Wall clock time and date at job start Mon Mar 30 2020 03:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.50701 * 109.46826 * 239.99870 * 2 1 3 5 5 H 1.08002 * 120.00386 * 240.00255 * 4 2 1 6 6 C 1.37883 * 119.99808 * 60.00605 * 4 2 1 7 7 N 1.31508 * 119.99941 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99920 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47470 * 59.99694 * 8 6 4 10 10 H 1.48503 * 109.47124 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47300 * 299.99618 * 8 6 4 12 12 N 1.46894 * 109.47173 * 120.00348 * 2 1 3 13 13 C 1.48066 * 111.00096 * 303.73182 * 12 2 1 14 14 C 1.53696 * 112.47202 * 192.20066 * 13 12 2 15 15 C 1.50796 * 112.10112 * 318.54783 * 14 13 12 16 16 N 1.47913 * 108.49708 * 92.55156 * 15 14 13 17 17 C 1.46906 * 111.00084 * 153.79190 * 16 15 14 18 18 C 1.40014 * 114.06678 * 280.07998 * 16 15 14 19 19 C 1.44575 * 111.00137 * 176.04437 * 12 2 1 20 20 H 1.08995 * 109.46711 * 59.99585 * 1 2 3 21 21 H 1.08998 * 109.47387 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46785 * 299.99776 * 1 2 3 23 23 H 0.97004 * 120.00134 * 180.02562 * 7 6 4 24 24 H 1.09001 * 108.88109 * 312.96985 * 13 12 2 25 25 H 1.09004 * 108.88352 * 71.52712 * 13 12 2 26 26 H 1.08997 * 108.95782 * 79.22330 * 14 13 12 27 27 H 1.09001 * 108.95395 * 197.96536 * 14 13 12 28 28 H 1.09006 * 109.63599 * 332.85116 * 15 14 13 29 29 H 1.08998 * 109.63771 * 212.25689 * 15 14 13 30 30 H 1.08992 * 109.47459 * 187.96740 * 17 16 15 31 31 H 1.09004 * 109.47040 * 307.96891 * 17 16 15 32 32 H 1.09000 * 109.47033 * 67.96843 * 17 16 15 33 33 H 1.09003 * 108.95844 * 182.47750 * 18 16 15 34 34 H 1.09006 * 108.95542 * 301.21979 * 18 16 15 35 35 H 1.08997 * 109.57594 * 100.54196 * 19 12 2 36 36 H 1.09004 * 109.67781 * 340.21800 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0083 10 1 1.8268 -0.4197 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0197 -0.6925 1.1993 13 6 1.4729 -0.0751 2.4290 14 6 2.1837 -0.5674 3.6997 15 6 2.4537 -2.0505 3.6603 16 7 3.8067 -2.2666 3.1032 17 6 4.3782 -3.5317 3.5840 18 6 3.8687 -2.1867 1.7067 19 6 3.4619 -0.7930 1.1871 20 1 -0.3632 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.7083 1.1610 -3.4844 24 1 1.5837 1.0070 2.3597 25 1 0.4126 -0.3167 2.5036 26 1 3.1308 -0.0378 3.8034 27 1 1.5578 -0.3456 4.5640 28 1 1.7143 -2.5407 3.0269 29 1 2.4037 -2.4589 4.6697 30 1 5.4215 -3.5994 3.2760 31 1 4.3174 -3.5677 4.6717 32 1 3.8196 -4.3667 3.1610 33 1 4.8877 -2.4012 1.3846 34 1 3.1981 -2.9323 1.2793 35 1 3.8870 -0.0244 1.8325 36 1 3.8305 -0.6606 0.1699 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246620.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:09 Heat of formation + Delta-G solvation = -3.618321 kcal Electronic energy + Delta-G solvation = -15199.178431 eV Core-core repulsion = 12910.708603 eV Total energy + Delta-G solvation = -2288.469828 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.36348 -37.58189 -34.89491 -33.34504 -31.60394 -28.79268 -27.65705 -26.46360 -25.11407 -22.58206 -21.51017 -20.42277 -18.41601 -17.40538 -16.52674 -16.38992 -16.09223 -15.68014 -15.19386 -14.54823 -14.42849 -14.01396 -13.78592 -13.00932 -12.91910 -12.88229 -12.66109 -12.63299 -12.46381 -12.18861 -12.00947 -11.95417 -11.71548 -11.56608 -11.23197 -10.87033 -10.51339 -9.09492 -8.78141 -8.11097 -6.22660 1.41760 1.43539 1.51100 2.41811 3.12212 3.18401 3.36611 4.02157 4.16645 4.22753 4.40814 4.47836 4.58097 4.69445 4.73447 4.80987 4.84130 4.94448 4.98868 5.04810 5.05907 5.10100 5.12806 5.20083 5.29016 5.38888 5.50920 5.72640 5.82689 6.26658 6.31200 6.48593 6.52307 6.83676 6.95814 7.46183 8.94642 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037842 B = 0.009584 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.731430 B = 2920.769868 C = 3478.137482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.221 3.779 3 H -0.042 1.042 4 C -0.516 4.516 5 H 0.058 0.942 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.552 5.552 13 C 0.059 3.941 14 C -0.109 4.109 15 C 0.074 3.926 16 N -0.564 5.564 17 C 0.032 3.968 18 C 0.090 3.910 19 C 0.072 3.928 20 H 0.059 0.941 21 H 0.029 0.971 22 H 0.028 0.972 23 H 0.262 0.738 24 H 0.009 0.991 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.029 0.971 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.019 0.981 33 H 0.073 0.927 34 H 0.007 0.993 35 H 0.031 0.969 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 -5.715 11.400 13.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.114 3.886 3 H -0.025 1.025 4 C -0.554 4.554 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.277 5.277 13 C -0.068 4.068 14 C -0.147 4.147 15 C -0.053 4.053 16 N -0.289 5.289 17 C -0.115 4.115 18 C -0.040 4.040 19 C -0.057 4.057 20 H 0.077 0.923 21 H 0.048 0.952 22 H 0.047 0.953 23 H 0.071 0.929 24 H 0.028 0.972 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.048 0.952 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.038 0.962 33 H 0.091 0.909 34 H 0.025 0.975 35 H 0.049 0.951 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.170 -5.687 11.410 13.414 hybrid contribution -0.149 0.157 -1.507 1.523 sum 4.020 -5.530 9.903 12.034 Atomic orbital electron populations 1.21636 0.97486 0.98994 0.99631 1.19040 0.92524 0.89868 0.87140 1.02463 1.21362 1.31010 1.12169 0.90878 0.92394 1.25722 0.95416 0.95774 1.01914 1.70016 1.37757 1.24239 1.24102 0.85589 0.78804 0.78617 0.78491 1.19801 1.20953 1.19533 1.60832 1.09666 1.55057 1.02172 1.22436 0.99295 0.95009 0.90090 1.21409 1.00657 0.96487 0.96127 1.21746 0.88014 0.96202 0.99361 1.59347 1.23372 1.35618 1.10535 1.22378 0.99642 0.88261 1.01223 1.20806 0.99444 0.96114 0.87644 1.21767 0.88086 0.96036 0.99809 0.92259 0.95218 0.95317 0.92934 0.97223 0.91771 0.91912 0.88941 0.95211 0.88930 0.91007 0.89809 0.96250 0.90868 0.97455 0.95066 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.04 8.63 71.98 0.62 -5.42 16 2 C 0.22 11.63 2.02 44.17 0.09 11.72 16 3 H -0.04 -2.49 8.14 -2.39 -0.02 -2.51 16 4 C -0.52 -28.87 7.39 25.60 0.19 -28.68 16 5 H 0.06 3.22 6.96 -2.91 -0.02 3.20 16 6 C 0.01 0.57 5.30 84.66 0.45 1.02 16 7 N -0.92 -53.93 11.32 21.45 0.24 -53.69 16 8 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 N -0.55 -24.39 3.83 -874.36 -3.35 -27.74 16 13 C 0.06 2.20 4.59 86.31 0.40 2.59 16 14 C -0.11 -3.12 5.36 30.11 0.16 -2.96 16 15 C 0.07 2.05 5.34 85.39 0.46 2.51 16 16 N -0.56 -16.47 4.32 -938.74 -4.06 -20.53 16 17 C 0.03 0.72 9.48 127.69 1.21 1.93 16 18 C 0.09 3.14 5.04 87.95 0.44 3.59 16 19 C 0.07 2.98 4.94 87.15 0.43 3.41 16 20 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 21 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.03 1.28 6.61 -2.39 -0.02 1.26 16 23 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 24 H 0.01 0.37 8.03 -2.39 -0.02 0.35 16 25 H 0.06 2.35 6.94 -2.38 -0.02 2.33 16 26 H 0.06 1.88 7.23 -2.39 -0.02 1.87 16 27 H 0.09 2.09 8.14 -2.39 -0.02 2.08 16 28 H 0.03 0.97 7.57 -2.38 -0.02 0.96 16 29 H 0.09 2.00 7.69 -2.39 -0.02 1.98 16 30 H 0.07 1.46 8.05 -2.39 -0.02 1.44 16 31 H 0.08 1.50 7.87 -2.38 -0.02 1.48 16 32 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.07 2.31 7.95 -2.39 -0.02 2.29 16 34 H 0.01 0.29 8.06 -2.38 -0.02 0.27 16 35 H 0.03 1.25 6.93 -2.39 -0.02 1.24 16 36 H 0.06 2.93 6.00 -2.38 -0.01 2.92 16 Total: -1.00 -61.30 271.26 0.33 -60.97 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 1.03 Total: 5.08 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 4.45 Total: -10.30 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -7.16 Total: -101.96 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -61.30 0.33 -60.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246620.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.348 kcal (2) G-P(sol) polarization free energy of solvation -61.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds