Wall clock time and date at job start Mon Mar 30 2020 03:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47100 * 2 1 4 4 C 1.53001 * 109.46883 * 240.00210 * 2 1 3 5 5 N 1.46499 * 109.46773 * 185.00201 * 4 2 1 6 6 C 1.36940 * 119.99877 * 180.02562 * 5 4 2 7 7 H 1.07994 * 119.99932 * 359.97438 * 6 5 4 8 8 C 1.38817 * 119.99625 * 179.97438 * 6 5 4 9 9 N 1.31613 * 120.00453 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99469 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47494 * 59.99985 * 10 8 6 12 12 H 1.48505 * 109.47146 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47331 * 299.99996 * 10 8 6 14 14 N 1.46895 * 109.46869 * 120.00073 * 2 1 3 15 15 C 1.46847 * 110.99982 * 299.99633 * 14 2 1 16 16 C 1.53034 * 109.51345 * 185.84805 * 15 14 2 17 17 C 1.53123 * 109.27992 * 300.80438 * 16 15 14 18 18 C 1.53127 * 109.15019 * 57.67185 * 17 16 15 19 19 C 1.46843 * 110.99970 * 64.20998 * 14 2 1 20 20 H 1.09003 * 109.47359 * 300.00563 * 1 2 3 21 21 H 1.09002 * 109.46852 * 59.99991 * 1 2 3 22 22 H 1.09000 * 109.47100 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46926 * 304.99547 * 4 2 1 24 24 H 1.08997 * 109.47826 * 65.00084 * 4 2 1 25 25 H 0.97001 * 120.00671 * 359.97438 * 5 4 2 26 26 H 0.96996 * 120.00356 * 179.97438 * 9 8 6 27 27 H 1.09002 * 109.46481 * 305.85957 * 15 14 2 28 28 H 1.08994 * 109.46283 * 65.83811 * 15 14 2 29 29 H 1.08997 * 109.50952 * 60.75924 * 16 15 14 30 30 H 1.08998 * 109.50459 * 180.87821 * 16 15 14 31 31 H 1.09003 * 109.53012 * 297.76758 * 17 16 15 32 32 H 1.08997 * 109.57453 * 177.60035 * 17 16 15 33 33 H 1.08997 * 109.49981 * 182.39822 * 18 17 16 34 34 H 1.08998 * 109.53089 * 62.30397 * 18 17 16 35 35 H 1.08993 * 109.46313 * 294.17341 * 19 14 2 36 36 H 1.09000 * 109.46480 * 54.15451 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1838 -1.4379 -2.2073 7 1 3.6468 -1.8430 -3.0521 8 6 5.5673 -1.5371 -2.1518 9 7 6.2219 -1.0429 -1.1225 10 14 6.5001 -2.3719 -3.5384 11 1 6.2427 -1.6524 -4.8117 12 1 7.9550 -2.3468 -3.2417 13 1 6.0443 -3.7796 -3.6644 14 7 2.0196 -0.6925 1.1994 15 6 1.5488 -0.0266 2.4206 16 6 2.1938 -0.6843 3.6426 17 6 1.8215 -2.1693 3.6730 18 6 2.2800 -2.8288 2.3693 19 6 1.6326 -2.1089 1.1840 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6054 -1.7198 -1.2952 24 1 1.7517 -0.1583 -2.1370 25 1 3.9825 -0.4622 -0.4319 26 1 7.1885 -1.1125 -1.0836 27 1 1.8234 1.0278 2.3883 28 1 0.4648 -0.1175 2.4890 29 1 3.2772 -0.5818 3.5818 30 1 1.8323 -0.2001 4.5498 31 1 0.7410 -2.2721 3.7729 32 1 2.3130 -2.6517 4.5178 33 1 1.9800 -3.8767 2.3667 34 1 3.3648 -2.7606 2.2883 35 1 0.5483 -2.1900 1.2581 36 1 1.9684 -2.5671 0.2537 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044993444.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:52 Heat of formation + Delta-G solvation = 5.518271 kcal Electronic energy + Delta-G solvation = -14993.919582 eV Core-core repulsion = 12705.845947 eV Total energy + Delta-G solvation = -2288.073635 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.10735 -35.31838 -33.30479 -30.84172 -30.30504 -29.18738 -25.67528 -23.94109 -22.80142 -22.17776 -20.16758 -18.74579 -16.86120 -15.94686 -14.85235 -14.47508 -14.21708 -13.94104 -13.78870 -13.31863 -13.04646 -12.71370 -12.19333 -12.14731 -11.83081 -11.62974 -11.16194 -10.91292 -10.74335 -10.67168 -10.43337 -10.32027 -10.02585 -9.98874 -9.69110 -9.56628 -8.73816 -7.69660 -6.72866 -5.61266 -2.88075 3.51130 3.55293 3.56441 4.32553 4.70689 5.08270 5.14808 5.19213 5.33733 5.50534 5.60908 5.64011 5.67117 5.71121 5.84898 5.86007 5.97637 6.08152 6.14282 6.16527 6.22520 6.31928 6.36972 6.45814 6.51808 6.54538 6.75932 6.79665 6.92390 7.65898 7.67556 7.80993 8.58016 9.69753 10.33070 10.71474 11.61088 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035209 B = 0.008591 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.056842 B = 3258.363467 C = 3642.577782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.074 3.926 3 H 0.080 0.920 4 C 0.160 3.840 5 N -0.721 5.721 6 C -0.237 4.237 7 H 0.065 0.935 8 C -0.014 4.014 9 N -0.929 5.929 10 Si 0.903 3.097 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.288 1.288 14 N -0.514 5.514 15 C 0.055 3.945 16 C -0.116 4.116 17 C -0.118 4.118 18 C -0.117 4.117 19 C 0.057 3.943 20 H 0.052 0.948 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.016 0.984 24 H 0.018 0.982 25 H 0.393 0.607 26 H 0.253 0.747 27 H 0.068 0.932 28 H 0.027 0.973 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.021 0.979 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.273 0.280 8.093 13.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.035 4.035 3 H 0.098 0.902 4 C 0.031 3.969 5 N -0.366 5.366 6 C -0.369 4.369 7 H 0.083 0.917 8 C -0.210 4.210 9 N -0.578 5.578 10 Si 0.734 3.266 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.215 1.215 14 N -0.238 5.238 15 C -0.073 4.073 16 C -0.154 4.154 17 C -0.155 4.155 18 C -0.155 4.155 19 C -0.071 4.071 20 H 0.071 0.929 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.033 0.967 24 H 0.035 0.965 25 H 0.229 0.771 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.039 0.961 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.699 0.221 7.947 13.329 hybrid contribution -0.206 -0.386 -0.544 0.698 sum -10.905 -0.166 7.404 13.182 Atomic orbital electron populations 1.22418 0.98331 1.01795 1.01609 1.21948 0.91562 0.98821 0.91165 0.90190 1.20711 0.87264 0.96107 0.92772 1.42261 0.99513 1.69888 1.24912 1.19186 0.89421 1.29267 0.98981 0.91686 1.24693 0.96412 1.01945 0.97922 1.69674 1.06969 1.51004 1.30114 0.86337 0.79082 0.79312 0.81853 1.21486 1.21801 1.21490 1.61957 1.59236 1.01878 1.00723 1.22061 0.96414 0.98296 0.90531 1.21571 1.02002 0.95303 0.96541 1.21559 1.00018 0.96032 0.97940 1.21573 1.02270 0.97901 0.93723 1.22095 0.96055 0.88928 1.00001 0.92928 0.92238 0.92648 0.96673 0.96460 0.77150 0.93711 0.91322 0.95526 0.90829 0.92376 0.93013 0.92414 0.92339 0.90534 0.96097 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 8.50 37.16 0.32 -2.22 16 2 C 0.07 1.28 2.57 -67.71 -0.17 1.10 16 3 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.16 3.36 5.10 -4.04 -0.02 3.34 16 5 N -0.72 -18.92 5.43 -59.91 -0.33 -19.24 16 6 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 7 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -28.87 13.06 55.49 0.72 -28.15 16 10 Si 0.90 22.97 29.55 -169.99 -5.02 17.95 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 N -0.51 -8.92 4.12 -226.70 -0.93 -9.85 16 15 C 0.06 0.80 4.89 -3.84 -0.02 0.78 16 16 C -0.12 -1.56 6.09 -26.65 -0.16 -1.72 16 17 C -0.12 -1.53 6.00 -26.60 -0.16 -1.69 16 18 C -0.12 -1.79 6.09 -26.64 -0.16 -1.95 16 19 C 0.06 0.95 4.67 -3.83 -0.02 0.94 16 20 H 0.05 0.67 6.54 -51.93 -0.34 0.33 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.05 0.77 6.63 -51.93 -0.34 0.43 16 23 H 0.02 0.33 6.51 -51.93 -0.34 -0.01 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.39 11.04 7.34 -40.82 -0.30 10.74 16 26 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 28 H 0.03 0.36 6.63 -51.93 -0.34 0.02 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.02 0.32 6.71 -51.93 -0.35 -0.03 16 36 H 0.09 1.75 6.01 -51.93 -0.31 1.44 16 LS Contribution 276.82 15.07 4.17 4.17 Total: -1.00 -30.43 276.82 -8.13 -38.56 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.10 Total: 5.47 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -0.65 Total: -8.91 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.54 Total: -57.24 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.43 -8.13 -38.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044993444.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.082 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds