Wall clock time and date at job start Mon Mar 30 2020 03:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47348 * 2 1 4 4 C 1.50701 * 109.46891 * 240.00343 * 2 1 3 5 5 H 1.08002 * 120.00266 * 245.56390 * 4 2 1 6 6 C 1.37886 * 120.00078 * 65.57015 * 4 2 1 7 7 N 1.31512 * 120.00221 * 198.89827 * 6 4 2 8 8 Si 1.86798 * 119.99550 * 18.61585 * 6 4 2 9 9 H 1.48506 * 109.46790 * 180.27925 * 8 6 4 10 10 H 1.48495 * 109.47646 * 300.27729 * 8 6 4 11 11 H 1.48497 * 109.47172 * 60.28253 * 8 6 4 12 12 N 1.46899 * 109.47452 * 120.00900 * 2 1 3 13 13 C 1.46843 * 111.00256 * 59.20507 * 12 2 1 14 14 C 1.53034 * 109.52387 * 174.16475 * 13 12 2 15 15 C 1.53116 * 109.28299 * 59.17713 * 14 13 12 16 16 C 1.53114 * 109.16324 * 302.35138 * 15 14 13 17 17 H 1.09005 * 109.53299 * 297.69015 * 16 15 14 18 18 C 1.52994 * 109.50934 * 177.59029 * 16 15 14 19 19 N 1.46902 * 109.46854 * 65.19129 * 18 16 15 20 20 C 1.46851 * 110.99815 * 294.99741 * 12 2 1 21 21 H 1.08999 * 109.47055 * 295.06398 * 1 2 3 22 22 H 1.08995 * 109.47133 * 55.06844 * 1 2 3 23 23 H 1.09005 * 109.46997 * 175.06704 * 1 2 3 24 24 H 0.97002 * 119.99674 * 354.67867 * 7 6 4 25 25 H 1.09001 * 109.46541 * 294.18189 * 13 12 2 26 26 H 1.09000 * 109.46130 * 54.14916 * 13 12 2 27 27 H 1.09004 * 109.50299 * 299.23708 * 14 13 12 28 28 H 1.09001 * 109.50605 * 179.12544 * 14 13 12 29 29 H 1.08997 * 109.52973 * 182.43915 * 15 14 13 30 30 H 1.09007 * 109.51784 * 62.25131 * 15 14 13 31 31 H 1.09002 * 109.47939 * 185.19488 * 18 16 15 32 32 H 1.09000 * 109.47314 * 305.19465 * 18 16 15 33 33 H 1.00905 * 110.99929 * 180.02562 * 19 18 16 34 34 H 1.00893 * 111.00441 * 303.95959 * 19 18 16 35 35 H 1.09003 * 109.46057 * 305.85674 * 20 12 2 36 36 H 1.09002 * 109.46050 * 65.82039 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5771 -1.6379 -1.1341 6 6 1.7964 -0.1760 -2.4796 7 7 1.8884 -0.9369 -3.5483 8 14 1.3386 1.6266 -2.6529 9 1 1.1323 1.9492 -4.0878 10 1 0.0866 1.8940 -1.9006 11 1 2.4330 2.4699 -2.1085 12 7 2.0197 -0.6927 1.1993 13 6 1.5335 -2.0776 1.2426 14 6 2.1777 -2.8091 2.4224 15 6 1.8225 -2.0828 3.7226 16 6 2.2967 -0.6298 3.6324 17 1 3.3812 -0.6063 3.5255 18 6 1.8924 0.1195 4.9036 19 7 2.6078 -0.4475 6.0546 20 6 1.6490 0.0386 2.4176 21 1 -0.3633 0.4353 0.9309 22 1 -0.3633 0.5884 -0.8425 23 1 -0.3633 -1.0239 -0.0884 24 1 2.1968 -1.8529 -3.4665 25 1 0.4501 -2.0786 1.3625 26 1 1.7964 -2.5840 0.3139 27 1 3.2604 -2.8206 2.2961 28 1 1.8048 -3.8325 2.4635 29 1 2.3147 -2.5753 4.5612 30 1 0.7425 -2.1051 3.8689 31 1 2.1477 1.1741 4.8007 32 1 0.8181 0.0192 5.0584 33 1 2.3574 0.0305 6.9072 34 1 2.4384 -1.4390 6.1331 35 1 1.9957 1.0693 2.3422 36 1 0.5650 0.0277 2.5320 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044531499.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:54 Heat of formation + Delta-G solvation = -32.573305 kcal Electronic energy + Delta-G solvation = -15013.436779 eV Core-core repulsion = 12723.711369 eV Total energy + Delta-G solvation = -2289.725410 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.40381 -37.10883 -34.97786 -33.69209 -31.57040 -30.36056 -26.97271 -26.05521 -24.58817 -23.00413 -21.23719 -20.36501 -19.28412 -17.19391 -16.57834 -16.28819 -15.90682 -15.29118 -15.18012 -14.96283 -14.66994 -14.34347 -14.02766 -13.65568 -13.26731 -13.04668 -12.95551 -12.55025 -12.46522 -12.00628 -11.75610 -11.67809 -11.50852 -11.26178 -11.07012 -10.96118 -10.28980 -9.56521 -8.92856 -8.71958 -6.30211 1.44384 1.53618 1.71724 2.49513 3.08488 3.18827 3.74943 3.84065 3.93214 4.04526 4.30406 4.45607 4.49132 4.52257 4.55848 4.65796 4.66694 4.73908 4.78559 4.86816 4.96438 5.02046 5.14314 5.18162 5.24018 5.36520 5.47109 5.55365 5.85367 6.07143 6.26357 6.33182 6.63465 6.66998 6.76819 7.46140 8.66816 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047581 B = 0.008433 C = 0.007634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.323255 B = 3319.558809 C = 3667.025829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.186 3.814 3 H 0.031 0.969 4 C -0.586 4.586 5 H 0.023 0.977 6 C -0.023 4.023 7 N -0.940 5.940 8 Si 1.083 2.917 9 H -0.290 1.290 10 H -0.243 1.243 11 H -0.266 1.266 12 N -0.539 5.539 13 C 0.068 3.932 14 C -0.111 4.111 15 C -0.105 4.105 16 C -0.077 4.077 17 H 0.065 0.935 18 C 0.076 3.924 19 N -0.856 5.856 20 C 0.057 3.943 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.035 0.965 24 H 0.250 0.750 25 H 0.022 0.978 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.351 0.649 34 H 0.345 0.655 35 H 0.066 0.934 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.274 1.835 17.970 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.078 3.922 3 H 0.049 0.951 4 C -0.624 4.624 5 H 0.041 0.959 6 C -0.220 4.220 7 N -0.576 5.576 8 Si 0.905 3.095 9 H -0.216 1.216 10 H -0.168 1.168 11 H -0.191 1.191 12 N -0.263 5.263 13 C -0.060 4.060 14 C -0.149 4.149 15 C -0.142 4.142 16 C -0.096 4.096 17 H 0.084 0.916 18 C -0.056 4.056 19 N -0.388 5.388 20 C -0.072 4.072 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.085 0.915 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.541 3.190 16.483 16.980 hybrid contribution -1.076 -1.880 0.713 2.280 sum -3.617 1.311 17.195 17.620 Atomic orbital electron populations 1.22691 0.99847 1.00478 1.00514 1.19458 0.90178 0.94188 0.88404 0.95095 1.22145 1.38763 1.08826 0.92684 0.95916 1.27122 0.94448 1.08569 0.91884 1.71003 1.44991 1.08802 1.32852 0.83596 0.78750 0.70890 0.76259 1.21612 1.16765 1.19147 1.62003 1.60081 1.02223 1.01966 1.21867 0.96030 0.89883 0.98246 1.21571 1.00522 0.98704 0.94133 1.21566 1.00675 0.94902 0.97081 1.21115 1.00434 0.95119 0.92957 0.91628 1.21644 0.95398 0.98691 0.89851 1.58676 1.64571 1.09002 1.06556 1.22139 0.97484 0.97617 0.89948 0.92789 0.92981 0.94567 0.94125 0.95995 0.94021 0.92665 0.90594 0.89941 0.92076 0.91077 0.94810 0.83565 0.84082 0.91514 0.95040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.60 8.14 71.98 0.59 -7.02 16 2 C 0.19 8.90 1.93 44.17 0.09 8.98 16 3 H 0.03 1.49 6.72 -2.39 -0.02 1.47 16 4 C -0.59 -33.94 8.24 25.60 0.21 -33.73 16 5 H 0.02 1.46 6.79 -2.91 -0.02 1.44 16 6 C -0.02 -1.33 5.34 84.66 0.45 -0.88 16 7 N -0.94 -59.85 13.70 21.45 0.29 -59.56 16 8 Si 1.08 50.42 26.46 68.60 1.81 52.23 16 9 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 10 H -0.24 -9.97 5.54 99.48 0.55 -9.42 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 12 N -0.54 -22.75 4.63 -875.52 -4.06 -26.81 16 13 C 0.07 2.71 4.67 86.33 0.40 3.12 16 14 C -0.11 -3.43 6.09 30.64 0.19 -3.25 16 15 C -0.10 -2.58 5.00 30.67 0.15 -2.43 16 16 C -0.08 -2.08 2.56 -10.75 -0.03 -2.10 16 17 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 18 C 0.08 1.57 6.25 86.30 0.54 2.11 16 19 N -0.86 -15.22 9.62 -186.72 -1.80 -17.01 16 20 C 0.06 1.87 4.31 86.32 0.37 2.24 16 21 H 0.05 1.97 6.42 -2.39 -0.02 1.96 16 22 H 0.05 2.27 4.88 -2.39 -0.01 2.26 16 23 H 0.04 1.61 6.80 -2.38 -0.02 1.59 16 24 H 0.25 16.21 8.73 -92.71 -0.81 15.40 16 25 H 0.02 0.86 6.73 -2.39 -0.02 0.84 16 26 H 0.04 1.98 6.24 -2.39 -0.01 1.97 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.08 1.66 6.80 -2.39 -0.02 1.64 16 30 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.35 4.70 9.08 -89.69 -0.81 3.89 16 34 H 0.35 5.40 7.31 -89.70 -0.66 4.75 16 35 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 36 H 0.03 1.00 6.62 -2.39 -0.02 0.99 16 Total: -1.00 -66.25 266.75 -1.38 -67.63 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -0.59 Total: 16.46 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 2.96 Total: -32.94 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -5.56 Total: -103.38 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 1.81 Total: 52.23 kcal Total: -66.25 -1.38 -67.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044531499.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.059 kcal (2) G-P(sol) polarization free energy of solvation -66.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds