.0457 -0.7812 3.6473 19 6 1.6488 0.0388 2.4176 20 1 -0.3634 -1.0207 0.1197 21 1 -0.3634 0.6140 0.8242 22 1 -0.3634 0.4067 -0.9437 23 1 1.4565 1.6872 -1.7327 24 1 3.7175 -1.4214 0.2010 25 1 3.9807 0.0580 1.1548 26 1 5.0017 -1.8978 2.2756 27 1 3.4232 -2.7218 2.2868 28 1 4.0851 -0.0822 3.6722 29 1 3.6040 -1.4355 5.7366 30 1 3.4914 -2.8884 4.7146 31 1 5.6967 -2.6188 5.6376 32 1 5.7628 -2.4201 3.9879 33 1 1.7845 -0.2312 4.5513 34 1 1.5172 -1.7344 3.6351 35 1 2.1672 0.9975 2.4377 36 1 0.5721 0.2081 2.4260 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044514524.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:07 Heat of formation + Delta-G solvation = -18.398951 kcal Electronic energy + Delta-G solvation = -14924.675802 eV Core-core repulsion = 12635.565038 eV Total energy + Delta-G solvation = -2289.110764 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.72941 -35.77737 -33.40369 -31.38341 -30.38837 -28.56948 -25.43335 -24.58483 -22.19572 -21.59303 -19.99322 -19.15117 -16.71405 -16.01146 -15.29831 -14.68370 -14.13260 -13.84701 -13.71371 -13.38636 -13.29676 -12.53868 -12.37187 -11.80195 -11.62105 -11.21263 -11.03718 -10.76010 -10.71502 -10.59000 -10.43892 -10.12758 -10.04572 -9.76169 -9.55148 -8.71612 -8.57552 -8.26596 -7.18771 -6.35276 -4.05761 3.43535 3.46528 3.62470 4.51766 4.55981 4.87958 5.05485 5.14705 5.27493 5.40931 5.63117 5.73569 5.78592 5.90960 5.98128 6.11835 6.27508 6.32063 6.37115 6.40131 6.55398 6.62346 6.72115 6.80215 6.85648 6.98468 7.11898 7.17042 7.38633 7.49727 7.94367 8.11439 8.46291 8.62325 8.89009 9.66101 11.01637 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039215 B = 0.008417 C = 0.007283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.839002 B = 3325.631948 C = 3843.757137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.192 3.808 3 H 0.003 0.997 4 C -0.583 4.583 5 H 0.056 0.944 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 1.067 2.933 9 H -0.288 1.288 10 H -0.285 1.285 11 H -0.288 1.288 12 N -0.531 5.531 13 C 0.071 3.929 14 C -0.112 4.112 15 C -0.087 4.087 16 C 0.068 3.932 17 N -0.853 5.853 18 C -0.106 4.106 19 C 0.052 3.948 20 H 0.045 0.955 21 H 0.016 0.984 22 H 0.048 0.952 23 H 0.270 0.730 24 H 0.090 0.910 25 H 0.016 0.984 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.025 0.975 31 H 0.336 0.664 32 H 0.342 0.658 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.018 0.982 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.901 -5.544 11.333 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.086 3.914 3 H 0.021 0.979 4 C -0.622 4.622 5 H 0.074 0.926 6 C -0.185 4.185 7 N -0.549 5.549 8 Si 0.896 3.104 9 H -0.215 1.215 10 H -0.210 1.210 11 H -0.214 1.214 12 N -0.256 5.256 13 C -0.057 4.057 14 C -0.150 4.150 15 C -0.106 4.106 16 C -0.063 4.063 17 N -0.383 5.383 18 C -0.145 4.145 19 C -0.077 4.077 20 H 0.064 0.936 21 H 0.035 0.965 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.108 0.892 25 H 0.034 0.966 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.036 0.964 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.281 -4.927 9.918 11.550 hybrid contribution -0.512 -0.447 1.410 1.565 sum 2.769 -5.374 11.328 12.840 Atomic orbital electron populations 1.21880 0.98613 0.99531 0.98543 1.19437 0.91439 0.92747 0.87826 0.97883 1.21857 1.48077 0.96056 0.96215 0.92567 1.25810 0.96301 0.95711 1.00671 1.70751 1.36849 1.11903 1.35371 0.83578 0.76458 0.75051 0.75338 1.21518 1.21025 1.21416 1.62038 1.12503 1.49092 1.01976 1.21832 0.88340 0.97546 0.98022 1.21699 0.99387 0.99461 0.94422 1.21233 0.96197 0.99119 0.94090 1.21839 0.87602 0.98039 0.98814 1.58771 1.11660 1.59288 1.08580 1.21569 0.95073 1.00623 0.97216 1.22037 1.00079 0.94444 0.91123 0.93634 0.96532 0.93326 0.91941 0.89179 0.96597 0.92515 0.92016 0.91080 0.91565 0.95661 0.85288 0.84491 0.92587 0.91644 0.96376 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.83 37.15 0.33 -2.66 16 2 C 0.19 4.86 1.73 -68.86 -0.12 4.75 16 3 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 4 C -0.58 -16.13 6.76 -34.44 -0.23 -16.36 16 5 H 0.06 1.58 7.48 -52.49 -0.39 1.19 16 6 C 0.02 0.55 5.45 -17.82 -0.10 0.45 16 7 N -0.91 -27.40 13.54 55.43 0.75 -26.65 16 8 Si 1.07 25.08 29.91 -169.99 -5.08 20.00 16 9 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.53 -11.66 4.52 -228.09 -1.03 -12.69 16 13 C 0.07 1.47 5.16 -3.84 -0.02 1.45 16 14 C -0.11 -1.82 5.09 -26.65 -0.14 -1.95 16 15 C -0.09 -1.29 2.46 -90.50 -0.22 -1.52 16 16 C 0.07 0.83 6.25 -3.83 -0.02 0.80 16 17 N -0.85 -9.62 9.62 -10.37 -0.10 -9.72 16 18 C -0.11 -1.63 5.38 -26.65 -0.14 -1.77 16 19 C 0.05 0.98 5.29 -3.84 -0.02 0.96 16 20 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 21 H 0.02 0.34 6.73 -51.93 -0.35 -0.01 16 22 H 0.05 1.20 8.00 -51.93 -0.42 0.78 16 23 H 0.27 8.10 6.67 -40.82 -0.27 7.83 16 24 H 0.09 2.07 6.40 -51.93 -0.33 1.73 16 25 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.83 6.81 -51.93 -0.35 0.48 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.34 3.01 9.08 -39.29 -0.36 2.66 16 32 H 0.34 3.74 7.32 -39.29 -0.29 3.46 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 1.25 6.32 -51.93 -0.33 0.92 16 LS Contribution 276.25 15.07 4.16 4.16 Total: -1.00 -29.52 276.25 -8.03 -37.55 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.04 Total: 3.19 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -0.69 Total: -15.85 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.38 Total: -49.06 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.52 -8.03 -37.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044514524.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.155 kcal (2) G-P(sol) polarization free energy of solvation -29.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds