Wall clock time and date at job start Mon Mar 30 2020 03:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46902 * 109.47466 * 2 1 4 4 C 1.46846 * 110.99617 * 294.20987 * 3 2 1 5 5 C 1.53040 * 109.51964 * 174.15808 * 4 3 2 6 6 C 1.53119 * 109.28089 * 59.17912 * 5 4 3 7 7 C 1.52995 * 109.57448 * 182.40979 * 6 5 4 8 8 N 1.46500 * 109.47071 * 294.71033 * 7 6 5 9 9 C 1.36940 * 120.00088 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99484 * 0.02562 * 9 8 7 11 11 C 1.38814 * 120.00005 * 180.02562 * 9 8 7 12 12 N 1.31618 * 120.00080 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 119.99917 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47388 * 89.99475 * 13 11 9 15 15 H 1.48501 * 109.47399 * 209.99519 * 13 11 9 16 16 H 1.48509 * 109.47242 * 329.99744 * 13 11 9 17 17 C 1.53124 * 109.15841 * 302.34776 * 6 5 4 18 18 C 1.46846 * 111.00204 * 169.99882 * 3 2 1 19 19 H 1.09004 * 109.47372 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47207 * 299.99940 * 1 2 3 21 21 H 1.09002 * 109.46874 * 60.00238 * 1 2 3 22 22 H 1.08997 * 109.47222 * 239.99574 * 2 1 3 23 23 H 1.09007 * 109.47397 * 120.00253 * 2 1 3 24 24 H 1.08996 * 109.46231 * 294.17554 * 4 3 2 25 25 H 1.09004 * 109.46418 * 54.14394 * 4 3 2 26 26 H 1.09004 * 109.50602 * 299.23671 * 5 4 3 27 27 H 1.08998 * 109.50366 * 179.12192 * 5 4 3 28 28 H 1.08999 * 109.51878 * 62.24548 * 6 5 4 29 29 H 1.08999 * 109.47534 * 54.71390 * 7 6 5 30 30 H 1.09002 * 109.47076 * 174.71469 * 7 6 5 31 31 H 0.97004 * 120.00143 * 0.02562 * 8 7 6 32 32 H 0.96992 * 120.00046 * 180.02562 * 12 11 9 33 33 H 1.08999 * 109.49853 * 297.70868 * 17 6 5 34 34 H 1.08994 * 109.53481 * 177.61659 * 17 6 5 35 35 H 1.09001 * 109.45990 * 305.85570 * 18 3 2 36 36 H 1.08999 * 109.46398 * 65.83493 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6651 2.0685 -1.2504 5 6 2.0608 3.5439 -1.1567 6 6 3.5676 3.6482 -0.9057 7 6 3.9609 5.1187 -0.7510 8 7 3.7367 5.8199 -2.0176 9 6 4.0199 7.1558 -2.1201 10 1 4.4088 7.6922 -1.2672 11 6 3.8069 7.8204 -3.3200 12 7 3.3333 7.1665 -4.3595 13 14 4.1939 9.6424 -3.4600 14 1 5.6016 9.8173 -3.8992 15 1 3.2842 10.2668 -4.4539 16 1 4.0035 10.2919 -2.1381 17 6 3.9175 2.8873 0.3762 18 6 3.4680 1.4311 0.2381 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 2.1942 1.6026 -2.0816 25 1 0.5903 1.9904 -1.4148 26 1 1.5214 4.0138 -0.3342 27 1 1.8117 4.0475 -2.0907 28 1 4.1079 3.2131 -1.7464 29 1 3.3544 5.5768 0.0303 30 1 5.0144 5.1864 -0.4798 31 1 3.3876 5.3380 -2.7837 32 1 3.1849 7.6307 -5.1980 33 1 3.4074 3.3469 1.2228 34 1 4.9948 2.9219 0.5381 35 1 3.7027 0.8900 1.1548 36 1 3.9888 0.9684 -0.6002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044518745.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:03 Heat of formation + Delta-G solvation = -2.646058 kcal Electronic energy + Delta-G solvation = -14455.929924 eV Core-core repulsion = 12167.502256 eV Total energy + Delta-G solvation = -2288.427667 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.04136 -35.60171 -33.40463 -31.18292 -30.48598 -29.37443 -25.92244 -23.39947 -23.11490 -21.61615 -20.68238 -19.34706 -17.06821 -15.90134 -15.13597 -14.72817 -14.36592 -14.02874 -13.65577 -13.55838 -13.31110 -12.65918 -12.53098 -12.09982 -11.71453 -11.67387 -11.40295 -11.04002 -10.91272 -10.85730 -10.77337 -10.19674 -10.11496 -9.98087 -9.73544 -9.52278 -8.80839 -8.22222 -6.84464 -5.71192 -2.98788 3.47113 3.52024 3.53927 3.97708 4.64229 4.90558 5.08222 5.09280 5.22937 5.28965 5.42988 5.50910 5.61872 5.63751 5.66858 5.75217 5.84427 5.88900 6.00252 6.06566 6.13995 6.22487 6.28024 6.37173 6.49170 6.62706 6.76792 6.89795 7.03756 7.22620 7.24529 7.75456 8.48485 9.59253 10.19078 10.53843 11.52109 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061890 B = 0.005893 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.310631 B = 4750.643778 C = 5032.011385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.054 3.946 5 C -0.106 4.106 6 C -0.095 4.095 7 C 0.158 3.842 8 N -0.732 5.732 9 C -0.236 4.236 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.936 5.936 13 Si 0.906 3.094 14 H -0.291 1.291 15 H -0.292 1.292 16 H -0.282 1.282 17 C -0.108 4.108 18 C 0.059 3.941 19 H 0.055 0.945 20 H 0.062 0.938 21 H 0.056 0.944 22 H 0.029 0.971 23 H 0.070 0.930 24 H 0.029 0.971 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.019 0.981 30 H 0.016 0.984 31 H 0.383 0.617 32 H 0.254 0.746 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.888 -13.907 8.576 16.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.265 5.265 4 C -0.074 4.074 5 C -0.143 4.143 6 C -0.114 4.114 7 C 0.031 3.969 8 N -0.377 5.377 9 C -0.368 4.368 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.585 5.585 13 Si 0.738 3.262 14 H -0.218 1.218 15 H -0.218 1.218 16 H -0.208 1.208 17 C -0.146 4.146 18 C -0.069 4.069 19 H 0.074 0.926 20 H 0.081 0.919 21 H 0.075 0.925 22 H 0.047 0.953 23 H 0.088 0.912 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.037 0.963 30 H 0.034 0.966 31 H 0.217 0.783 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.071 -13.488 9.003 16.505 hybrid contribution 0.525 0.419 -1.111 1.298 sum -2.546 -13.069 7.892 15.478 Atomic orbital electron populations 1.21807 0.95045 1.01160 1.02671 1.22038 0.96071 0.89391 1.00272 1.61988 1.13936 1.14740 1.35791 1.22196 1.00420 0.95480 0.89270 1.21575 0.95816 0.93977 1.02980 1.21353 0.96140 0.96821 0.97056 1.20672 0.96926 0.89285 0.90024 1.42392 1.78533 1.07643 1.09084 1.19262 1.35365 0.85758 0.96369 0.91257 1.24723 1.02278 0.98089 0.96056 1.69658 1.51617 1.35283 1.01926 0.86191 0.77563 0.85282 0.77191 1.21805 1.21814 1.20785 1.21574 1.00328 0.94008 0.98736 1.22063 0.87275 0.97693 0.99891 0.92646 0.91873 0.92509 0.95324 0.91187 0.95233 0.90860 0.91455 0.90533 0.91752 0.96309 0.96593 0.78312 0.93602 0.91180 0.91709 0.91294 0.95237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.84 37.15 0.37 -1.09 16 2 C 0.05 0.54 5.68 -3.83 -0.02 0.52 16 3 N -0.54 -7.10 4.66 -234.67 -1.09 -8.20 16 4 C 0.05 0.77 5.29 -3.83 -0.02 0.75 16 5 C -0.11 -1.78 5.23 -26.65 -0.14 -1.92 16 6 C -0.09 -1.63 2.29 -90.50 -0.21 -1.84 16 7 C 0.16 3.35 5.66 -4.04 -0.02 3.32 16 8 N -0.73 -19.16 5.36 -59.91 -0.32 -19.49 16 9 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 10 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 12 N -0.94 -28.84 13.06 55.49 0.72 -28.12 16 13 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 C -0.11 -1.53 5.38 -26.65 -0.14 -1.68 16 18 C 0.06 0.75 5.46 -3.84 -0.02 0.73 16 19 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 20 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.06 0.58 6.43 -51.93 -0.33 0.24 16 22 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 23 H 0.07 0.68 7.99 -51.93 -0.41 0.27 16 24 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.98 6.21 -51.93 -0.32 0.66 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.08 1.45 7.27 -51.93 -0.38 1.07 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.38 10.46 6.89 -40.82 -0.28 10.18 16 32 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.76 8.02 -51.93 -0.42 0.35 16 36 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 282.74 15.07 4.26 4.26 Total: -1.00 -30.54 282.74 -8.25 -38.79 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.34 Total: 3.65 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -0.46 Total: -8.72 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.69 Total: -55.80 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.54 -8.25 -38.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044518745.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.144 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds