Wall clock time and date at job start Mon Mar 30 2020 03:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47185 * 2 1 4 4 C 1.50702 * 109.46843 * 119.99950 * 2 1 3 5 5 H 1.08004 * 119.99707 * 114.16485 * 4 2 1 6 6 C 1.37879 * 119.99984 * 294.16667 * 4 2 1 7 7 N 1.31515 * 119.99658 * 161.60638 * 6 4 2 8 8 Si 1.86797 * 119.99834 * 341.59965 * 6 4 2 9 9 H 1.48502 * 109.47022 * 180.02562 * 8 6 4 10 10 H 1.48508 * 109.46956 * 60.00629 * 8 6 4 11 11 H 1.48495 * 109.47640 * 300.00330 * 8 6 4 12 12 N 1.46897 * 109.46962 * 239.99596 * 2 1 3 13 13 C 1.46844 * 111.00641 * 306.04891 * 12 2 1 14 14 C 1.53030 * 109.52969 * 174.16044 * 13 12 2 15 15 C 1.53116 * 109.27809 * 59.17866 * 14 13 12 16 16 C 1.53121 * 109.16274 * 302.34726 * 15 14 13 17 17 H 1.08996 * 109.50231 * 297.67298 * 16 15 14 18 18 C 1.52997 * 109.50385 * 177.59429 * 16 15 14 19 19 N 1.46895 * 109.47157 * 65.00221 * 18 16 15 20 20 C 1.46850 * 111.00203 * 181.83998 * 12 2 1 21 21 H 1.09003 * 109.46865 * 66.48941 * 1 2 3 22 22 H 1.08997 * 109.47643 * 186.48996 * 1 2 3 23 23 H 1.08997 * 109.47167 * 306.49114 * 1 2 3 24 24 H 0.96992 * 120.00197 * 357.23702 * 7 6 4 25 25 H 1.09006 * 109.46176 * 294.17941 * 13 12 2 26 26 H 1.09005 * 109.45954 * 54.15179 * 13 12 2 27 27 H 1.09000 * 109.50766 * 179.12500 * 14 13 12 28 28 H 1.09010 * 109.50450 * 299.19989 * 14 13 12 29 29 H 1.09000 * 109.52558 * 62.25099 * 15 14 13 30 30 H 1.09004 * 109.52638 * 182.44356 * 15 14 13 31 31 H 1.09007 * 109.47028 * 185.00355 * 18 16 15 32 32 H 1.08996 * 109.47367 * 304.99728 * 18 16 15 33 33 H 1.00900 * 111.00347 * 56.04618 * 19 18 16 34 34 H 1.00903 * 111.00325 * 179.97438 * 19 18 16 35 35 H 1.09010 * 109.45707 * 305.85805 * 20 12 2 36 36 H 1.08997 * 109.46410 * 65.81858 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.5732 -1.6402 1.1342 6 6 1.8011 -0.1734 2.4792 7 7 1.9023 -0.9307 3.5496 8 14 1.3445 1.6298 2.6504 9 1 1.1507 1.9572 4.0859 10 1 0.0861 1.8944 1.9076 11 1 2.4341 2.4714 2.0940 12 7 2.0196 -0.6926 -1.1994 13 6 1.4345 -2.0350 -1.3078 14 6 1.8506 -2.6686 -2.6371 15 6 3.3782 -2.7507 -2.7018 16 6 3.9643 -1.3456 -2.5382 17 1 3.6313 -0.7142 -3.3618 18 6 5.4922 -1.4260 -2.5415 19 7 5.9553 -1.8890 -3.8564 20 6 3.4869 -0.7504 -1.2116 21 1 -0.3633 0.4100 -0.9424 22 1 -0.3634 -1.0210 0.1161 23 1 -0.3633 0.6111 0.8262 24 1 2.1000 -1.8759 3.4581 25 1 1.7898 -2.6537 -0.4836 26 1 0.3477 -1.9620 -1.2648 27 1 1.4288 -3.6711 -2.7104 28 1 1.4831 -2.0581 -3.4621 29 1 3.7428 -3.3930 -1.9002 30 1 3.6805 -3.1615 -3.6651 31 1 5.9084 -0.4396 -2.3364 32 1 5.8210 -2.1258 -1.7733 33 1 5.6090 -1.2921 -4.5926 34 1 6.9621 -1.9501 -3.8844 35 1 3.8909 0.2557 -1.0986 36 1 3.8326 -1.3750 -0.3879 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044531497.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:52 Heat of formation + Delta-G solvation = -34.985507 kcal Electronic energy + Delta-G solvation = -15086.009051 eV Core-core repulsion = 12796.179040 eV Total energy + Delta-G solvation = -2289.830011 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.30498 -37.04853 -35.00100 -33.62716 -31.70779 -30.45598 -26.92804 -25.76320 -24.58397 -22.91073 -21.08127 -20.82553 -19.21190 -17.21219 -16.58324 -15.86639 -15.74309 -15.55469 -15.52174 -15.15001 -14.48327 -14.16826 -13.92272 -13.69699 -13.15692 -13.09818 -12.89177 -12.46289 -12.37281 -11.92755 -11.80477 -11.60757 -11.50695 -11.19868 -11.06375 -10.95371 -10.55201 -9.57427 -9.24916 -8.54358 -6.37610 1.44805 1.51394 1.70721 2.48131 3.03948 3.19570 3.68892 3.91056 3.99229 4.11372 4.32470 4.47288 4.51529 4.61173 4.62970 4.72346 4.79792 4.81919 4.90469 4.96196 5.02732 5.07176 5.18904 5.25859 5.27280 5.38835 5.49204 5.54868 5.95302 5.98689 6.18527 6.23340 6.48809 6.65378 6.70760 7.39958 8.60578 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037855 B = 0.009193 C = 0.008505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.491442 B = 3045.196980 C = 3291.555439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.176 3.824 3 H 0.033 0.967 4 C -0.618 4.618 5 H 0.015 0.985 6 C -0.018 4.018 7 N -0.938 5.938 8 Si 1.081 2.919 9 H -0.292 1.292 10 H -0.238 1.238 11 H -0.267 1.267 12 N -0.523 5.523 13 C 0.061 3.939 14 C -0.110 4.110 15 C -0.096 4.096 16 C -0.072 4.072 17 H 0.082 0.918 18 C 0.073 3.927 19 N -0.847 5.847 20 C 0.074 3.926 21 H 0.060 0.940 22 H 0.036 0.964 23 H 0.051 0.949 24 H 0.248 0.752 25 H -0.006 1.006 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.031 0.969 30 H 0.085 0.915 31 H 0.030 0.970 32 H 0.054 0.946 33 H 0.348 0.652 34 H 0.350 0.650 35 H 0.057 0.943 36 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.026 1.340 -14.803 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.067 3.933 3 H 0.050 0.950 4 C -0.656 4.656 5 H 0.033 0.967 6 C -0.216 4.216 7 N -0.574 5.574 8 Si 0.902 3.098 9 H -0.218 1.218 10 H -0.162 1.162 11 H -0.192 1.192 12 N -0.246 5.246 13 C -0.067 4.067 14 C -0.148 4.148 15 C -0.134 4.134 16 C -0.091 4.091 17 H 0.100 0.900 18 C -0.058 4.058 19 N -0.378 5.378 20 C -0.055 4.055 21 H 0.079 0.921 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.012 0.988 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.050 0.950 30 H 0.104 0.896 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.076 0.924 36 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 2.128 2.106 -13.952 14.270 hybrid contribution 1.332 -1.304 0.484 1.926 sum 3.460 0.802 -13.468 13.928 Atomic orbital electron populations 1.22138 0.96674 1.00432 1.00596 1.19544 0.92977 0.94109 0.86637 0.94965 1.22652 1.39499 1.09065 0.94409 0.96671 1.27174 0.93470 1.09056 0.91924 1.70987 1.47108 1.06803 1.32514 0.83637 0.79117 0.70846 0.76183 1.21825 1.16203 1.19209 1.62381 1.06415 1.17356 1.38440 1.21974 0.99217 0.89363 0.96179 1.21615 0.96366 1.00337 0.96446 1.21419 0.94540 0.95752 1.01655 1.21115 0.94343 0.97109 0.96529 0.90001 1.21616 0.94248 0.97901 0.92072 1.58626 1.16476 1.58669 1.04020 1.21829 0.88733 0.99153 0.95815 0.92091 0.94467 0.93071 0.94291 0.98806 0.91311 0.90921 0.90401 0.94978 0.89617 0.95165 0.92721 0.83856 0.83676 0.92437 0.98056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.03 8.21 71.98 0.59 -5.44 16 2 C 0.18 8.33 2.04 44.17 0.09 8.42 16 3 H 0.03 1.54 6.77 -2.39 -0.02 1.52 16 4 C -0.62 -35.16 7.42 25.60 0.19 -34.97 16 5 H 0.02 0.97 6.11 -2.91 -0.02 0.95 16 6 C -0.02 -1.04 5.34 84.65 0.45 -0.59 16 7 N -0.94 -59.71 13.70 21.45 0.29 -59.41 16 8 Si 1.08 49.92 26.47 68.60 1.82 51.74 16 9 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 10 H -0.24 -9.64 5.52 99.48 0.55 -9.09 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 12 N -0.52 -21.90 4.70 -875.51 -4.11 -26.01 16 13 C 0.06 2.43 4.76 86.32 0.41 2.84 16 14 C -0.11 -3.36 6.09 30.64 0.19 -3.18 16 15 C -0.10 -2.87 5.14 30.67 0.16 -2.71 16 16 C -0.07 -2.16 2.49 -10.74 -0.03 -2.19 16 17 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 18 C 0.07 1.90 6.18 86.30 0.53 2.43 16 19 N -0.85 -16.91 9.13 -186.73 -1.70 -18.61 16 20 C 0.07 2.94 4.29 86.32 0.37 3.31 16 21 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 22 H 0.04 1.63 6.59 -2.39 -0.02 1.61 16 23 H 0.05 2.19 4.90 -2.39 -0.01 2.18 16 24 H 0.25 16.19 8.72 -92.71 -0.81 15.38 16 25 H -0.01 -0.31 6.92 -2.38 -0.02 -0.32 16 26 H 0.07 2.69 6.02 -2.38 -0.01 2.67 16 27 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 29 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 2.25 7.83 -2.39 -0.02 2.23 16 31 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.35 5.87 8.99 -89.69 -0.81 5.07 16 34 H 0.35 5.62 9.08 -89.69 -0.81 4.81 16 35 H 0.06 2.28 8.12 -2.38 -0.02 2.26 16 36 H 0.00 0.05 6.68 -2.39 -0.02 0.04 16 Total: -1.00 -65.40 269.42 -1.50 -66.90 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -0.75 Total: 17.48 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: 2.95 Total: -32.07 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -5.52 Total: -104.04 kcal Atomic # 14 Polarization: 49.92 SS G_CDS: 1.82 Total: 51.74 kcal Total: -65.40 -1.50 -66.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044531497.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.910 kcal (2) G-P(sol) polarization free energy of solvation -65.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds