Wall clock time and date at job start Mon Mar 30 2020 03:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47247 * 89.99769 * 8 6 4 10 10 H 1.48496 * 109.47178 * 209.99766 * 8 6 4 11 11 H 1.48504 * 109.47095 * 329.99574 * 8 6 4 12 12 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 13 13 C 1.46900 * 110.99922 * 85.00294 * 12 2 1 14 14 C 1.53004 * 109.46707 * 179.97438 * 13 12 2 15 15 N 1.46900 * 109.46707 * 180.02562 * 14 13 12 16 16 C 1.46896 * 111.00104 * 66.04703 * 15 14 13 17 17 C 1.46900 * 110.99664 * 190.00106 * 15 14 13 18 18 C 1.53003 * 117.49784 * 243.74656 * 17 15 14 19 19 C 1.53008 * 117.49805 * 175.08998 * 17 15 14 20 20 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 23 23 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 24 24 H 1.00893 * 111.00120 * 321.04546 * 12 2 1 25 25 H 1.08996 * 109.46839 * 299.99510 * 13 12 2 26 26 H 1.09003 * 109.47177 * 60.00055 * 13 12 2 27 27 H 1.08999 * 109.46901 * 299.99864 * 14 13 12 28 28 H 1.09003 * 109.47117 * 60.00189 * 14 13 12 29 29 H 1.08996 * 109.47385 * 59.99928 * 16 15 14 30 30 H 1.09000 * 109.47228 * 179.97438 * 16 15 14 31 31 H 1.08998 * 109.47315 * 299.99967 * 16 15 14 32 32 H 1.09002 * 115.55447 * 29.41589 * 17 15 14 33 33 H 1.09000 * 117.49861 * 359.97438 * 18 17 15 34 34 H 1.08997 * 117.50311 * 145.02126 * 18 17 15 35 35 H 1.09003 * 117.49655 * 214.98245 * 19 17 15 36 36 H 1.08998 * 117.49779 * 359.96800 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.6303 -0.5440 4.4120 10 1 1.3443 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7123 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5963 -0.5330 -3.5741 15 7 2.6597 0.3823 -4.7214 16 6 3.6696 1.4271 -4.5062 17 6 2.9192 -0.3521 -5.9669 18 6 4.2288 -0.0574 -6.7011 19 6 2.9005 0.4440 -7.2734 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.7094 1.1619 3.4844 24 1 1.4496 -1.4979 -1.4100 25 1 1.0872 0.6163 -2.5525 26 1 2.7590 1.0462 -2.1182 27 1 3.5917 -0.9263 -3.3681 28 1 1.9202 -1.3568 -3.8030 29 1 4.6478 0.9651 -4.3732 30 1 3.6961 2.0905 -5.3706 31 1 3.4147 2.0008 -3.6151 32 1 2.5454 -1.3757 -5.9958 33 1 4.8976 0.6818 -6.2602 34 1 4.7164 -0.8868 -7.2133 35 1 2.5147 -0.0560 -8.1619 36 1 2.6952 1.5125 -7.2088 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061996855.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:01 Heat of formation + Delta-G solvation = 32.355556 kcal Electronic energy + Delta-G solvation = -14148.849478 eV Core-core repulsion = 11861.939595 eV Total energy + Delta-G solvation = -2286.909883 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.90721 -36.19924 -34.06362 -32.21661 -29.32133 -27.06476 -25.35992 -24.97231 -22.49028 -21.23171 -20.22539 -19.89362 -16.69952 -16.27517 -15.43567 -14.95774 -14.68195 -14.08122 -13.49371 -13.28641 -12.92599 -12.40570 -12.09351 -11.82506 -11.60181 -11.52194 -11.39420 -10.93361 -10.90295 -10.67228 -10.61632 -10.44693 -10.21529 -10.07992 -9.77933 -8.96686 -8.33158 -8.08665 -7.19287 -5.95356 -3.98663 3.34847 3.40765 3.44961 3.61914 4.01101 4.47449 4.76165 4.85975 4.95643 5.20559 5.35865 5.38464 5.43135 5.52866 5.65493 5.71201 5.80300 5.89253 5.98010 6.01392 6.05434 6.41606 6.49599 6.74917 6.89301 7.08071 7.13677 7.18290 7.43242 7.77862 7.91820 8.31371 8.57611 8.66001 9.08573 9.66585 11.11734 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.066567 B = 0.005211 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.526832 B = 5372.424916 C = 5491.643721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.212 3.788 3 H 0.032 0.968 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.686 5.686 13 C 0.064 3.936 14 C 0.060 3.940 15 N -0.511 5.511 16 C 0.018 3.982 17 C 0.025 3.975 18 C -0.222 4.222 19 C -0.174 4.174 20 H 0.006 0.994 21 H 0.027 0.973 22 H 0.088 0.912 23 H 0.259 0.741 24 H 0.324 0.676 25 H 0.026 0.974 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.489 -0.826 -15.195 15.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.316 5.316 13 C -0.066 4.066 14 C -0.068 4.068 15 N -0.233 5.233 16 C -0.130 4.130 17 C -0.085 4.085 18 C -0.261 4.261 19 C -0.212 4.212 20 H 0.025 0.975 21 H 0.046 0.954 22 H 0.107 0.893 23 H 0.069 0.931 24 H 0.140 0.860 25 H 0.045 0.955 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.134 0.866 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.612 -0.389 -14.889 15.326 hybrid contribution 0.081 -0.630 0.676 0.928 sum 3.692 -1.020 -14.213 14.720 Atomic orbital electron populations 1.22420 1.00663 0.99182 1.00525 1.19158 0.89653 0.94355 0.86387 0.94973 1.21172 1.30125 1.12421 0.89642 0.91983 1.24956 0.95351 0.95239 0.99033 1.69886 1.37358 1.23240 1.23297 0.86506 0.78425 0.80019 0.82468 1.20795 1.21426 1.19944 1.60775 1.58102 1.09191 1.03509 1.21843 0.99024 0.95876 0.89895 1.22149 1.00516 0.94519 0.89568 1.61804 1.46754 1.13269 1.01495 1.22534 0.93141 0.94998 1.02287 1.22673 0.99313 0.97670 0.88811 1.23557 0.92058 1.04422 1.06026 1.23047 1.00360 1.00913 0.96843 0.97507 0.95363 0.89315 0.93097 0.85981 0.95535 0.91858 0.93877 0.91223 0.95020 0.91758 0.90588 0.86629 0.88257 0.89057 0.88724 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.94 37.16 0.33 -3.82 16 2 C 0.21 5.45 2.57 -68.86 -0.18 5.27 16 3 H 0.03 0.91 7.80 -51.93 -0.40 0.50 16 4 C -0.49 -13.91 8.84 -34.44 -0.30 -14.21 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -26.03 11.32 55.43 0.63 -25.40 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.69 -14.86 6.23 -107.95 -0.67 -15.53 16 13 C 0.06 1.18 5.41 -3.82 -0.02 1.16 16 14 C 0.06 0.92 5.19 -3.82 -0.02 0.90 16 15 N -0.51 -7.07 4.97 -234.88 -1.17 -8.24 16 16 C 0.02 0.23 7.96 60.06 0.48 0.71 16 17 C 0.03 0.29 6.11 -67.71 -0.41 -0.12 16 18 C -0.22 -2.22 9.51 -26.69 -0.25 -2.48 16 19 C -0.17 -1.73 9.99 -26.69 -0.27 -1.99 16 20 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 21 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 22 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.32 6.63 8.47 -39.30 -0.33 6.30 16 25 H 0.03 0.51 7.44 -51.93 -0.39 0.13 16 26 H 0.06 1.22 6.46 -51.93 -0.34 0.88 16 27 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 28 H 0.07 1.01 7.96 -51.93 -0.41 0.60 16 29 H 0.03 0.39 7.23 -51.93 -0.38 0.02 16 30 H 0.06 0.71 6.63 -51.93 -0.34 0.37 16 31 H 0.08 1.03 6.47 -51.93 -0.34 0.69 16 32 H 0.12 1.27 7.93 -51.93 -0.41 0.86 16 33 H 0.10 1.01 5.89 -51.93 -0.31 0.70 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.97 7.56 -51.93 -0.39 0.58 16 LS Contribution 285.22 15.07 4.30 4.30 Total: -1.00 -28.78 285.22 -8.65 -37.43 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.98 Total: 3.90 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -0.74 Total: -13.14 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -1.21 Total: -49.17 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.78 -8.65 -37.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061996855.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.790 kcal (2) G-P(sol) polarization free energy of solvation -28.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds