Wall clock time and date at job start Mon Mar 30 2020 03:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47240 * 2 1 4 4 C 1.50707 * 109.47029 * 119.99887 * 2 1 3 5 5 H 1.08001 * 120.00162 * 119.99406 * 4 2 1 6 6 C 1.37875 * 119.99730 * 300.00183 * 4 2 1 7 7 N 1.31516 * 120.00240 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99818 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47224 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47310 * 119.99669 * 8 6 4 11 11 H 1.48499 * 109.47518 * 239.99916 * 8 6 4 12 12 N 1.46905 * 109.47289 * 239.99629 * 2 1 3 13 13 C 1.46854 * 110.99782 * 304.05613 * 12 2 1 14 14 C 1.53040 * 109.51887 * 185.84049 * 13 12 2 15 15 C 1.53116 * 109.27411 * 300.81624 * 14 13 12 16 16 C 1.53120 * 109.16437 * 57.66102 * 15 14 13 17 17 C 1.46844 * 110.99979 * 68.26293 * 12 2 1 18 18 H 1.08999 * 109.46117 * 294.17052 * 17 12 2 19 19 C 1.52998 * 109.46207 * 54.14421 * 17 12 2 20 20 N 1.46902 * 109.47152 * 54.38127 * 19 17 12 21 21 H 1.08998 * 109.47240 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47140 * 299.99940 * 1 2 3 23 23 H 1.09000 * 109.46865 * 60.00273 * 1 2 3 24 24 H 0.96998 * 119.99754 * 180.02562 * 7 6 4 25 25 H 1.08995 * 109.46235 * 65.82014 * 13 12 2 26 26 H 1.08996 * 109.45095 * 305.84646 * 13 12 2 27 27 H 1.09005 * 109.50094 * 180.88027 * 14 13 12 28 28 H 1.08997 * 109.50407 * 60.75978 * 14 13 12 29 29 H 1.09002 * 109.51913 * 177.56447 * 15 14 13 30 30 H 1.08994 * 109.52584 * 297.74818 * 15 14 13 31 31 H 1.09001 * 109.50362 * 62.27788 * 16 15 14 32 32 H 1.08999 * 109.50497 * 182.39967 * 16 15 14 33 33 H 1.08998 * 109.47396 * 174.38327 * 19 17 12 34 34 H 1.09001 * 109.47355 * 294.38910 * 19 17 12 35 35 H 1.00896 * 111.00553 * 179.97438 * 20 19 17 36 36 H 1.00893 * 111.00517 * 303.96174 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3212 -1.1203 4.0080 9 1 3.1453 -2.2876 3.6039 10 1 3.1465 -0.1873 4.8166 11 1 1.1659 -1.5866 4.8161 12 7 2.0197 -0.6926 -1.1994 13 6 1.4713 -2.0523 -1.2827 14 6 2.1130 -2.7914 -2.4592 15 6 1.8271 -2.0254 -3.7538 16 6 2.3654 -0.5980 -3.6226 17 6 1.7165 0.0775 -2.4124 18 1 0.6367 0.1192 -2.5556 19 6 2.2664 1.4976 -2.2655 20 7 3.6973 1.4372 -1.9384 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7094 1.1618 3.4844 25 1 0.3927 -2.0004 -1.4311 26 1 1.6853 -2.5873 -0.3575 27 1 1.6944 -3.7953 -2.5303 28 1 3.1901 -2.8557 -2.3046 29 1 2.3188 -2.5248 -4.5886 30 1 0.7518 -1.9946 -3.9289 31 1 3.4465 -0.6278 -3.4864 32 1 2.1271 -0.0348 -4.5249 33 1 2.1303 2.0387 -3.2018 34 1 1.7328 2.0131 -1.4670 35 1 4.0844 2.3634 -1.8364 36 1 3.8556 0.8855 -1.1086 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044559282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:31 Heat of formation + Delta-G solvation = -5.713392 kcal Electronic energy + Delta-G solvation = -15450.358150 eV Core-core repulsion = 13161.797473 eV Total energy + Delta-G solvation = -2288.560677 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.89912 -34.28658 -33.88396 -31.79489 -29.62323 -28.09506 -25.35924 -24.64194 -23.28350 -20.88660 -20.15344 -18.14846 -16.21505 -15.48114 -15.31377 -14.40363 -14.21899 -13.81013 -13.47397 -13.09251 -12.72278 -12.42691 -12.20357 -11.59467 -11.47083 -11.07969 -11.03313 -10.80136 -10.71603 -10.51608 -10.20257 -10.08362 -10.00411 -9.74554 -9.33394 -8.82313 -8.38496 -7.94097 -7.04605 -6.02361 -4.05696 3.28693 3.37057 3.41745 4.40454 4.94940 5.27787 5.31831 5.37373 5.43517 5.49317 5.88370 5.91105 6.02266 6.12653 6.19097 6.29046 6.35989 6.43439 6.50702 6.62654 6.70950 6.77222 6.87363 6.91473 6.97017 7.17843 7.51612 7.72894 7.79296 7.87981 8.16071 8.21855 8.42129 8.65307 9.02074 9.59858 11.04520 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034719 B = 0.010663 C = 0.009536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.277544 B = 2625.248890 C = 2935.603408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.206 3.794 3 H 0.041 0.959 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.521 5.521 13 C 0.064 3.936 14 C -0.117 4.117 15 C -0.119 4.119 16 C -0.101 4.101 17 C 0.085 3.915 18 H 0.029 0.971 19 C 0.070 3.930 20 N -0.843 5.843 21 H 0.029 0.971 22 H 0.086 0.914 23 H 0.005 0.995 24 H 0.259 0.741 25 H 0.021 0.979 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.030 0.970 35 H 0.325 0.675 36 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.147 -1.892 -8.744 9.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.100 3.900 3 H 0.059 0.941 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.213 1.213 12 N -0.246 5.246 13 C -0.064 4.064 14 C -0.155 4.155 15 C -0.157 4.157 16 C -0.139 4.139 17 C -0.024 4.024 18 H 0.047 0.953 19 C -0.061 4.061 20 N -0.373 5.373 21 H 0.049 0.951 22 H 0.105 0.895 23 H 0.024 0.976 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.135 0.865 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.655 -2.193 -9.264 9.663 hybrid contribution -1.095 0.195 1.750 2.074 sum 0.560 -1.998 -7.514 7.795 Atomic orbital electron populations 1.22397 1.01175 0.99315 1.00290 1.19373 0.89663 0.94676 0.86319 0.94084 1.21187 1.30313 1.12441 0.89645 0.91852 1.24934 0.95267 0.95150 0.99010 1.69899 1.37219 1.23149 1.23216 0.86491 0.78506 0.79717 0.82994 1.19711 1.21151 1.21278 1.62189 1.59100 1.01506 1.01779 1.21913 0.95467 0.90982 0.98019 1.21625 1.01516 0.97474 0.94869 1.21581 0.99940 0.96723 0.97451 1.21493 1.02012 0.94309 0.96078 1.21553 0.95980 0.92975 0.91938 0.95314 1.21752 0.89536 0.95925 0.98922 1.58756 1.14129 1.18244 1.46219 0.95147 0.89540 0.97570 0.93148 0.96110 0.90138 0.92955 0.91562 0.92943 0.93211 0.90242 0.93266 0.92460 0.95182 0.86525 0.82307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.25 37.16 0.31 -3.87 16 2 C 0.21 4.99 1.65 -68.86 -0.11 4.87 16 3 H 0.04 1.08 5.57 -51.93 -0.29 0.79 16 4 C -0.50 -13.24 7.87 -34.44 -0.27 -13.51 16 5 H 0.06 1.71 7.00 -52.49 -0.37 1.34 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.13 11.32 55.43 0.63 -24.50 16 8 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 N -0.52 -10.84 3.61 -220.14 -0.80 -11.63 16 13 C 0.06 1.27 4.59 -3.83 -0.02 1.25 16 14 C -0.12 -1.90 6.09 -26.65 -0.16 -2.07 16 15 C -0.12 -1.79 6.00 -26.61 -0.16 -1.95 16 16 C -0.10 -1.63 5.27 -26.65 -0.14 -1.77 16 17 C 0.08 1.57 1.84 -67.73 -0.12 1.44 16 18 H 0.03 0.56 6.82 -51.93 -0.35 0.21 16 19 C 0.07 1.24 5.77 -3.82 -0.02 1.22 16 20 N -0.84 -14.53 9.08 -10.37 -0.09 -14.62 16 21 H 0.03 0.72 6.47 -51.93 -0.34 0.38 16 22 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 23 H 0.01 0.12 6.75 -51.93 -0.35 -0.23 16 24 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.02 0.42 6.58 -51.93 -0.34 0.08 16 26 H 0.08 1.72 6.57 -51.93 -0.34 1.38 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.37 7.76 -51.93 -0.40 0.97 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.03 0.60 6.49 -51.93 -0.34 0.26 16 35 H 0.32 4.91 9.08 -39.29 -0.36 4.55 16 36 H 0.36 7.10 7.50 -39.30 -0.29 6.81 16 LS Contribution 267.33 15.07 4.03 4.03 Total: -1.00 -26.85 267.33 -7.81 -34.67 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -5.76 Total: 8.84 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -0.80 Total: -12.92 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.26 Total: -50.76 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -26.85 -7.81 -34.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044559282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.952 kcal (2) G-P(sol) polarization free energy of solvation -26.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds