Wall clock time and date at job start Mon Mar 30 2020 03:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47375 * 2 1 4 4 C 1.50704 * 109.47160 * 120.00097 * 2 1 3 5 5 H 1.07996 * 120.00061 * 116.51679 * 4 2 1 6 6 C 1.37879 * 120.00098 * 296.51826 * 4 2 1 7 7 N 1.31515 * 119.99868 * 156.32723 * 6 4 2 8 8 Si 1.86804 * 119.99700 * 336.59724 * 6 4 2 9 9 H 1.48499 * 109.47028 * 272.72342 * 8 6 4 10 10 H 1.48497 * 109.47058 * 32.72675 * 8 6 4 11 11 H 1.48498 * 109.46665 * 152.72269 * 8 6 4 12 12 N 1.46900 * 109.47183 * 239.99932 * 2 1 3 13 13 C 1.46900 * 110.99990 * 299.40415 * 12 2 1 14 14 C 1.46898 * 111.00008 * 175.44530 * 12 2 1 15 15 C 1.53117 * 109.52849 * 304.42339 * 14 12 2 16 16 C 1.53040 * 109.27794 * 182.50227 * 15 14 12 17 17 N 1.46850 * 109.57377 * 59.08481 * 16 15 14 18 18 C 1.46849 * 111.19691 * 298.28693 * 17 16 15 19 19 C 1.53041 * 109.51927 * 61.74513 * 18 17 16 20 20 H 1.09007 * 109.47183 * 298.04050 * 1 2 3 21 21 H 1.08997 * 109.47573 * 58.03795 * 1 2 3 22 22 H 1.09002 * 109.47322 * 178.03789 * 1 2 3 23 23 H 0.97003 * 119.99502 * 180.27721 * 7 6 4 24 24 H 1.09000 * 109.47284 * 64.12606 * 13 12 2 25 25 H 1.09003 * 109.46660 * 184.12702 * 13 12 2 26 26 H 1.08993 * 109.47273 * 304.12537 * 13 12 2 27 27 H 1.09005 * 109.52195 * 64.55170 * 14 12 2 28 28 H 1.09003 * 109.49821 * 302.38232 * 15 14 12 29 29 H 1.08998 * 109.50307 * 62.49628 * 15 14 12 30 30 H 1.08998 * 109.40757 * 299.07052 * 16 15 14 31 31 H 1.09001 * 109.45674 * 179.12304 * 16 15 14 32 32 H 1.00897 * 110.99866 * 62.38517 * 17 16 15 33 33 H 1.08998 * 109.46310 * 301.73081 * 18 17 16 34 34 H 1.08999 * 109.45536 * 181.75141 * 18 17 16 35 35 H 1.09008 * 109.49770 * 180.87733 * 19 18 17 36 36 H 1.08998 * 109.53675 * 60.78572 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6060 -1.6202 1.1324 6 6 1.7595 -0.1990 2.4815 7 7 1.7643 -0.9914 3.5312 8 14 1.3757 1.6179 2.6844 9 1 2.6413 2.3745 2.8603 10 1 0.6673 2.1120 1.4764 11 1 0.5133 1.8113 3.8777 12 7 2.0196 -0.6925 -1.1994 13 6 1.5603 -2.0876 -1.2262 14 6 3.4840 -0.6185 -1.2891 15 6 3.9260 0.8469 -1.2465 16 6 5.4466 0.9207 -1.4030 17 7 5.8403 0.3075 -2.6780 18 6 5.4686 -1.1125 -2.7214 19 6 3.9484 -1.2469 -2.6059 20 1 -0.3634 0.4831 0.9071 21 1 -0.3634 0.5440 -0.8718 22 1 -0.3634 -1.0271 -0.0352 23 1 1.5684 -0.6323 4.4107 24 1 0.4733 -2.1108 -1.3033 25 1 1.9965 -2.5972 -2.0854 26 1 1.8703 -2.5899 -0.3100 27 1 3.9279 -1.1573 -0.4519 28 1 3.4502 1.3941 -2.0604 29 1 3.6356 1.2870 -0.2926 30 1 5.9217 0.3858 -0.5807 31 1 5.7628 1.9638 -1.3888 32 1 5.4435 0.8092 -3.4583 33 1 5.9436 -1.6378 -1.8929 34 1 5.8008 -1.5460 -3.6647 35 1 3.6741 -2.3017 -2.6225 36 1 3.4726 -0.7340 -3.4417 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048247259.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:07 Heat of formation + Delta-G solvation = 5.072953 kcal Electronic energy + Delta-G solvation = -15336.566921 eV Core-core repulsion = 13048.473976 eV Total energy + Delta-G solvation = -2288.092946 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.97961 -36.23584 -32.64426 -30.89304 -30.52056 -28.63749 -25.51171 -24.68237 -22.69927 -21.87171 -20.07925 -18.94353 -16.71379 -15.95438 -15.08129 -14.53069 -14.34415 -13.84179 -13.79069 -12.96284 -12.77274 -12.58782 -12.20220 -12.02690 -11.75481 -11.50307 -11.16910 -10.98798 -10.83698 -10.56936 -10.49468 -10.14943 -10.01478 -9.75439 -9.57646 -9.34069 -8.42690 -8.15290 -7.10922 -6.19639 -4.08369 3.24806 3.34572 3.37829 4.38553 4.52297 4.86211 5.11715 5.26892 5.30951 5.48394 5.72219 5.74982 5.82603 5.97346 6.13899 6.20869 6.24688 6.33563 6.40532 6.43454 6.59385 6.63478 6.67649 6.74908 6.84747 6.91796 7.17334 7.25505 7.28109 7.57401 7.61869 8.13919 8.20426 8.42980 8.90824 9.51735 10.93306 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033529 B = 0.011023 C = 0.009794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.891927 B = 2539.561170 C = 2858.172870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.177 3.823 3 H 0.036 0.964 4 C -0.554 4.554 5 H 0.072 0.928 6 C 0.085 3.915 7 N -0.882 5.882 8 Si 0.857 3.143 9 H -0.278 1.278 10 H -0.257 1.257 11 H -0.289 1.289 12 N -0.532 5.532 13 C 0.027 3.973 14 C 0.095 3.905 15 C -0.147 4.147 16 C 0.057 3.943 17 N -0.688 5.688 18 C 0.059 3.941 19 C -0.151 4.151 20 H 0.044 0.956 21 H 0.027 0.973 22 H 0.047 0.953 23 H 0.263 0.737 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.336 0.664 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.675 2.038 -10.424 11.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.069 3.931 3 H 0.054 0.946 4 C -0.591 4.591 5 H 0.090 0.910 6 C -0.120 4.120 7 N -0.518 5.518 8 Si 0.683 3.317 9 H -0.204 1.204 10 H -0.181 1.181 11 H -0.215 1.215 12 N -0.255 5.255 13 C -0.122 4.122 14 C -0.014 4.014 15 C -0.186 4.186 16 C -0.073 4.073 17 N -0.316 5.316 18 C -0.072 4.072 19 C -0.190 4.190 20 H 0.063 0.937 21 H 0.046 0.954 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.153 0.847 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.102 2.128 -10.421 11.400 hybrid contribution -0.993 0.535 1.078 1.560 sum 3.109 2.663 -9.343 10.201 Atomic orbital electron populations 1.22076 0.98314 1.00259 0.98636 1.19632 0.91664 0.94674 0.87112 0.94610 1.21432 1.36378 1.11459 0.89876 0.91003 1.24881 0.93878 0.97265 0.95943 1.70094 1.47167 1.34703 0.99807 0.87238 0.78679 0.87600 0.78146 1.20409 1.18137 1.21463 1.62487 1.08543 1.13971 1.40545 1.22278 1.00019 0.90181 0.99694 1.21351 0.89432 0.95203 0.95413 1.22286 0.96126 0.97274 1.02951 1.22028 0.93981 0.99284 0.91975 1.60727 1.62863 1.03168 1.04850 1.21998 0.93691 0.89708 1.01767 1.22391 0.96627 1.01254 0.98740 0.93737 0.95388 0.93433 0.92733 0.92469 0.93654 0.94206 0.93298 0.92257 0.90480 0.90964 0.91154 0.84724 0.91178 0.91274 0.91813 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.50 37.16 0.32 -2.70 16 2 C 0.18 4.13 1.55 -68.87 -0.11 4.03 16 3 H 0.04 0.86 4.58 -51.93 -0.24 0.63 16 4 C -0.55 -14.97 7.44 -34.44 -0.26 -15.22 16 5 H 0.07 2.14 6.07 -52.49 -0.32 1.82 16 6 C 0.08 2.37 5.23 -17.82 -0.09 2.28 16 7 N -0.88 -26.33 13.96 55.43 0.77 -25.56 16 8 Si 0.86 20.90 26.00 -169.99 -4.42 16.48 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 10 H -0.26 -6.00 5.90 56.52 0.33 -5.67 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 N -0.53 -10.97 4.62 -228.15 -1.05 -12.02 16 13 C 0.03 0.53 8.70 60.06 0.52 1.05 16 14 C 0.10 1.78 1.68 -67.59 -0.11 1.66 16 15 C -0.15 -2.56 4.91 -26.65 -0.13 -2.69 16 16 C 0.06 0.85 6.55 -3.83 -0.03 0.83 16 17 N -0.69 -9.32 6.87 -113.81 -0.78 -10.10 16 18 C 0.06 0.79 6.55 -3.83 -0.03 0.76 16 19 C -0.15 -2.28 5.09 -26.65 -0.14 -2.42 16 20 H 0.04 1.02 5.48 -51.93 -0.28 0.74 16 21 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 1.05 6.40 -51.93 -0.33 0.71 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.06 1.09 6.50 -51.93 -0.34 0.76 16 25 H 0.04 0.77 5.99 -51.93 -0.31 0.46 16 26 H 0.04 0.88 6.24 -51.93 -0.32 0.56 16 27 H 0.05 1.07 6.97 -51.93 -0.36 0.70 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.08 1.53 6.40 -51.93 -0.33 1.20 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.34 4.10 8.86 -39.29 -0.35 3.75 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.96 6.39 -51.92 -0.33 0.62 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 262.95 15.07 3.96 3.96 Total: -1.00 -28.61 262.95 -7.25 -35.86 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.68 Total: 3.80 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -0.05 Total: -12.43 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -1.06 Total: -47.68 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.42 Total: 16.48 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.61 -7.25 -35.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247259.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.934 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds