Wall clock time and date at job start Mon Mar 30 2020 03:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47185 * 2 1 4 4 C 1.50702 * 109.46843 * 119.99950 * 2 1 3 5 5 H 1.08004 * 119.99707 * 114.16485 * 4 2 1 6 6 C 1.37879 * 119.99984 * 294.16667 * 4 2 1 7 7 N 1.31515 * 119.99658 * 161.60638 * 6 4 2 8 8 Si 1.86797 * 119.99834 * 341.59965 * 6 4 2 9 9 H 1.48502 * 109.47022 * 180.02562 * 8 6 4 10 10 H 1.48508 * 109.46956 * 60.00629 * 8 6 4 11 11 H 1.48495 * 109.47640 * 300.00330 * 8 6 4 12 12 N 1.46897 * 109.46962 * 239.99596 * 2 1 3 13 13 C 1.46844 * 111.00641 * 306.04891 * 12 2 1 14 14 C 1.53030 * 109.52969 * 174.16044 * 13 12 2 15 15 C 1.53116 * 109.27809 * 59.17866 * 14 13 12 16 16 C 1.53121 * 109.16274 * 302.34726 * 15 14 13 17 17 H 1.08996 * 109.50231 * 297.67298 * 16 15 14 18 18 C 1.52997 * 109.50385 * 177.59429 * 16 15 14 19 19 N 1.46895 * 109.47157 * 65.00221 * 18 16 15 20 20 C 1.46850 * 111.00203 * 181.83998 * 12 2 1 21 21 H 1.09003 * 109.46865 * 66.48941 * 1 2 3 22 22 H 1.08997 * 109.47643 * 186.48996 * 1 2 3 23 23 H 1.08997 * 109.47167 * 306.49114 * 1 2 3 24 24 H 0.96992 * 120.00197 * 357.23702 * 7 6 4 25 25 H 1.09006 * 109.46176 * 294.17941 * 13 12 2 26 26 H 1.09005 * 109.45954 * 54.15179 * 13 12 2 27 27 H 1.09000 * 109.50766 * 179.12500 * 14 13 12 28 28 H 1.09010 * 109.50450 * 299.19989 * 14 13 12 29 29 H 1.09000 * 109.52558 * 62.25099 * 15 14 13 30 30 H 1.09004 * 109.52638 * 182.44356 * 15 14 13 31 31 H 1.09007 * 109.47028 * 185.00355 * 18 16 15 32 32 H 1.08996 * 109.47367 * 304.99728 * 18 16 15 33 33 H 1.00900 * 111.00347 * 56.04618 * 19 18 16 34 34 H 1.00903 * 111.00325 * 179.97438 * 19 18 16 35 35 H 1.09010 * 109.45707 * 305.85805 * 20 12 2 36 36 H 1.08997 * 109.46410 * 65.81858 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.5732 -1.6402 1.1342 6 6 1.8011 -0.1734 2.4792 7 7 1.9023 -0.9307 3.5496 8 14 1.3445 1.6298 2.6504 9 1 1.1507 1.9572 4.0859 10 1 0.0861 1.8944 1.9076 11 1 2.4341 2.4714 2.0940 12 7 2.0196 -0.6926 -1.1994 13 6 1.4345 -2.0350 -1.3078 14 6 1.8506 -2.6686 -2.6371 15 6 3.3782 -2.7507 -2.7018 16 6 3.9643 -1.3456 -2.5382 17 1 3.6313 -0.7142 -3.3618 18 6 5.4922 -1.4260 -2.5415 19 7 5.9553 -1.8890 -3.8564 20 6 3.4869 -0.7504 -1.2116 21 1 -0.3633 0.4100 -0.9424 22 1 -0.3634 -1.0210 0.1161 23 1 -0.3633 0.6111 0.8262 24 1 2.1000 -1.8759 3.4581 25 1 1.7898 -2.6537 -0.4836 26 1 0.3477 -1.9620 -1.2648 27 1 1.4288 -3.6711 -2.7104 28 1 1.4831 -2.0581 -3.4621 29 1 3.7428 -3.3930 -1.9002 30 1 3.6805 -3.1615 -3.6651 31 1 5.9084 -0.4396 -2.3364 32 1 5.8210 -2.1258 -1.7733 33 1 5.6090 -1.2921 -4.5926 34 1 6.9621 -1.9501 -3.8844 35 1 3.8909 0.2557 -1.0986 36 1 3.8326 -1.3750 -0.3879 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044531497.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:52 Heat of formation + Delta-G solvation = -12.319756 kcal Electronic energy + Delta-G solvation = -15085.026190 eV Core-core repulsion = 12796.179040 eV Total energy + Delta-G solvation = -2288.847150 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.73411 -35.55681 -33.36697 -31.76429 -30.26208 -28.79885 -25.05994 -24.16020 -23.03200 -21.42955 -19.52763 -19.00414 -17.19950 -15.86400 -15.07213 -14.57444 -14.33991 -13.81775 -13.80290 -13.61545 -12.78613 -12.69152 -12.30304 -11.82972 -11.72472 -11.40898 -11.25481 -10.73436 -10.52590 -10.47828 -10.24906 -9.98441 -9.73721 -9.55301 -9.48458 -8.97210 -8.61763 -8.37307 -7.26677 -6.35008 -4.07938 3.38435 3.42855 3.60440 4.49277 4.57064 4.92619 5.23261 5.25086 5.32917 5.47260 5.67921 5.76978 5.93805 6.03551 6.14199 6.21623 6.33337 6.40719 6.45858 6.55309 6.59232 6.66162 6.77189 6.79201 6.83571 6.96875 7.14677 7.18493 7.28846 7.44532 7.94836 8.19043 8.23743 8.37457 8.92920 9.60886 10.91918 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037855 B = 0.009193 C = 0.008505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.491442 B = 3045.196980 C = 3291.555439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.180 3.820 3 H 0.030 0.970 4 C -0.626 4.626 5 H 0.058 0.942 6 C 0.035 3.965 7 N -0.905 5.905 8 Si 1.042 2.958 9 H -0.287 1.287 10 H -0.272 1.272 11 H -0.284 1.284 12 N -0.530 5.530 13 C 0.060 3.940 14 C -0.118 4.118 15 C -0.101 4.101 16 C -0.082 4.082 17 H 0.068 0.932 18 C 0.066 3.934 19 N -0.849 5.849 20 C 0.072 3.928 21 H 0.030 0.970 22 H 0.045 0.955 23 H 0.053 0.947 24 H 0.266 0.734 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.337 0.663 34 H 0.336 0.664 35 H 0.060 0.940 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.409 -0.015 -12.164 12.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.072 3.928 3 H 0.048 0.952 4 C -0.665 4.665 5 H 0.076 0.924 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.871 3.129 9 H -0.213 1.213 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.254 5.254 13 C -0.069 4.069 14 C -0.156 4.156 15 C -0.138 4.138 16 C -0.102 4.102 17 H 0.086 0.914 18 C -0.065 4.065 19 N -0.378 5.378 20 C -0.057 4.057 21 H 0.049 0.951 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.078 0.922 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.499 0.768 -11.267 11.567 hybrid contribution 1.154 -0.789 -0.310 1.431 sum 3.653 -0.021 -11.577 12.140 Atomic orbital electron populations 1.22261 0.98425 1.00734 0.99104 1.19543 0.91620 0.94299 0.87319 0.95235 1.22506 1.40806 1.10713 0.92434 0.92439 1.25710 0.93811 1.05399 0.92165 1.70849 1.44040 1.07557 1.31380 0.84098 0.77240 0.75726 0.75867 1.21301 1.19872 1.21080 1.62306 1.05633 1.16903 1.40515 1.21929 0.99300 0.90436 0.95195 1.21653 0.95963 0.99416 0.98609 1.21446 0.94925 0.96136 1.01331 1.21215 0.92830 0.97216 0.98899 0.91384 1.21818 0.95830 0.97894 0.90985 1.58721 1.15241 1.58676 1.05142 1.21796 0.89550 0.99772 0.94576 0.95059 0.93546 0.92866 0.92381 0.94761 0.91466 0.92738 0.92108 0.93008 0.91803 0.95648 0.91220 0.85072 0.85238 0.92193 0.94120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.21 37.16 0.30 -3.00 16 2 C 0.18 4.32 2.04 -68.87 -0.14 4.18 16 3 H 0.03 0.73 6.77 -51.93 -0.35 0.38 16 4 C -0.63 -17.28 7.42 -34.44 -0.26 -17.54 16 5 H 0.06 1.73 6.11 -52.48 -0.32 1.41 16 6 C 0.04 1.00 5.34 -17.82 -0.10 0.91 16 7 N -0.90 -27.73 13.70 55.43 0.76 -26.98 16 8 Si 1.04 25.14 26.47 -169.99 -4.50 20.64 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.27 -6.08 5.52 56.52 0.31 -5.77 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.53 -11.28 4.70 -228.08 -1.07 -12.35 16 13 C 0.06 1.20 4.76 -3.84 -0.02 1.18 16 14 C -0.12 -1.94 6.09 -26.66 -0.16 -2.10 16 15 C -0.10 -1.59 5.14 -26.61 -0.14 -1.73 16 16 C -0.08 -1.31 2.49 -90.54 -0.23 -1.53 16 17 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 18 C 0.07 0.90 6.18 -3.83 -0.02 0.88 16 19 N -0.85 -9.67 9.13 -10.37 -0.09 -9.76 16 20 C 0.07 1.43 4.29 -3.83 -0.02 1.42 16 21 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 1.04 6.59 -51.93 -0.34 0.70 16 23 H 0.05 1.21 4.90 -51.93 -0.25 0.96 16 24 H 0.27 8.19 8.72 -40.82 -0.36 7.83 16 25 H 0.03 0.78 6.92 -51.93 -0.36 0.42 16 26 H 0.07 1.34 6.02 -51.93 -0.31 1.03 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.94 7.83 -51.93 -0.41 0.53 16 31 H 0.03 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.34 3.44 8.99 -39.29 -0.35 3.09 16 34 H 0.34 3.16 9.08 -39.29 -0.36 2.80 16 35 H 0.06 1.20 8.12 -51.92 -0.42 0.77 16 36 H 0.04 0.91 6.68 -51.93 -0.35 0.57 16 LS Contribution 269.42 15.07 4.06 4.06 Total: -1.00 -29.41 269.42 -7.64 -37.05 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.03 Total: 4.68 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -0.77 Total: -17.34 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.41 Total: -49.09 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -4.50 Total: 20.64 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.41 -7.64 -37.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044531497.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.734 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds