Wall clock time and date at job start Mon Mar 30 2020 03:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99632 * 2 1 4 4 H 1.08998 * 109.50958 * 325.07636 * 3 2 1 5 5 C 1.53119 * 109.53703 * 85.18153 * 3 2 1 6 6 C 1.53115 * 109.16409 * 177.61169 * 5 3 2 7 7 C 1.53034 * 109.27707 * 302.34168 * 6 5 3 8 8 N 1.46851 * 109.52199 * 59.17792 * 7 6 5 9 9 C 1.46900 * 110.99846 * 174.15901 * 8 7 6 10 10 H 1.08996 * 109.46966 * 179.21318 * 9 8 7 11 11 C 1.52994 * 109.47072 * 59.21114 * 9 8 7 12 12 C 1.50707 * 109.47192 * 299.20902 * 9 8 7 13 13 H 1.08002 * 119.99578 * 95.26242 * 12 9 8 14 14 C 1.37868 * 119.99903 * 275.26122 * 12 9 8 15 15 N 1.31515 * 120.00494 * 355.15394 * 14 12 9 16 16 Si 1.86808 * 119.99818 * 175.15144 * 14 12 9 17 17 H 1.48501 * 109.47037 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47225 * 240.00289 * 16 14 12 19 19 H 1.48492 * 109.47111 * 120.00102 * 16 14 12 20 20 C 1.46843 * 111.20132 * 298.25771 * 8 7 6 21 21 H 1.09000 * 109.46933 * 59.99991 * 1 2 3 22 22 H 1.08998 * 109.47041 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47310 * 299.99925 * 1 2 3 24 24 H 1.00897 * 110.99977 * 123.95603 * 2 1 3 25 25 H 1.09007 * 109.52030 * 297.51477 * 5 3 2 26 26 H 1.09005 * 109.52678 * 57.63904 * 5 3 2 27 27 H 1.09001 * 109.50232 * 62.28560 * 6 5 3 28 28 H 1.09000 * 109.50320 * 182.40438 * 6 5 3 29 29 H 1.08998 * 109.46716 * 299.16223 * 7 6 5 30 30 H 1.09002 * 109.46510 * 179.19189 * 7 6 5 31 31 H 1.09002 * 109.47282 * 175.02145 * 11 9 8 32 32 H 1.09002 * 109.47005 * 295.01985 * 11 9 8 33 33 H 1.08998 * 109.47335 * 55.02430 * 11 9 8 34 34 H 0.96999 * 119.99566 * 5.12232 * 15 14 12 35 35 H 1.08999 * 109.46544 * 181.75852 * 20 8 7 36 36 H 1.09003 * 109.46065 * 301.73667 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3394 2.0131 -0.5882 5 6 2.0657 1.8929 1.4379 6 6 2.6707 3.2995 1.4335 7 6 4.0548 3.2521 0.7823 8 7 3.9338 2.7474 -0.5914 9 6 5.2221 2.8184 -1.2937 10 1 5.1073 2.4256 -2.3040 11 6 6.2611 1.9872 -0.5384 12 6 5.6790 4.2529 -1.3614 13 1 6.3607 4.6381 -0.6175 14 6 5.2268 5.0734 -2.3728 15 7 4.4735 4.5811 -3.3319 16 14 5.6840 6.8846 -2.3811 17 1 6.5328 7.1862 -1.2004 18 1 4.4489 7.7072 -2.3252 19 1 6.4333 7.2003 -3.6236 20 6 3.3991 1.3799 -0.6097 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8306 -0.5261 0.7813 25 1 1.0620 1.9295 1.8616 26 1 2.6896 1.2289 2.0362 27 1 2.0252 3.9715 0.8679 28 1 2.7628 3.6592 2.4583 29 1 4.7038 2.5907 1.3563 30 1 4.4824 4.2545 0.7646 31 1 7.1920 1.9673 -1.1050 32 1 6.4408 2.4325 0.4402 33 1 5.8907 0.9699 -0.4123 34 1 4.1745 3.6593 -3.2888 35 1 3.3505 1.0226 -1.6383 36 1 4.0511 0.7273 -0.0290 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053204542.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:05 Heat of formation + Delta-G solvation = -6.547970 kcal Electronic energy + Delta-G solvation = -15142.894600 eV Core-core repulsion = 12854.297733 eV Total energy + Delta-G solvation = -2288.596867 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.80890 -35.84496 -33.32060 -31.58269 -29.42057 -28.31498 -24.78736 -24.59446 -23.24004 -21.76547 -20.48790 -18.90912 -16.62877 -15.59164 -14.89326 -14.32471 -14.11889 -13.73962 -13.70732 -13.53872 -13.20756 -12.57602 -12.33966 -12.02335 -11.71229 -11.44767 -11.13124 -10.99880 -10.72561 -10.63704 -10.31081 -10.08351 -10.04089 -9.78105 -9.59968 -8.56560 -8.21543 -8.20471 -6.98390 -6.25698 -3.99823 3.47729 3.51533 3.64320 4.32350 4.58792 5.02287 5.20175 5.28607 5.42185 5.50158 5.51591 5.68566 5.83714 5.91637 6.00477 6.04822 6.22215 6.25898 6.29537 6.32065 6.47029 6.47863 6.59495 6.64042 6.80331 6.93221 7.07086 7.20929 7.38028 7.53439 7.99609 8.38956 8.58514 8.63727 8.99124 9.78396 11.13740 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038431 B = 0.008778 C = 0.008690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.409470 B = 3189.190780 C = 3221.222760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.691 5.691 3 C 0.090 3.910 4 H 0.082 0.918 5 C -0.143 4.143 6 C -0.114 4.114 7 C 0.068 3.932 8 N -0.523 5.523 9 C 0.191 3.809 10 H 0.045 0.955 11 C -0.166 4.166 12 C -0.589 4.589 13 H 0.046 0.954 14 C 0.034 3.966 15 N -0.900 5.900 16 Si 1.069 2.931 17 H -0.291 1.291 18 H -0.288 1.288 19 H -0.288 1.288 20 C 0.065 3.935 21 H 0.064 0.936 22 H 0.062 0.938 23 H 0.018 0.982 24 H 0.335 0.665 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.013 0.987 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.026 0.974 34 H 0.276 0.724 35 H 0.067 0.933 36 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.999 -5.784 8.348 11.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.320 5.320 3 C -0.020 4.020 4 H 0.100 0.900 5 C -0.182 4.182 6 C -0.152 4.152 7 C -0.060 4.060 8 N -0.249 5.249 9 C 0.086 3.914 10 H 0.063 0.937 11 C -0.226 4.226 12 C -0.628 4.628 13 H 0.064 0.936 14 C -0.173 4.173 15 N -0.535 5.535 16 Si 0.899 3.101 17 H -0.217 1.217 18 H -0.214 1.214 19 H -0.215 1.215 20 C -0.064 4.064 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.037 0.963 24 H 0.152 0.848 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -5.427 -4.182 6.504 9.447 hybrid contribution 0.430 -1.721 2.391 2.977 sum -4.998 -5.903 8.894 11.787 Atomic orbital electron populations 1.22174 0.88308 1.01154 1.00316 1.60459 1.07312 1.14772 1.49496 1.21675 0.97695 0.87794 0.94863 0.89956 1.22242 0.99756 0.98362 0.97841 1.21562 0.98356 0.95776 0.99518 1.21798 0.93931 1.01118 0.89192 1.62740 1.30234 1.17728 1.14158 1.19475 0.82870 0.96150 0.92915 0.93674 1.22379 1.01133 0.98214 1.00825 1.21798 1.30087 0.95614 1.15255 0.93571 1.25703 0.94313 1.05103 0.92190 1.70642 1.33022 1.18354 1.31498 0.83561 0.76013 0.75092 0.75475 1.21703 1.21430 1.21499 1.21944 0.92843 0.91777 0.99842 0.91706 0.91968 0.96342 0.84754 0.93122 0.92789 0.91426 0.92759 0.96934 0.89804 0.93536 0.94056 0.95491 0.91175 0.91460 0.96429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.50 60.07 0.63 1.00 16 2 N -0.69 -9.95 6.61 -113.92 -0.75 -10.70 16 3 C 0.09 1.51 2.63 -67.63 -0.18 1.33 16 4 H 0.08 1.53 7.80 -51.93 -0.41 1.12 16 5 C -0.14 -2.18 5.26 -26.61 -0.14 -2.32 16 6 C -0.11 -1.94 6.09 -26.65 -0.16 -2.11 16 7 C 0.07 1.40 4.68 -3.83 -0.02 1.38 16 8 N -0.52 -11.87 4.63 -228.08 -1.06 -12.92 16 9 C 0.19 4.77 2.07 -68.86 -0.14 4.63 16 10 H 0.05 1.24 6.61 -51.93 -0.34 0.90 16 11 C -0.17 -3.65 8.44 37.15 0.31 -3.34 16 12 C -0.59 -16.21 7.05 -34.44 -0.24 -16.45 16 13 H 0.05 1.28 7.81 -52.49 -0.41 0.87 16 14 C 0.03 0.98 5.45 -17.82 -0.10 0.88 16 15 N -0.90 -27.10 13.63 55.43 0.76 -26.35 16 16 Si 1.07 25.28 29.91 -169.99 -5.08 20.19 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.06 1.29 4.64 -3.83 -0.02 1.27 16 21 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.02 0.21 7.50 -51.93 -0.39 -0.18 16 24 H 0.34 4.33 8.53 -39.29 -0.34 4.00 16 25 H 0.05 0.70 7.54 -51.93 -0.39 0.31 16 26 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.01 0.25 6.73 -51.93 -0.35 -0.10 16 30 H 0.08 1.90 6.91 -51.93 -0.36 1.55 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.04 0.88 6.81 -51.93 -0.35 0.53 16 33 H 0.03 0.54 6.42 -51.93 -0.33 0.20 16 34 H 0.28 8.39 6.66 -40.82 -0.27 8.12 16 35 H 0.07 1.42 8.08 -51.93 -0.42 1.00 16 36 H 0.02 0.35 6.62 -51.93 -0.34 0.00 16 LS Contribution 275.66 15.07 4.15 4.15 Total: -1.00 -29.01 275.66 -8.07 -37.08 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.03 Total: 2.28 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -0.05 Total: -13.74 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -1.05 Total: -49.97 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.08 Total: 20.19 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.01 -8.07 -37.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053204542.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.532 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds