Wall clock time and date at job start Mon Mar 30 2020 03:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46898 * 111.00052 * 176.04736 * 12 2 1 14 14 C 1.46898 * 110.99498 * 299.99832 * 12 2 1 15 15 C 1.53119 * 109.52623 * 294.87131 * 14 12 2 16 16 C 1.53040 * 109.27932 * 182.50619 * 15 14 12 17 17 N 1.46847 * 109.57547 * 59.08309 * 16 15 14 18 18 C 1.46853 * 111.19919 * 298.29191 * 17 16 15 19 19 C 1.53036 * 109.52210 * 61.73845 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 24 24 H 1.08994 * 109.47157 * 59.99647 * 13 12 2 25 25 H 1.09005 * 109.46959 * 179.97438 * 13 12 2 26 26 H 1.09004 * 109.46870 * 299.99082 * 13 12 2 27 27 H 1.08997 * 109.52401 * 54.99964 * 14 12 2 28 28 H 1.09007 * 109.50068 * 302.38521 * 15 14 12 29 29 H 1.09005 * 109.50374 * 62.50091 * 15 14 12 30 30 H 1.08999 * 109.40954 * 299.07028 * 16 15 14 31 31 H 1.09000 * 109.46509 * 179.13483 * 16 15 14 32 32 H 1.00899 * 111.00174 * 62.38435 * 17 16 15 33 33 H 1.08995 * 109.46079 * 301.72668 * 18 17 16 34 34 H 1.08994 * 109.45121 * 181.75205 * 18 17 16 35 35 H 1.08997 * 109.50561 * 180.87567 * 19 18 17 36 36 H 1.09000 * 109.53208 * 60.78366 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0264 2.4210 15 6 2.1622 1.3737 2.5095 16 6 1.7178 2.0386 3.8143 17 7 2.1498 1.2211 4.9551 18 6 1.5347 -0.1119 4.9164 19 6 1.9748 -0.8415 3.6452 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7089 1.1613 -3.4844 24 1 3.9186 0.2051 1.1591 25 1 3.8210 -1.3109 2.0863 26 1 3.8029 -1.3533 0.3067 27 1 0.4619 0.0531 2.3967 28 1 3.2494 1.2963 2.4934 29 1 1.8269 1.9722 1.6624 30 1 0.6316 2.1292 3.8231 31 1 2.1653 3.0298 3.8877 32 1 3.1559 1.1540 4.9915 33 1 0.4494 -0.0112 4.9199 34 1 1.8494 -0.6824 5.7901 35 1 1.5058 -1.8247 3.6090 36 1 3.0589 -0.9553 3.6472 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048247262.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:10 Heat of formation + Delta-G solvation = -17.603822 kcal Electronic energy + Delta-G solvation = -15191.373288 eV Core-core repulsion = 12902.297003 eV Total energy + Delta-G solvation = -2289.076285 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.59989 -37.53423 -34.81209 -31.98599 -31.52492 -30.53479 -27.43811 -25.99127 -24.18615 -23.61923 -21.88912 -20.24310 -18.37029 -17.18466 -16.88294 -16.22082 -15.68951 -15.35976 -15.18075 -15.05110 -14.29865 -13.93346 -13.68488 -13.48489 -13.07037 -12.97271 -12.76070 -12.61306 -12.45403 -12.24711 -12.05549 -11.96924 -11.79931 -11.54116 -11.11812 -10.84936 -10.53289 -9.37421 -8.81597 -8.13057 -6.24873 1.39767 1.40638 1.50614 2.40150 3.14495 3.30764 3.49261 3.79724 4.01633 4.19187 4.32570 4.38793 4.45824 4.55781 4.72868 4.74185 4.81961 4.85637 4.97445 5.01223 5.05173 5.05927 5.12881 5.19879 5.30056 5.38462 5.51889 5.72380 5.79522 6.06669 6.24857 6.40991 6.49422 6.77651 6.91108 7.44414 8.92698 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055630 B = 0.008082 C = 0.007722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.207647 B = 3463.811818 C = 3624.935202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.218 3.782 3 H -0.031 1.031 4 C -0.522 4.522 5 H 0.057 0.943 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.269 1.269 12 N -0.541 5.541 13 C 0.040 3.960 14 C 0.080 3.920 15 C -0.181 4.181 16 C 0.070 3.930 17 N -0.683 5.683 18 C 0.063 3.937 19 C -0.139 4.139 20 H 0.058 0.942 21 H 0.026 0.974 22 H 0.027 0.973 23 H 0.261 0.739 24 H 0.008 0.992 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.345 0.655 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.715 -0.730 12.202 12.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.111 3.889 3 H -0.013 1.013 4 C -0.560 4.560 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.264 5.264 13 C -0.108 4.108 14 C -0.029 4.029 15 C -0.222 4.222 16 C -0.061 4.061 17 N -0.311 5.311 18 C -0.067 4.067 19 C -0.179 4.179 20 H 0.077 0.923 21 H 0.045 0.955 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.026 0.974 25 H 0.094 0.906 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.163 0.837 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.967 -0.840 12.492 12.674 hybrid contribution 0.930 0.211 -2.156 2.357 sum 2.897 -0.629 10.337 10.753 Atomic orbital electron populations 1.21646 0.97780 0.98905 0.99457 1.18996 0.92215 0.90546 0.87147 1.01317 1.21485 1.31080 1.12245 0.91188 0.92443 1.25722 0.95425 0.95774 1.01928 1.70023 1.37860 1.24173 1.24000 0.85535 0.78843 0.78240 0.78888 1.20147 1.20910 1.19331 1.62287 1.10030 1.51909 1.02162 1.22205 0.88371 0.98734 1.01509 1.21806 0.99042 0.91465 0.90604 1.22822 1.00863 0.98723 0.99770 1.21878 1.00796 0.96726 0.86667 1.60752 1.13903 1.14470 1.41973 1.22042 0.99897 0.88568 0.96199 1.22297 1.01460 0.99712 0.94386 0.92279 0.95467 0.95350 0.92975 0.97398 0.90604 0.92857 0.91694 0.92266 0.94198 0.91389 0.90018 0.83712 0.91235 0.88517 0.91165 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.04 8.75 71.98 0.63 -5.41 16 2 C 0.22 11.25 1.78 44.17 0.08 11.33 16 3 H -0.03 -1.75 6.50 -2.39 -0.02 -1.77 16 4 C -0.52 -29.20 7.93 25.60 0.20 -29.00 16 5 H 0.06 3.20 6.39 -2.91 -0.02 3.18 16 6 C 0.01 0.56 5.30 84.65 0.45 1.01 16 7 N -0.92 -53.75 11.32 21.45 0.24 -53.51 16 8 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 N -0.54 -23.23 4.61 -875.71 -4.04 -27.27 16 13 C 0.04 1.57 8.44 127.69 1.08 2.64 16 14 C 0.08 2.80 2.03 45.00 0.09 2.89 16 15 C -0.18 -6.00 4.67 30.65 0.14 -5.86 16 16 C 0.07 1.83 6.55 86.33 0.57 2.39 16 17 N -0.68 -15.52 6.87 -514.00 -3.53 -19.05 16 18 C 0.06 1.39 6.55 86.32 0.57 1.95 16 19 C -0.14 -3.76 5.23 30.65 0.16 -3.60 16 20 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 21 H 0.03 1.21 6.30 -2.39 -0.02 1.20 16 22 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 23 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 24 H 0.01 0.30 6.46 -2.39 -0.02 0.29 16 25 H 0.08 2.45 6.08 -2.38 -0.01 2.43 16 26 H 0.05 2.28 6.23 -2.39 -0.01 2.26 16 27 H 0.06 2.46 6.05 -2.39 -0.01 2.44 16 28 H 0.06 1.95 6.35 -2.38 -0.02 1.94 16 29 H 0.04 1.58 6.66 -2.38 -0.02 1.57 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.35 7.04 8.86 -89.70 -0.79 6.25 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.70 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 1.72 6.22 -2.39 -0.01 1.70 16 Total: -1.00 -60.55 266.23 -1.07 -61.62 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.27 Total: 13.60 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: 3.96 Total: -21.64 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -7.33 Total: -99.83 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -60.55 -1.07 -61.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247262.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.015 kcal (2) G-P(sol) polarization free energy of solvation -60.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds