Wall clock time and date at job start Mon Mar 30 2020 03:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46906 * 111.00020 * 2 1 4 4 H 1.08999 * 109.49922 * 324.91985 * 3 2 1 5 5 C 1.53119 * 109.50136 * 84.99526 * 3 2 1 6 6 C 1.53124 * 109.15796 * 177.63397 * 5 3 2 7 7 C 1.53037 * 109.28148 * 302.35024 * 6 5 3 8 8 N 1.46844 * 109.52152 * 59.17731 * 7 6 5 9 9 C 1.46906 * 110.99887 * 174.16043 * 8 7 6 10 10 H 1.08998 * 109.47121 * 186.04358 * 9 8 7 11 11 C 1.53000 * 109.47029 * 306.04766 * 9 8 7 12 12 C 1.50706 * 109.46929 * 66.04691 * 9 8 7 13 13 H 1.07998 * 119.99628 * 0.02562 * 12 9 8 14 14 C 1.37871 * 119.99847 * 179.97438 * 12 9 8 15 15 N 1.31523 * 120.00067 * 0.02562 * 14 12 9 16 16 Si 1.86794 * 119.99964 * 179.97438 * 14 12 9 17 17 H 1.48507 * 109.46747 * 90.00527 * 16 14 12 18 18 H 1.48504 * 109.47496 * 210.00106 * 16 14 12 19 19 H 1.48500 * 109.47352 * 330.00459 * 16 14 12 20 20 C 1.46850 * 111.19991 * 298.25708 * 8 7 6 21 21 H 1.09002 * 109.46848 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47271 * 300.00076 * 1 2 3 23 23 H 1.09002 * 109.47478 * 60.00454 * 1 2 3 24 24 H 1.00898 * 110.99924 * 123.94919 * 2 1 3 25 25 H 1.09001 * 109.51997 * 57.73586 * 5 3 2 26 26 H 1.08995 * 109.57988 * 297.57383 * 5 3 2 27 27 H 1.08997 * 109.50392 * 182.40446 * 6 5 3 28 28 H 1.09008 * 109.53016 * 62.31007 * 6 5 3 29 29 H 1.08995 * 109.46089 * 299.16330 * 7 6 5 30 30 H 1.08993 * 109.46053 * 179.19513 * 7 6 5 31 31 H 1.08998 * 109.47056 * 60.00115 * 11 9 8 32 32 H 1.09002 * 109.46786 * 180.02562 * 11 9 8 33 33 H 1.08999 * 109.46789 * 299.99921 * 11 9 8 34 34 H 0.96995 * 119.99723 * 180.02562 * 15 14 12 35 35 H 1.09005 * 109.46314 * 181.76064 * 20 8 7 36 36 H 1.08998 * 109.46244 * 301.72632 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3408 2.0125 -0.5905 5 6 2.0610 1.8938 1.4379 6 6 2.6656 3.3006 1.4343 7 6 4.0517 3.2534 0.7873 8 7 3.9349 2.7479 -0.5865 9 6 5.2253 2.8190 -1.2850 10 1 5.0887 2.5404 -2.3299 11 6 5.7708 4.2462 -1.2047 12 6 6.2007 1.8711 -0.6359 13 1 5.8927 1.2753 0.2106 14 6 7.4860 1.7639 -1.1233 15 7 7.8609 2.4892 -2.1544 16 14 8.6952 0.5896 -0.3183 17 1 8.6022 -0.7410 -0.9711 18 1 10.0744 1.1193 -0.4685 19 1 8.3704 0.4569 1.1247 20 6 3.4009 1.3801 -0.6054 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8305 -0.5261 0.7814 25 1 2.6844 1.2310 2.0380 26 1 1.0566 1.9300 1.8595 27 1 2.7545 3.6611 2.4591 28 1 2.0217 3.9726 0.8667 29 1 4.6991 2.5926 1.3636 30 1 4.4788 4.2560 0.7703 31 1 5.9075 4.5247 -0.1598 32 1 6.7280 4.2990 -1.7234 33 1 5.0652 4.9317 -1.6742 34 1 8.7650 2.4135 -2.4975 35 1 3.3554 1.0222 -1.6340 36 1 4.0514 0.7281 -0.0226 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053204541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:03 Heat of formation + Delta-G solvation = -1.334872 kcal Electronic energy + Delta-G solvation = -15074.777312 eV Core-core repulsion = 12786.406502 eV Total energy + Delta-G solvation = -2288.370810 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.73009 -35.73930 -33.30900 -31.53824 -29.56752 -27.98049 -25.24432 -24.58284 -23.16745 -21.74466 -19.94413 -19.02734 -16.19121 -15.76740 -15.02577 -14.42102 -14.32513 -13.94084 -13.53225 -13.17492 -12.86656 -12.50357 -12.40462 -11.90702 -11.52418 -11.26796 -11.01521 -10.87249 -10.70789 -10.47766 -10.32779 -10.22858 -9.98329 -9.69671 -9.44044 -9.15432 -8.35630 -8.14327 -7.06908 -5.94863 -4.07720 3.29147 3.36034 3.38691 4.37773 4.43234 5.08168 5.24807 5.30456 5.37807 5.44238 5.51972 5.56763 5.84697 5.93133 6.00179 6.13947 6.25519 6.29707 6.38155 6.57086 6.72853 6.80532 6.90730 7.00775 7.08893 7.22141 7.30186 7.58336 7.64960 7.75968 8.03033 8.20720 8.41399 8.49980 9.02157 9.59688 11.04924 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034142 B = 0.009255 C = 0.008352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.910898 B = 3024.764374 C = 3351.492775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.690 5.690 3 C 0.088 3.912 4 H 0.078 0.922 5 C -0.144 4.144 6 C -0.113 4.113 7 C 0.057 3.943 8 N -0.538 5.538 9 C 0.208 3.792 10 H 0.040 0.960 11 C -0.134 4.134 12 C -0.539 4.539 13 H 0.055 0.945 14 C 0.067 3.933 15 N -0.888 5.888 16 Si 0.887 3.113 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.080 3.920 21 H 0.061 0.939 22 H 0.017 0.983 23 H 0.062 0.938 24 H 0.338 0.662 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.084 0.916 33 H 0.014 0.986 34 H 0.260 0.740 35 H 0.069 0.931 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.460 -1.115 5.724 11.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.320 5.320 3 C -0.022 4.022 4 H 0.096 0.904 5 C -0.184 4.184 6 C -0.151 4.151 7 C -0.071 4.071 8 N -0.263 5.263 9 C 0.102 3.898 10 H 0.058 0.942 11 C -0.192 4.192 12 C -0.578 4.578 13 H 0.073 0.927 14 C -0.135 4.135 15 N -0.526 5.526 16 Si 0.715 3.285 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.049 4.049 21 H 0.080 0.920 22 H 0.035 0.965 23 H 0.081 0.919 24 H 0.155 0.845 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.102 0.898 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.585 -0.852 4.646 11.591 hybrid contribution 1.160 -0.960 1.847 2.383 sum -9.425 -1.812 6.494 11.588 Atomic orbital electron populations 1.22168 0.88492 1.01153 1.00081 1.60418 1.07043 1.14700 1.49796 1.21724 0.97984 0.87791 0.94707 0.90396 1.22251 0.99673 0.98283 0.98164 1.21563 0.98092 0.95922 0.99547 1.21947 0.94144 1.00578 0.90445 1.62383 1.29501 1.20132 1.14247 1.19255 0.83019 0.93382 0.94177 0.94246 1.21861 1.01735 0.96409 0.99179 1.21715 0.96935 1.23470 1.15685 0.92671 1.24906 0.98136 0.95598 0.94865 1.69883 1.18737 1.39861 1.24163 0.86678 0.80653 0.81390 0.79767 1.20674 1.21219 1.20146 1.21701 0.91807 0.90844 1.00547 0.91985 0.96463 0.91869 0.84450 0.92437 0.93222 0.92713 0.91890 0.94861 0.91023 0.95316 0.89772 0.96645 0.92953 0.91262 0.94497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.50 60.06 0.63 0.99 16 2 N -0.69 -9.99 6.61 -113.92 -0.75 -10.74 16 3 C 0.09 1.43 2.63 -67.63 -0.18 1.25 16 4 H 0.08 1.31 7.80 -51.93 -0.41 0.90 16 5 C -0.14 -2.15 5.25 -26.61 -0.14 -2.29 16 6 C -0.11 -1.78 6.09 -26.65 -0.16 -1.94 16 7 C 0.06 1.13 4.76 -3.84 -0.02 1.11 16 8 N -0.54 -11.67 4.70 -228.08 -1.07 -12.74 16 9 C 0.21 5.27 2.45 -68.86 -0.17 5.10 16 10 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 11 C -0.13 -3.27 8.55 37.16 0.32 -2.95 16 12 C -0.54 -14.64 7.19 -34.44 -0.25 -14.89 16 13 H 0.06 1.51 5.84 -52.49 -0.31 1.21 16 14 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 15 N -0.89 -25.34 11.32 55.43 0.63 -24.71 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.08 1.62 4.62 -3.83 -0.02 1.61 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.02 0.19 7.49 -51.93 -0.39 -0.20 16 23 H 0.06 0.74 8.06 -51.93 -0.42 0.32 16 24 H 0.34 4.56 8.54 -39.29 -0.34 4.23 16 25 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 26 H 0.05 0.65 7.52 -51.93 -0.39 0.26 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 29 H 0.03 0.72 7.03 -51.93 -0.37 0.35 16 30 H 0.07 1.43 5.87 -51.93 -0.30 1.13 16 31 H 0.03 0.67 6.20 -51.93 -0.32 0.34 16 32 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.07 1.50 8.12 -51.93 -0.42 1.08 16 36 H 0.04 0.82 6.57 -51.93 -0.34 0.47 16 LS Contribution 273.06 15.07 4.11 4.11 Total: -1.00 -27.87 273.06 -8.16 -36.03 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.98 Total: 1.90 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -0.08 Total: -10.24 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -1.20 Total: -48.20 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.87 -8.16 -36.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053204541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.697 kcal (2) G-P(sol) polarization free energy of solvation -27.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds