Wall clock time and date at job start Mon Mar 30 2020 03:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47100 * 2 1 4 4 C 1.53001 * 109.46883 * 240.00210 * 2 1 3 5 5 N 1.46499 * 109.46773 * 185.00201 * 4 2 1 6 6 C 1.36940 * 119.99877 * 180.02562 * 5 4 2 7 7 H 1.07994 * 119.99932 * 359.97438 * 6 5 4 8 8 C 1.38817 * 119.99625 * 179.97438 * 6 5 4 9 9 N 1.31613 * 120.00453 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99469 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47494 * 59.99985 * 10 8 6 12 12 H 1.48505 * 109.47146 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47331 * 299.99996 * 10 8 6 14 14 N 1.46895 * 109.46869 * 120.00073 * 2 1 3 15 15 C 1.46847 * 110.99982 * 299.99633 * 14 2 1 16 16 C 1.53034 * 109.51345 * 185.84805 * 15 14 2 17 17 C 1.53123 * 109.27992 * 300.80438 * 16 15 14 18 18 C 1.53127 * 109.15019 * 57.67185 * 17 16 15 19 19 C 1.46843 * 110.99970 * 64.20998 * 14 2 1 20 20 H 1.09003 * 109.47359 * 300.00563 * 1 2 3 21 21 H 1.09002 * 109.46852 * 59.99991 * 1 2 3 22 22 H 1.09000 * 109.47100 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46926 * 304.99547 * 4 2 1 24 24 H 1.08997 * 109.47826 * 65.00084 * 4 2 1 25 25 H 0.97001 * 120.00671 * 359.97438 * 5 4 2 26 26 H 0.96996 * 120.00356 * 179.97438 * 9 8 6 27 27 H 1.09002 * 109.46481 * 305.85957 * 15 14 2 28 28 H 1.08994 * 109.46283 * 65.83811 * 15 14 2 29 29 H 1.08997 * 109.50952 * 60.75924 * 16 15 14 30 30 H 1.08998 * 109.50459 * 180.87821 * 16 15 14 31 31 H 1.09003 * 109.53012 * 297.76758 * 17 16 15 32 32 H 1.08997 * 109.57453 * 177.60035 * 17 16 15 33 33 H 1.08997 * 109.49981 * 182.39822 * 18 17 16 34 34 H 1.08998 * 109.53089 * 62.30397 * 18 17 16 35 35 H 1.08993 * 109.46313 * 294.17341 * 19 14 2 36 36 H 1.09000 * 109.46480 * 54.15451 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1838 -1.4379 -2.2073 7 1 3.6468 -1.8430 -3.0521 8 6 5.5673 -1.5371 -2.1518 9 7 6.2219 -1.0429 -1.1225 10 14 6.5001 -2.3719 -3.5384 11 1 6.2427 -1.6524 -4.8117 12 1 7.9550 -2.3468 -3.2417 13 1 6.0443 -3.7796 -3.6644 14 7 2.0196 -0.6925 1.1994 15 6 1.5488 -0.0266 2.4206 16 6 2.1938 -0.6843 3.6426 17 6 1.8215 -2.1693 3.6730 18 6 2.2800 -2.8288 2.3693 19 6 1.6326 -2.1089 1.1840 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6054 -1.7198 -1.2952 24 1 1.7517 -0.1583 -2.1370 25 1 3.9825 -0.4622 -0.4319 26 1 7.1885 -1.1125 -1.0836 27 1 1.8234 1.0278 2.3883 28 1 0.4648 -0.1175 2.4890 29 1 3.2772 -0.5818 3.5818 30 1 1.8323 -0.2001 4.5498 31 1 0.7410 -2.2721 3.7729 32 1 2.3130 -2.6517 4.5178 33 1 1.9800 -3.8767 2.3667 34 1 3.3648 -2.7606 2.2883 35 1 0.5483 -2.1900 1.2581 36 1 1.9684 -2.5671 0.2537 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044993444.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:52 Heat of formation + Delta-G solvation = -14.805082 kcal Electronic energy + Delta-G solvation = -14994.800869 eV Core-core repulsion = 12705.845947 eV Total energy + Delta-G solvation = -2288.954922 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.39654 -36.88026 -35.08495 -32.67366 -31.62144 -30.56027 -27.43228 -25.28314 -24.41947 -23.69474 -21.51215 -20.02949 -18.99979 -17.28110 -16.68691 -15.96025 -15.56828 -15.33595 -15.18526 -14.91480 -14.51650 -14.21348 -13.71279 -13.47179 -13.15887 -12.87250 -12.83839 -12.71164 -12.39388 -12.20222 -12.05066 -11.76470 -11.55372 -11.51349 -11.17748 -11.03429 -10.86806 -8.96737 -8.87130 -7.87056 -5.14166 1.46931 1.50441 1.56513 2.59390 3.06284 3.44676 3.88944 3.96471 4.01793 4.10327 4.22697 4.38578 4.42640 4.48763 4.60856 4.67391 4.69161 4.82589 4.89291 4.91277 4.95943 5.04192 5.12224 5.14850 5.18361 5.28732 5.37132 5.43453 5.51066 5.56802 6.31483 6.38228 6.43923 7.41361 8.23140 8.48955 9.36001 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035209 B = 0.008591 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.056842 B = 3258.363467 C = 3642.577782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.080 3.920 3 H 0.071 0.929 4 C 0.158 3.842 5 N -0.732 5.732 6 C -0.244 4.244 7 H 0.070 0.930 8 C -0.076 4.076 9 N -0.966 5.966 10 Si 0.971 3.029 11 H -0.279 1.279 12 H -0.295 1.295 13 H -0.280 1.280 14 N -0.541 5.541 15 C 0.055 3.945 16 C -0.115 4.115 17 C -0.111 4.111 18 C -0.116 4.116 19 C 0.062 3.938 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.016 0.984 24 H 0.019 0.981 25 H 0.381 0.619 26 H 0.249 0.751 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.006 0.137 8.573 15.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.029 4.029 3 H 0.089 0.911 4 C 0.031 3.969 5 N -0.375 5.375 6 C -0.376 4.376 7 H 0.088 0.912 8 C -0.268 4.268 9 N -0.616 5.616 10 Si 0.800 3.200 11 H -0.205 1.205 12 H -0.222 1.222 13 H -0.206 1.206 14 N -0.266 5.266 15 C -0.072 4.072 16 C -0.153 4.153 17 C -0.148 4.148 18 C -0.154 4.154 19 C -0.065 4.065 20 H 0.090 0.910 21 H 0.088 0.912 22 H 0.075 0.925 23 H 0.034 0.966 24 H 0.036 0.964 25 H 0.214 0.786 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.482 0.075 8.413 15.052 hybrid contribution 0.280 -0.333 -0.691 0.817 sum -12.202 -0.258 7.722 14.442 Atomic orbital electron populations 1.22290 0.95149 1.02355 1.03118 1.21789 0.93909 0.97525 0.89669 0.91075 1.20876 0.84480 0.96566 0.94986 1.42417 1.01645 1.69540 1.23883 1.19601 0.90010 1.28542 0.99469 0.91194 1.25519 0.97406 1.03325 1.00533 1.69849 1.06774 1.52819 1.32207 0.85253 0.77200 0.78497 0.79040 1.20482 1.22166 1.20611 1.61891 1.60612 1.02323 1.01787 1.22131 0.97546 0.98095 0.89437 1.21584 1.00451 0.95947 0.97325 1.21523 1.01243 0.95413 0.96651 1.21556 0.99903 0.99061 0.94897 1.21971 0.97115 0.88662 0.98777 0.90964 0.91210 0.92467 0.96605 0.96351 0.78617 0.94266 0.91289 0.93547 0.93358 0.89490 0.91020 0.91102 0.90923 0.94131 0.94062 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.29 8.50 71.98 0.61 -3.68 16 2 C 0.08 2.71 2.57 44.92 0.12 2.82 16 3 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 4 C 0.16 6.67 5.10 86.38 0.44 7.11 16 5 N -0.73 -39.27 5.43 -343.46 -1.87 -41.13 16 6 C -0.24 -14.25 9.99 84.03 0.84 -13.41 16 7 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 8 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 9 N -0.97 -61.49 13.06 21.65 0.28 -61.20 16 10 Si 0.97 47.76 29.55 68.60 2.03 49.78 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 13 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 14 N -0.54 -18.50 4.12 -871.15 -3.59 -22.09 16 15 C 0.06 1.49 4.89 86.32 0.42 1.91 16 16 C -0.12 -2.86 6.09 30.65 0.19 -2.67 16 17 C -0.11 -2.61 6.00 30.68 0.18 -2.43 16 18 C -0.12 -3.51 6.09 30.65 0.19 -3.32 16 19 C 0.06 2.06 4.67 86.33 0.40 2.46 16 20 H 0.07 1.57 6.54 -2.39 -0.02 1.55 16 21 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.06 1.43 6.63 -2.39 -0.02 1.42 16 23 H 0.02 0.68 6.51 -2.39 -0.02 0.67 16 24 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.38 22.11 7.34 -92.71 -0.68 21.43 16 26 H 0.25 15.36 8.31 -92.71 -0.77 14.58 16 27 H 0.07 1.83 8.12 -2.39 -0.02 1.81 16 28 H 0.05 1.08 6.63 -2.39 -0.02 1.06 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.04 1.18 6.71 -2.39 -0.02 1.16 16 36 H 0.05 2.10 6.01 -2.39 -0.01 2.09 16 Total: -1.00 -65.98 276.82 1.07 -64.91 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.36 Total: 24.99 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 3.86 Total: -15.26 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -5.18 Total: -124.43 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.78 kcal Total: -65.98 1.07 -64.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044993444.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.102 kcal (2) G-P(sol) polarization free energy of solvation -65.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds