Wall clock time and date at job start Mon Mar 30 2020 03:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.50701 * 109.46826 * 239.99870 * 2 1 3 5 5 H 1.08002 * 120.00386 * 240.00255 * 4 2 1 6 6 C 1.37883 * 119.99808 * 60.00605 * 4 2 1 7 7 N 1.31508 * 119.99941 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99920 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47470 * 59.99694 * 8 6 4 10 10 H 1.48503 * 109.47124 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47300 * 299.99618 * 8 6 4 12 12 N 1.46894 * 109.47173 * 120.00348 * 2 1 3 13 13 C 1.48066 * 111.00096 * 303.73182 * 12 2 1 14 14 C 1.53696 * 112.47202 * 192.20066 * 13 12 2 15 15 C 1.50796 * 112.10112 * 318.54783 * 14 13 12 16 16 N 1.47913 * 108.49708 * 92.55156 * 15 14 13 17 17 C 1.46906 * 111.00084 * 153.79190 * 16 15 14 18 18 C 1.40014 * 114.06678 * 280.07998 * 16 15 14 19 19 C 1.44575 * 111.00137 * 176.04437 * 12 2 1 20 20 H 1.08995 * 109.46711 * 59.99585 * 1 2 3 21 21 H 1.08998 * 109.47387 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46785 * 299.99776 * 1 2 3 23 23 H 0.97004 * 120.00134 * 180.02562 * 7 6 4 24 24 H 1.09001 * 108.88109 * 312.96985 * 13 12 2 25 25 H 1.09004 * 108.88352 * 71.52712 * 13 12 2 26 26 H 1.08997 * 108.95782 * 79.22330 * 14 13 12 27 27 H 1.09001 * 108.95395 * 197.96536 * 14 13 12 28 28 H 1.09006 * 109.63599 * 332.85116 * 15 14 13 29 29 H 1.08998 * 109.63771 * 212.25689 * 15 14 13 30 30 H 1.08992 * 109.47459 * 187.96740 * 17 16 15 31 31 H 1.09004 * 109.47040 * 307.96891 * 17 16 15 32 32 H 1.09000 * 109.47033 * 67.96843 * 17 16 15 33 33 H 1.09003 * 108.95844 * 182.47750 * 18 16 15 34 34 H 1.09006 * 108.95542 * 301.21979 * 18 16 15 35 35 H 1.08997 * 109.57594 * 100.54196 * 19 12 2 36 36 H 1.09004 * 109.67781 * 340.21800 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0083 10 1 1.8268 -0.4197 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0197 -0.6925 1.1993 13 6 1.4729 -0.0751 2.4290 14 6 2.1837 -0.5674 3.6997 15 6 2.4537 -2.0505 3.6603 16 7 3.8067 -2.2666 3.1032 17 6 4.3782 -3.5317 3.5840 18 6 3.8687 -2.1867 1.7067 19 6 3.4619 -0.7930 1.1871 20 1 -0.3632 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.7083 1.1610 -3.4844 24 1 1.5837 1.0070 2.3597 25 1 0.4126 -0.3167 2.5036 26 1 3.1308 -0.0378 3.8034 27 1 1.5578 -0.3456 4.5640 28 1 1.7143 -2.5407 3.0269 29 1 2.4037 -2.4589 4.6697 30 1 5.4215 -3.5994 3.2760 31 1 4.3174 -3.5677 4.6717 32 1 3.8196 -4.3667 3.1610 33 1 4.8877 -2.4012 1.3846 34 1 3.1981 -2.9323 1.2793 35 1 3.8870 -0.0244 1.8325 36 1 3.8305 -0.6606 0.1699 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048246620.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:09 Heat of formation + Delta-G solvation = 15.265359 kcal Electronic energy + Delta-G solvation = -15198.359573 eV Core-core repulsion = 12910.708603 eV Total energy + Delta-G solvation = -2287.650970 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.89892 -35.95511 -33.04379 -31.79804 -29.79752 -27.29332 -25.86146 -24.79992 -23.68023 -20.75518 -20.13135 -18.76739 -16.35377 -15.81396 -15.01387 -14.84144 -14.58705 -14.03261 -13.55678 -13.02963 -12.68489 -12.62712 -12.12187 -11.71598 -11.41083 -11.12003 -11.00455 -10.81270 -10.66036 -10.60182 -10.36141 -10.21581 -10.04814 -9.88495 -9.55997 -8.83511 -8.39997 -7.82442 -6.98490 -5.98994 -4.03219 3.32908 3.37305 3.40158 4.36676 4.41895 5.01433 5.30422 5.32147 5.39384 5.52208 5.68584 5.74202 5.90717 5.98994 6.03073 6.14704 6.22334 6.29013 6.43655 6.50128 6.63696 6.70481 6.84451 6.95382 7.10289 7.18372 7.48823 7.57532 7.77155 7.85325 7.90315 8.33099 8.43268 8.68730 9.04433 9.61459 11.07551 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037842 B = 0.009584 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.731430 B = 2920.769868 C = 3478.137482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.217 3.783 3 H -0.004 1.004 4 C -0.503 4.503 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.549 5.549 13 C 0.062 3.938 14 C -0.118 4.118 15 C 0.073 3.927 16 N -0.557 5.557 17 C 0.032 3.968 18 C 0.075 3.925 19 C 0.070 3.930 20 H 0.083 0.917 21 H 0.032 0.968 22 H 0.007 0.993 23 H 0.260 0.740 24 H 0.021 0.979 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.020 0.980 33 H 0.059 0.941 34 H 0.030 0.970 35 H 0.029 0.971 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.453 -4.459 10.045 11.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.111 3.889 3 H 0.014 0.986 4 C -0.541 4.541 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.274 5.274 13 C -0.065 4.065 14 C -0.156 4.156 15 C -0.054 4.054 16 N -0.282 5.282 17 C -0.116 4.116 18 C -0.055 4.055 19 C -0.059 4.059 20 H 0.102 0.898 21 H 0.051 0.949 22 H 0.026 0.974 23 H 0.070 0.930 24 H 0.039 0.961 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.465 -4.418 10.029 11.494 hybrid contribution 0.062 -0.261 -1.151 1.182 sum 3.527 -4.679 8.878 10.637 Atomic orbital electron populations 1.21830 0.97943 0.99436 0.99833 1.19234 0.92200 0.91787 0.85652 0.98611 1.21124 1.30979 1.12230 0.89789 0.91964 1.24932 0.95253 0.95080 0.98979 1.69885 1.36859 1.23038 1.23470 0.86600 0.79100 0.79744 0.82182 1.20299 1.21391 1.20316 1.60824 1.08818 1.55555 1.02220 1.22317 0.98786 0.95690 0.89747 1.21449 1.00718 0.96283 0.97178 1.21698 0.88888 0.96707 0.98113 1.59338 1.22989 1.33684 1.12161 1.22293 0.99416 0.90028 0.99868 1.21055 0.99361 0.98942 0.86181 1.21808 0.88932 0.94033 1.01154 0.89819 0.94889 0.97412 0.92960 0.96071 0.91886 0.91488 0.92152 0.93006 0.92243 0.91990 0.92136 0.96101 0.92290 0.95219 0.95278 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.63 37.16 0.32 -2.97 16 2 C 0.22 5.55 2.02 -68.86 -0.14 5.41 16 3 H 0.00 -0.10 8.14 -51.93 -0.42 -0.53 16 4 C -0.50 -13.76 7.39 -34.44 -0.25 -14.01 16 5 H 0.06 1.70 6.96 -52.49 -0.37 1.33 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.61 11.32 55.43 0.63 -24.98 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 N -0.55 -12.00 3.83 -227.72 -0.87 -12.87 16 13 C 0.06 1.18 4.59 -2.82 -0.01 1.17 16 14 C -0.12 -1.84 5.36 -27.47 -0.15 -1.99 16 15 C 0.07 1.12 5.34 -4.37 -0.02 1.09 16 16 N -0.56 -8.82 4.32 -248.07 -1.07 -9.89 16 17 C 0.03 0.41 9.48 60.07 0.57 0.98 16 18 C 0.07 1.33 5.04 -6.75 -0.03 1.30 16 19 C 0.07 1.43 4.94 -4.44 -0.02 1.41 16 20 H 0.08 2.27 6.07 -51.93 -0.32 1.95 16 21 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 22 H 0.01 0.16 6.61 -51.93 -0.34 -0.19 16 23 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 24 H 0.02 0.41 8.03 -51.93 -0.42 0.00 16 25 H 0.06 1.18 6.94 -51.93 -0.36 0.82 16 26 H 0.07 1.09 7.23 -51.93 -0.38 0.71 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.90 7.57 -51.93 -0.39 0.51 16 29 H 0.06 0.77 7.69 -51.93 -0.40 0.37 16 30 H 0.06 0.73 8.05 -51.93 -0.42 0.31 16 31 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 32 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 34 H 0.03 0.59 8.06 -51.93 -0.42 0.17 16 35 H 0.03 0.58 6.93 -51.93 -0.36 0.22 16 36 H 0.09 2.05 6.00 -51.93 -0.31 1.74 16 LS Contribution 271.26 15.07 4.09 4.09 Total: -1.00 -28.26 271.26 -8.21 -36.47 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -6.12 Total: -3.10 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 0.16 Total: -6.08 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -1.32 Total: -47.75 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.26 -8.21 -36.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246620.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.735 kcal (2) G-P(sol) polarization free energy of solvation -28.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds