Wall clock time and date at job start Mon Mar 30 2020 03:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47375 * 2 1 4 4 C 1.50704 * 109.47160 * 120.00097 * 2 1 3 5 5 H 1.07996 * 120.00061 * 116.51679 * 4 2 1 6 6 C 1.37879 * 120.00098 * 296.51826 * 4 2 1 7 7 N 1.31515 * 119.99868 * 156.32723 * 6 4 2 8 8 Si 1.86804 * 119.99700 * 336.59724 * 6 4 2 9 9 H 1.48499 * 109.47028 * 272.72342 * 8 6 4 10 10 H 1.48497 * 109.47058 * 32.72675 * 8 6 4 11 11 H 1.48498 * 109.46665 * 152.72269 * 8 6 4 12 12 N 1.46900 * 109.47183 * 239.99932 * 2 1 3 13 13 C 1.46900 * 110.99990 * 299.40415 * 12 2 1 14 14 C 1.46898 * 111.00008 * 175.44530 * 12 2 1 15 15 C 1.53117 * 109.52849 * 304.42339 * 14 12 2 16 16 C 1.53040 * 109.27794 * 182.50227 * 15 14 12 17 17 N 1.46850 * 109.57377 * 59.08481 * 16 15 14 18 18 C 1.46849 * 111.19691 * 298.28693 * 17 16 15 19 19 C 1.53041 * 109.51927 * 61.74513 * 18 17 16 20 20 H 1.09007 * 109.47183 * 298.04050 * 1 2 3 21 21 H 1.08997 * 109.47573 * 58.03795 * 1 2 3 22 22 H 1.09002 * 109.47322 * 178.03789 * 1 2 3 23 23 H 0.97003 * 119.99502 * 180.27721 * 7 6 4 24 24 H 1.09000 * 109.47284 * 64.12606 * 13 12 2 25 25 H 1.09003 * 109.46660 * 184.12702 * 13 12 2 26 26 H 1.08993 * 109.47273 * 304.12537 * 13 12 2 27 27 H 1.09005 * 109.52195 * 64.55170 * 14 12 2 28 28 H 1.09003 * 109.49821 * 302.38232 * 15 14 12 29 29 H 1.08998 * 109.50307 * 62.49628 * 15 14 12 30 30 H 1.08998 * 109.40757 * 299.07052 * 16 15 14 31 31 H 1.09001 * 109.45674 * 179.12304 * 16 15 14 32 32 H 1.00897 * 110.99866 * 62.38517 * 17 16 15 33 33 H 1.08998 * 109.46310 * 301.73081 * 18 17 16 34 34 H 1.08999 * 109.45536 * 181.75141 * 18 17 16 35 35 H 1.09008 * 109.49770 * 180.87733 * 19 18 17 36 36 H 1.08998 * 109.53675 * 60.78572 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6060 -1.6202 1.1324 6 6 1.7595 -0.1990 2.4815 7 7 1.7643 -0.9914 3.5312 8 14 1.3757 1.6179 2.6844 9 1 2.6413 2.3745 2.8603 10 1 0.6673 2.1120 1.4764 11 1 0.5133 1.8113 3.8777 12 7 2.0196 -0.6925 -1.1994 13 6 1.5603 -2.0876 -1.2262 14 6 3.4840 -0.6185 -1.2891 15 6 3.9260 0.8469 -1.2465 16 6 5.4466 0.9207 -1.4030 17 7 5.8403 0.3075 -2.6780 18 6 5.4686 -1.1125 -2.7214 19 6 3.9484 -1.2469 -2.6059 20 1 -0.3634 0.4831 0.9071 21 1 -0.3634 0.5440 -0.8718 22 1 -0.3634 -1.0271 -0.0352 23 1 1.5684 -0.6323 4.4107 24 1 0.4733 -2.1108 -1.3033 25 1 1.9965 -2.5972 -2.0854 26 1 1.8703 -2.5899 -0.3100 27 1 3.9279 -1.1573 -0.4519 28 1 3.4502 1.3941 -2.0604 29 1 3.6356 1.2870 -0.2926 30 1 5.9217 0.3858 -0.5807 31 1 5.7628 1.9638 -1.3888 32 1 5.4435 0.8092 -3.4583 33 1 5.9436 -1.6378 -1.8929 34 1 5.8008 -1.5460 -3.6647 35 1 3.6741 -2.3017 -2.6225 36 1 3.4726 -0.7340 -3.4417 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048247259.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:07 Heat of formation + Delta-G solvation = -17.019000 kcal Electronic energy + Delta-G solvation = -15337.524900 eV Core-core repulsion = 13048.473976 eV Total energy + Delta-G solvation = -2289.050925 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.42375 -37.77339 -34.64537 -32.54119 -31.84420 -30.21670 -27.32459 -26.51722 -24.03039 -23.23002 -21.56247 -20.72328 -18.70389 -17.41055 -16.63507 -16.37084 -15.57854 -15.48515 -15.21793 -14.66446 -14.52123 -14.25733 -13.83130 -13.45621 -13.26506 -13.03146 -12.77027 -12.68436 -12.50667 -12.21022 -12.01290 -11.85334 -11.57243 -11.51617 -11.45330 -10.94742 -10.54824 -9.32618 -8.90887 -8.37362 -6.29021 1.30281 1.34814 1.43590 2.32279 2.96914 3.21481 3.50586 3.92065 4.01645 4.24901 4.34620 4.48679 4.51451 4.55122 4.65373 4.75502 4.80761 4.87167 4.95290 4.97065 5.01360 5.07359 5.13306 5.16755 5.28358 5.33329 5.40241 5.52443 5.61124 6.06373 6.18980 6.38753 6.50159 6.58550 6.74720 7.33950 8.79452 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033529 B = 0.011023 C = 0.009794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.891927 B = 2539.561170 C = 2858.172870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.178 3.822 3 H 0.037 0.963 4 C -0.546 4.546 5 H 0.029 0.971 6 C 0.029 3.971 7 N -0.932 5.932 8 Si 0.919 3.081 9 H -0.273 1.273 10 H -0.235 1.235 11 H -0.288 1.288 12 N -0.526 5.526 13 C 0.032 3.968 14 C 0.091 3.909 15 C -0.142 4.142 16 C 0.065 3.935 17 N -0.682 5.682 18 C 0.063 3.937 19 C -0.139 4.139 20 H 0.035 0.965 21 H 0.054 0.946 22 H 0.043 0.957 23 H 0.264 0.736 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.002 0.998 27 H 0.006 0.994 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.349 0.651 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.674 3.593 -12.854 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.070 3.930 3 H 0.055 0.945 4 C -0.584 4.584 5 H 0.047 0.953 6 C -0.171 4.171 7 N -0.570 5.570 8 Si 0.743 3.257 9 H -0.199 1.199 10 H -0.158 1.158 11 H -0.214 1.214 12 N -0.249 5.249 13 C -0.117 4.117 14 C -0.017 4.017 15 C -0.181 4.181 16 C -0.066 4.066 17 N -0.311 5.311 18 C -0.068 4.068 19 C -0.179 4.179 20 H 0.054 0.946 21 H 0.073 0.927 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.021 0.979 27 H 0.024 0.976 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.168 0.832 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.105 3.690 -12.888 14.020 hybrid contribution -0.948 -0.057 1.799 2.035 sum 3.157 3.633 -11.089 12.088 Atomic orbital electron populations 1.22003 0.97132 1.00440 0.99445 1.19564 0.92517 0.94473 0.86461 0.94483 1.21616 1.35116 1.09981 0.91697 0.95284 1.25695 0.94238 1.01581 0.95589 1.70214 1.49571 1.36803 1.00440 0.86233 0.78801 0.81851 0.78809 1.19891 1.15815 1.21412 1.62556 1.09793 1.14108 1.38414 1.22269 1.00567 0.89666 0.99156 1.21461 0.88001 0.96199 0.96087 1.22252 0.98111 0.95984 1.01798 1.21939 0.91903 1.00405 0.92318 1.60705 1.62619 1.03206 1.04531 1.22014 0.92176 0.89783 1.02794 1.22315 0.97958 1.01025 0.96576 0.94567 0.92674 0.93824 0.92681 0.91857 0.90598 0.97927 0.97568 0.90885 0.93404 0.92742 0.89122 0.83218 0.92532 0.88302 0.91673 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 8.50 71.98 0.61 -5.09 16 2 C 0.18 8.25 1.55 44.17 0.07 8.32 16 3 H 0.04 1.74 4.58 -2.39 -0.01 1.73 16 4 C -0.55 -30.47 7.44 25.60 0.19 -30.28 16 5 H 0.03 1.84 6.07 -2.91 -0.02 1.82 16 6 C 0.03 1.64 5.23 84.66 0.44 2.09 16 7 N -0.93 -57.64 13.96 21.45 0.30 -57.34 16 8 Si 0.92 43.29 26.00 68.60 1.78 45.07 16 9 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.24 -10.16 5.90 99.48 0.59 -9.58 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 12 N -0.53 -21.25 4.62 -875.74 -4.05 -25.29 16 13 C 0.03 1.24 8.70 127.69 1.11 2.35 16 14 C 0.09 3.38 1.68 44.99 0.08 3.46 16 15 C -0.14 -4.77 4.91 30.65 0.15 -4.62 16 16 C 0.06 1.83 6.55 86.33 0.57 2.39 16 17 N -0.68 -16.49 6.87 -513.98 -3.53 -20.02 16 18 C 0.06 1.53 6.55 86.33 0.57 2.09 16 19 C -0.14 -3.91 5.09 30.65 0.16 -3.75 16 20 H 0.04 1.59 5.48 -2.38 -0.01 1.58 16 21 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 22 H 0.04 1.88 6.40 -2.39 -0.02 1.86 16 23 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 24 H 0.06 2.36 6.50 -2.39 -0.02 2.35 16 25 H 0.08 2.46 5.99 -2.39 -0.01 2.45 16 26 H 0.00 0.10 6.24 -2.39 -0.01 0.08 16 27 H 0.01 0.28 6.97 -2.38 -0.02 0.27 16 28 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.05 1.88 6.40 -2.39 -0.02 1.86 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.35 7.14 8.86 -89.70 -0.79 6.35 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.06 1.81 6.39 -2.38 -0.02 1.80 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -63.17 262.95 -1.41 -64.58 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.15 Total: 16.06 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 3.94 Total: -23.05 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -7.28 Total: -102.65 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.78 Total: 45.07 kcal Total: -63.17 -1.41 -64.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247259.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.558 kcal (2) G-P(sol) polarization free energy of solvation -63.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds