Wall clock time and date at job start Mon Mar 30 2020 03:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47154 * 89.99418 * 8 6 4 10 10 H 1.48493 * 109.47010 * 209.99942 * 8 6 4 11 11 H 1.48502 * 109.46736 * 329.99638 * 8 6 4 12 12 N 1.46895 * 109.47264 * 239.99375 * 2 1 3 13 13 C 1.47915 * 110.99858 * 74.01722 * 12 2 1 14 14 C 1.50802 * 108.49897 * 153.79057 * 13 12 2 15 15 C 1.53693 * 112.10099 * 92.55118 * 14 13 12 16 16 N 1.48068 * 112.47047 * 318.55335 * 15 14 13 17 17 C 1.46897 * 110.99886 * 192.20273 * 16 15 14 18 18 C 1.44579 * 113.85474 * 318.31672 * 16 15 14 19 19 C 1.40019 * 111.00167 * 306.04979 * 12 2 1 20 20 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 22 22 H 1.09002 * 109.46792 * 60.00409 * 1 2 3 23 23 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 24 24 H 1.08997 * 109.63404 * 273.49521 * 13 12 2 25 25 H 1.09004 * 109.63084 * 34.08882 * 13 12 2 26 26 H 1.08998 * 108.95333 * 331.87309 * 14 13 12 27 27 H 1.09000 * 108.88459 * 213.18259 * 14 13 12 28 28 H 1.08996 * 108.88384 * 197.78333 * 15 14 13 29 29 H 1.09001 * 108.88444 * 79.32296 * 15 14 13 30 30 H 1.08999 * 109.47275 * 187.68920 * 17 16 15 31 31 H 1.09004 * 109.47195 * 307.68294 * 17 16 15 32 32 H 1.08997 * 109.47483 * 67.68686 * 17 16 15 33 33 H 1.09003 * 109.57053 * 334.42190 * 18 16 15 34 34 H 1.08994 * 109.67726 * 214.10627 * 18 16 15 35 35 H 1.08996 * 108.95481 * 308.76636 * 19 12 2 36 36 H 1.08997 * 108.95541 * 67.50667 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.7038 -0.2360 2.4828 7 7 0.9526 0.8368 2.6033 8 14 2.3270 -1.1160 4.0081 9 1 3.6381 -0.5451 4.4081 10 1 1.3520 -0.9398 5.1142 11 1 2.4860 -2.5630 3.7144 12 7 2.0197 -0.6926 -1.1993 13 6 1.8379 0.1437 -2.4057 14 6 2.8702 -0.2604 -3.4280 15 6 2.3405 -1.3344 -4.3914 16 7 1.5430 -2.3721 -3.6989 17 6 1.2985 -3.5226 -4.5789 18 6 2.1055 -2.7960 -2.4362 19 6 1.4617 -1.9726 -1.3025 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5140 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7218 1.1708 3.4843 24 1 0.8388 -0.0126 -2.8126 25 1 1.9707 1.1941 -2.1466 26 1 3.7470 -0.6499 -2.9109 27 1 3.1604 0.6190 -4.0030 28 1 3.1859 -1.8115 -4.8871 29 1 1.7165 -0.8549 -5.1456 30 1 0.5998 -4.2065 -4.0971 31 1 0.8754 -3.1755 -5.5216 32 1 2.2387 -4.0394 -4.7710 33 1 3.1827 -2.6295 -2.4421 34 1 1.9005 -3.8551 -2.2802 35 1 1.6041 -2.4981 -0.3583 36 1 0.3934 -1.8786 -1.4975 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246617.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:06 Heat of formation + Delta-G solvation = -2.562605 kcal Electronic energy + Delta-G solvation = -15182.249320 eV Core-core repulsion = 12893.825271 eV Total energy + Delta-G solvation = -2288.424048 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.46876 -37.58323 -34.81159 -33.43531 -31.29092 -28.82403 -27.36588 -26.56465 -25.35473 -23.13225 -20.82712 -20.73755 -18.20121 -17.30289 -16.63931 -16.34019 -15.99292 -15.78506 -15.04975 -14.49725 -14.40670 -13.89850 -13.71185 -13.49052 -13.03596 -12.86930 -12.66367 -12.45647 -12.32427 -12.27727 -12.09869 -11.99550 -11.70253 -11.41132 -11.36009 -10.83996 -10.46519 -9.04757 -8.67085 -8.08274 -6.19170 1.43645 1.43833 1.54476 2.44620 3.05289 3.20629 3.46696 4.01264 4.17752 4.28881 4.33462 4.52678 4.55052 4.64135 4.70678 4.75955 4.80416 4.87089 4.97931 5.01293 5.04506 5.09021 5.16567 5.17850 5.37118 5.45111 5.56289 5.74680 5.84883 6.24415 6.29917 6.33982 6.67748 6.92298 7.06844 7.50453 8.97894 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.046683 B = 0.008429 C = 0.007898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.641231 B = 3321.169965 C = 3544.440528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.220 3.780 3 H 0.004 0.996 4 C -0.513 4.513 5 H 0.056 0.944 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.959 3.041 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.552 5.552 13 C 0.072 3.928 14 C -0.113 4.113 15 C 0.069 3.931 16 N -0.576 5.576 17 C 0.034 3.966 18 C 0.074 3.926 19 C 0.091 3.909 20 H 0.028 0.972 21 H 0.059 0.941 22 H 0.018 0.982 23 H 0.261 0.739 24 H 0.032 0.968 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.029 0.971 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.888 -6.018 -12.650 14.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.113 3.887 3 H 0.022 0.978 4 C -0.551 4.551 5 H 0.074 0.926 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.193 1.193 12 N -0.276 5.276 13 C -0.055 4.055 14 C -0.151 4.151 15 C -0.058 4.058 16 N -0.301 5.301 17 C -0.113 4.113 18 C -0.055 4.055 19 C -0.039 4.039 20 H 0.048 0.952 21 H 0.078 0.922 22 H 0.037 0.963 23 H 0.070 0.930 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 1.871 -5.786 -12.383 13.795 hybrid contribution -0.019 -0.297 0.899 0.947 sum 1.853 -6.083 -11.484 13.127 Atomic orbital electron populations 1.22140 1.00555 0.98865 0.99468 1.19048 0.89756 0.92690 0.87213 0.97796 1.21402 1.30461 1.12290 0.90970 0.92620 1.25709 0.95454 0.95837 1.01865 1.70024 1.38246 1.24067 1.23956 0.85534 0.77948 0.79089 0.78916 1.20273 1.20986 1.19280 1.59474 1.61695 1.03270 1.03157 1.21642 0.97780 0.95727 0.90368 1.21436 0.98303 0.98941 0.96452 1.22377 0.95592 0.92216 0.95568 1.60679 1.51352 1.13302 1.04804 1.22370 1.00166 0.91774 0.97012 1.21860 0.97040 0.97952 0.88653 1.20776 0.95214 0.90492 0.97463 0.95245 0.92198 0.96302 0.93022 0.94980 0.93073 0.92401 0.89421 0.93942 0.90255 0.91361 0.90543 0.95201 0.94027 0.90300 0.92753 0.97613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.71 8.25 71.98 0.59 -7.11 16 2 C 0.22 11.54 2.26 44.17 0.10 11.64 16 3 H 0.00 0.24 7.70 -2.39 -0.02 0.22 16 4 C -0.51 -28.85 7.80 25.60 0.20 -28.65 16 5 H 0.06 3.13 7.09 -2.91 -0.02 3.11 16 6 C 0.01 0.53 5.30 84.65 0.45 0.98 16 7 N -0.92 -54.14 11.34 21.45 0.24 -53.90 16 8 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 N -0.55 -24.42 4.01 -891.51 -3.57 -28.00 16 13 C 0.07 2.71 4.69 85.39 0.40 3.11 16 14 C -0.11 -3.32 5.36 30.11 0.16 -3.16 16 15 C 0.07 1.75 5.46 86.31 0.47 2.22 16 16 N -0.58 -16.31 4.19 -921.45 -3.87 -20.17 16 17 C 0.03 0.73 9.28 127.69 1.19 1.91 16 18 C 0.07 2.37 5.45 87.14 0.47 2.84 16 19 C 0.09 3.74 4.19 87.95 0.37 4.11 16 20 H 0.03 1.46 6.53 -2.39 -0.02 1.44 16 21 H 0.06 3.36 6.09 -2.38 -0.01 3.35 16 22 H 0.02 0.86 7.54 -2.39 -0.02 0.84 16 23 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 24 H 0.03 1.23 7.41 -2.39 -0.02 1.21 16 25 H 0.05 1.99 7.59 -2.38 -0.02 1.97 16 26 H 0.06 1.87 7.23 -2.39 -0.02 1.85 16 27 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.04 0.95 8.03 -2.39 -0.02 0.93 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 1.40 8.07 -2.39 -0.02 1.38 16 31 H 0.08 1.39 8.11 -2.38 -0.02 1.37 16 32 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.04 1.38 6.93 -2.39 -0.02 1.36 16 34 H 0.08 2.23 7.58 -2.39 -0.02 2.22 16 35 H 0.05 2.46 6.43 -2.39 -0.02 2.45 16 36 H 0.01 0.26 6.45 -2.39 -0.02 0.24 16 Total: -1.00 -61.23 269.97 0.27 -60.97 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 1.03 Total: 6.79 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 4.40 Total: -12.11 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -7.19 Total: -102.07 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -61.23 0.27 -60.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246617.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.405 kcal (2) G-P(sol) polarization free energy of solvation -61.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds