Wall clock time and date at job start Mon Mar 30 2020 03:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46898 * 111.00052 * 176.04736 * 12 2 1 14 14 C 1.46898 * 110.99498 * 299.99832 * 12 2 1 15 15 C 1.53119 * 109.52623 * 294.87131 * 14 12 2 16 16 C 1.53040 * 109.27932 * 182.50619 * 15 14 12 17 17 N 1.46847 * 109.57547 * 59.08309 * 16 15 14 18 18 C 1.46853 * 111.19919 * 298.29191 * 17 16 15 19 19 C 1.53036 * 109.52210 * 61.73845 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 24 24 H 1.08994 * 109.47157 * 59.99647 * 13 12 2 25 25 H 1.09005 * 109.46959 * 179.97438 * 13 12 2 26 26 H 1.09004 * 109.46870 * 299.99082 * 13 12 2 27 27 H 1.08997 * 109.52401 * 54.99964 * 14 12 2 28 28 H 1.09007 * 109.50068 * 302.38521 * 15 14 12 29 29 H 1.09005 * 109.50374 * 62.50091 * 15 14 12 30 30 H 1.08999 * 109.40954 * 299.07028 * 16 15 14 31 31 H 1.09000 * 109.46509 * 179.13483 * 16 15 14 32 32 H 1.00899 * 111.00174 * 62.38435 * 17 16 15 33 33 H 1.08995 * 109.46079 * 301.72668 * 18 17 16 34 34 H 1.08994 * 109.45121 * 181.75205 * 18 17 16 35 35 H 1.08997 * 109.50561 * 180.87567 * 19 18 17 36 36 H 1.09000 * 109.53208 * 60.78366 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0264 2.4210 15 6 2.1622 1.3737 2.5095 16 6 1.7178 2.0386 3.8143 17 7 2.1498 1.2211 4.9551 18 6 1.5347 -0.1119 4.9164 19 6 1.9748 -0.8415 3.6452 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7089 1.1613 -3.4844 24 1 3.9186 0.2051 1.1591 25 1 3.8210 -1.3109 2.0863 26 1 3.8029 -1.3533 0.3067 27 1 0.4619 0.0531 2.3967 28 1 3.2494 1.2963 2.4934 29 1 1.8269 1.9722 1.6624 30 1 0.6316 2.1292 3.8231 31 1 2.1653 3.0298 3.8877 32 1 3.1559 1.1540 4.9915 33 1 0.4494 -0.0112 4.9199 34 1 1.8494 -0.6824 5.7901 35 1 1.5058 -1.8247 3.6090 36 1 3.0589 -0.9553 3.6472 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048247262.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:10 Heat of formation + Delta-G solvation = 2.740797 kcal Electronic energy + Delta-G solvation = -15190.491079 eV Core-core repulsion = 12902.297003 eV Total energy + Delta-G solvation = -2288.194076 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.19285 -35.99587 -32.86638 -30.67047 -29.94658 -28.84945 -25.50372 -24.23693 -22.85102 -22.29139 -20.33682 -18.66732 -16.31983 -15.74144 -15.28137 -14.53561 -14.45119 -13.92699 -13.49496 -13.46956 -12.64695 -12.58894 -12.03802 -11.85263 -11.81210 -11.18903 -11.09281 -10.94383 -10.79673 -10.64774 -10.24594 -10.20824 -10.04013 -9.96851 -9.63765 -8.84715 -8.45032 -8.21325 -7.08190 -6.01385 -4.05658 3.29977 3.36279 3.39324 4.39140 4.47025 4.92806 5.08849 5.28069 5.30874 5.41158 5.61352 5.65028 5.71866 5.83682 6.07360 6.11793 6.19502 6.27205 6.32409 6.37892 6.53172 6.67799 6.79233 6.89794 7.06196 7.16309 7.17722 7.47335 7.54617 7.74957 7.83291 8.22289 8.33784 8.62803 9.01098 9.59289 11.05351 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055630 B = 0.008082 C = 0.007722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.207647 B = 3463.811818 C = 3624.935202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.211 3.789 3 H 0.002 0.998 4 C -0.504 4.504 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.531 5.531 13 C 0.034 3.966 14 C 0.083 3.917 15 C -0.190 4.190 16 C 0.061 3.939 17 N -0.688 5.688 18 C 0.058 3.942 19 C -0.149 4.149 20 H 0.084 0.916 21 H 0.007 0.993 22 H 0.033 0.967 23 H 0.260 0.740 24 H 0.013 0.987 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.336 0.664 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.059 -0.036 10.801 10.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.105 3.895 3 H 0.019 0.981 4 C -0.542 4.542 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.255 5.255 13 C -0.114 4.114 14 C -0.026 4.026 15 C -0.231 4.231 16 C -0.069 4.069 17 N -0.316 5.316 18 C -0.073 4.073 19 C -0.189 4.189 20 H 0.103 0.897 21 H 0.026 0.974 22 H 0.052 0.948 23 H 0.070 0.930 24 H 0.031 0.969 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.153 0.847 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.301 -0.140 11.065 11.142 hybrid contribution 1.135 -0.015 -1.766 2.099 sum 2.436 -0.155 9.299 9.614 Atomic orbital electron populations 1.21838 0.97906 0.99525 0.99781 1.19247 0.92172 0.92208 0.85849 0.98062 1.21185 1.30954 1.12215 0.89888 0.91984 1.24933 0.95260 0.95082 0.99005 1.69894 1.37034 1.23016 1.23358 0.86532 0.79206 0.79311 0.82553 1.20663 1.21338 1.19994 1.62358 1.09046 1.51902 1.02146 1.22248 0.89352 0.98975 1.00850 1.21708 0.99851 0.90305 0.90752 1.22927 1.01203 0.99673 0.99296 1.21958 1.00840 0.96130 0.87996 1.60746 1.13132 1.14476 1.43267 1.22013 0.99883 0.88817 0.96545 1.22357 1.01222 1.00131 0.95177 0.89734 0.97401 0.94823 0.93023 0.96871 0.93849 0.90896 0.90262 0.92173 0.90832 0.91169 0.91374 0.84731 0.91127 0.91168 0.91132 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.75 37.16 0.32 -2.94 16 2 C 0.21 5.32 1.78 -68.86 -0.12 5.20 16 3 H 0.00 0.05 6.50 -51.93 -0.34 -0.29 16 4 C -0.50 -13.88 7.93 -34.44 -0.27 -14.15 16 5 H 0.06 1.71 6.39 -52.49 -0.34 1.37 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.57 11.32 55.43 0.63 -24.95 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.53 -11.43 4.61 -228.14 -1.05 -12.49 16 13 C 0.03 0.68 8.44 60.06 0.51 1.19 16 14 C 0.08 1.50 2.03 -67.59 -0.14 1.36 16 15 C -0.19 -3.20 4.67 -26.65 -0.12 -3.32 16 16 C 0.06 0.85 6.55 -3.83 -0.03 0.83 16 17 N -0.69 -8.89 6.87 -113.82 -0.78 -9.67 16 18 C 0.06 0.73 6.55 -3.83 -0.03 0.70 16 19 C -0.15 -2.21 5.23 -26.65 -0.14 -2.35 16 20 H 0.08 2.28 6.07 -51.93 -0.32 1.97 16 21 H 0.01 0.16 6.30 -51.93 -0.33 -0.17 16 22 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.01 0.26 6.46 -51.93 -0.34 -0.08 16 25 H 0.04 0.74 6.08 -51.93 -0.32 0.43 16 26 H 0.07 1.56 6.23 -51.93 -0.32 1.24 16 27 H 0.08 1.52 6.05 -51.93 -0.31 1.20 16 28 H 0.06 1.02 6.35 -51.93 -0.33 0.69 16 29 H 0.07 1.42 6.66 -51.93 -0.35 1.08 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.34 4.01 8.86 -39.29 -0.35 3.66 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.88 6.22 -51.93 -0.32 0.56 16 LS Contribution 266.23 15.07 4.01 4.01 Total: -1.00 -28.15 266.23 -7.95 -36.10 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.62 Total: 2.54 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.11 Total: -11.96 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -1.21 Total: -47.11 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.15 -7.95 -36.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247262.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.838 kcal (2) G-P(sol) polarization free energy of solvation -28.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds