Wall clock time and date at job start Mon Mar 30 2020 03:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47240 * 2 1 4 4 C 1.50707 * 109.47029 * 119.99887 * 2 1 3 5 5 H 1.08001 * 120.00162 * 119.99406 * 4 2 1 6 6 C 1.37875 * 119.99730 * 300.00183 * 4 2 1 7 7 N 1.31516 * 120.00240 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99818 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47224 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47310 * 119.99669 * 8 6 4 11 11 H 1.48499 * 109.47518 * 239.99916 * 8 6 4 12 12 N 1.46905 * 109.47289 * 239.99629 * 2 1 3 13 13 C 1.46854 * 110.99782 * 304.05613 * 12 2 1 14 14 C 1.53040 * 109.51887 * 185.84049 * 13 12 2 15 15 C 1.53116 * 109.27411 * 300.81624 * 14 13 12 16 16 C 1.53120 * 109.16437 * 57.66102 * 15 14 13 17 17 C 1.46844 * 110.99979 * 68.26293 * 12 2 1 18 18 H 1.08999 * 109.46117 * 294.17052 * 17 12 2 19 19 C 1.52998 * 109.46207 * 54.14421 * 17 12 2 20 20 N 1.46902 * 109.47152 * 54.38127 * 19 17 12 21 21 H 1.08998 * 109.47240 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47140 * 299.99940 * 1 2 3 23 23 H 1.09000 * 109.46865 * 60.00273 * 1 2 3 24 24 H 0.96998 * 119.99754 * 180.02562 * 7 6 4 25 25 H 1.08995 * 109.46235 * 65.82014 * 13 12 2 26 26 H 1.08996 * 109.45095 * 305.84646 * 13 12 2 27 27 H 1.09005 * 109.50094 * 180.88027 * 14 13 12 28 28 H 1.08997 * 109.50407 * 60.75978 * 14 13 12 29 29 H 1.09002 * 109.51913 * 177.56447 * 15 14 13 30 30 H 1.08994 * 109.52584 * 297.74818 * 15 14 13 31 31 H 1.09001 * 109.50362 * 62.27788 * 16 15 14 32 32 H 1.08999 * 109.50497 * 182.39967 * 16 15 14 33 33 H 1.08998 * 109.47396 * 174.38327 * 19 17 12 34 34 H 1.09001 * 109.47355 * 294.38910 * 19 17 12 35 35 H 1.00896 * 111.00553 * 179.97438 * 20 19 17 36 36 H 1.00893 * 111.00517 * 303.96174 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3212 -1.1203 4.0080 9 1 3.1453 -2.2876 3.6039 10 1 3.1465 -0.1873 4.8166 11 1 1.1659 -1.5866 4.8161 12 7 2.0197 -0.6926 -1.1994 13 6 1.4713 -2.0523 -1.2827 14 6 2.1130 -2.7914 -2.4592 15 6 1.8271 -2.0254 -3.7538 16 6 2.3654 -0.5980 -3.6226 17 6 1.7165 0.0775 -2.4124 18 1 0.6367 0.1192 -2.5556 19 6 2.2664 1.4976 -2.2655 20 7 3.6973 1.4372 -1.9384 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7094 1.1618 3.4844 25 1 0.3927 -2.0004 -1.4311 26 1 1.6853 -2.5873 -0.3575 27 1 1.6944 -3.7953 -2.5303 28 1 3.1901 -2.8557 -2.3046 29 1 2.3188 -2.5248 -4.5886 30 1 0.7518 -1.9946 -3.9289 31 1 3.4465 -0.6278 -3.4864 32 1 2.1271 -0.0348 -4.5249 33 1 2.1303 2.0387 -3.2018 34 1 1.7328 2.0131 -1.4670 35 1 4.0844 2.3634 -1.8364 36 1 3.8556 0.8855 -1.1086 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044559282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:31 Heat of formation + Delta-G solvation = -23.846477 kcal Electronic energy + Delta-G solvation = -15451.144460 eV Core-core repulsion = 13161.797473 eV Total energy + Delta-G solvation = -2289.346986 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.45814 -36.02683 -35.32750 -33.65035 -31.03794 -29.88731 -27.35372 -26.19103 -24.81365 -22.51062 -21.64900 -19.70745 -18.21731 -17.06959 -16.94195 -16.14676 -15.76559 -15.42061 -14.86266 -14.60620 -14.34541 -13.95683 -13.89620 -13.47848 -12.95857 -12.90561 -12.60598 -12.51499 -12.43087 -12.29536 -11.97037 -11.77587 -11.44296 -11.22811 -10.91076 -10.73242 -10.43994 -9.38790 -8.74032 -8.10130 -6.19574 1.39900 1.42900 1.53958 2.42945 3.19288 3.36768 3.88954 4.03838 4.08716 4.18902 4.45636 4.54585 4.55680 4.69991 4.75614 4.81954 4.87550 4.88765 5.02091 5.11999 5.15334 5.21475 5.24934 5.40793 5.41533 5.59691 5.66315 5.74555 5.85259 6.23328 6.37859 6.56671 6.76179 6.87067 6.96559 7.49971 8.95775 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034719 B = 0.010663 C = 0.009536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.277544 B = 2625.248890 C = 2935.603408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.214 3.786 3 H 0.020 0.980 4 C -0.507 4.507 5 H 0.055 0.945 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.955 3.045 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.285 1.285 12 N -0.523 5.523 13 C 0.064 3.936 14 C -0.110 4.110 15 C -0.115 4.115 16 C -0.094 4.094 17 C 0.081 3.919 18 H 0.020 0.980 19 C 0.073 3.927 20 N -0.836 5.836 21 H 0.027 0.973 22 H 0.059 0.941 23 H 0.018 0.982 24 H 0.259 0.741 25 H 0.013 0.987 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.002 0.998 35 H 0.337 0.663 36 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.695 -2.705 -10.120 10.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.107 3.893 3 H 0.037 0.963 4 C -0.546 4.546 5 H 0.074 0.926 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.211 1.211 12 N -0.247 5.247 13 C -0.065 4.065 14 C -0.148 4.148 15 C -0.153 4.153 16 C -0.132 4.132 17 C -0.028 4.028 18 H 0.038 0.962 19 C -0.058 4.058 20 N -0.366 5.366 21 H 0.046 0.954 22 H 0.077 0.923 23 H 0.037 0.963 24 H 0.068 0.932 25 H 0.031 0.969 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.020 0.980 35 H 0.148 0.852 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.212 -3.003 -10.665 11.298 hybrid contribution -1.273 0.471 2.143 2.537 sum 0.939 -2.532 -8.522 8.939 Atomic orbital electron populations 1.22220 1.01385 0.98762 0.99493 1.19105 0.89264 0.93621 0.87353 0.96265 1.21423 1.30067 1.12211 0.90893 0.92647 1.25642 0.95526 0.95824 1.01694 1.70019 1.38161 1.24295 1.23717 0.85548 0.77944 0.78726 0.79638 1.19242 1.20848 1.21089 1.62136 1.58924 1.02030 1.01606 1.21927 0.95330 0.90494 0.98705 1.21575 1.00935 0.98290 0.93966 1.21574 1.00491 0.95806 0.97411 1.21443 1.01075 0.95238 0.95402 1.21690 0.95796 0.93393 0.91895 0.96226 1.21748 0.89369 0.95596 0.99123 1.58762 1.13765 1.18906 1.45148 0.95413 0.92264 0.96292 0.93195 0.96883 0.92553 0.90788 0.91991 0.90181 0.92775 0.91167 0.91091 0.89915 0.97975 0.85179 0.83941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.85 8.25 71.98 0.59 -7.26 16 2 C 0.21 10.54 1.65 44.17 0.07 10.61 16 3 H 0.02 1.05 5.57 -2.39 -0.01 1.04 16 4 C -0.51 -27.44 7.87 25.60 0.20 -27.24 16 5 H 0.06 3.03 7.00 -2.91 -0.02 3.01 16 6 C 0.01 0.62 5.30 84.65 0.45 1.06 16 7 N -0.92 -52.67 11.32 21.45 0.24 -52.42 16 8 Si 0.95 43.75 29.54 68.60 2.03 45.77 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 N -0.52 -21.63 3.61 -850.38 -3.07 -24.71 16 13 C 0.06 2.47 4.59 86.33 0.40 2.87 16 14 C -0.11 -3.32 6.09 30.65 0.19 -3.13 16 15 C -0.12 -3.06 6.00 30.67 0.18 -2.87 16 16 C -0.09 -2.75 5.27 30.65 0.16 -2.59 16 17 C 0.08 2.90 1.84 44.94 0.08 2.99 16 18 H 0.02 0.75 6.82 -2.39 -0.02 0.73 16 19 C 0.07 2.53 5.77 86.30 0.50 3.03 16 20 N -0.84 -28.08 9.08 -186.72 -1.70 -29.78 16 21 H 0.03 1.33 6.47 -2.39 -0.02 1.31 16 22 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 23 H 0.02 0.84 6.75 -2.39 -0.02 0.82 16 24 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 25 H 0.01 0.52 6.58 -2.39 -0.02 0.51 16 26 H 0.06 2.43 6.57 -2.39 -0.02 2.42 16 27 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 2.23 7.76 -2.39 -0.02 2.21 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.00 0.08 6.49 -2.39 -0.02 0.07 16 35 H 0.34 9.86 9.08 -89.70 -0.81 9.04 16 36 H 0.35 13.62 7.50 -89.70 -0.67 12.95 16 Total: -1.00 -57.23 267.33 -0.09 -57.32 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -0.41 Total: 26.35 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 2.83 Total: -22.53 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -4.53 Total: -106.91 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -57.23 -0.09 -57.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044559282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.473 kcal (2) G-P(sol) polarization free energy of solvation -57.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds