Wall clock time and date at job start Mon Mar 30 2020 03:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47247 * 89.99769 * 8 6 4 10 10 H 1.48496 * 109.47178 * 209.99766 * 8 6 4 11 11 H 1.48504 * 109.47095 * 329.99574 * 8 6 4 12 12 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 13 13 C 1.46900 * 110.99922 * 85.00294 * 12 2 1 14 14 C 1.53004 * 109.46707 * 179.97438 * 13 12 2 15 15 N 1.46900 * 109.46707 * 180.02562 * 14 13 12 16 16 C 1.46896 * 111.00104 * 66.04703 * 15 14 13 17 17 C 1.46900 * 110.99664 * 190.00106 * 15 14 13 18 18 C 1.53003 * 117.49784 * 243.74656 * 17 15 14 19 19 C 1.53008 * 117.49805 * 175.08998 * 17 15 14 20 20 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 23 23 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 24 24 H 1.00893 * 111.00120 * 321.04546 * 12 2 1 25 25 H 1.08996 * 109.46839 * 299.99510 * 13 12 2 26 26 H 1.09003 * 109.47177 * 60.00055 * 13 12 2 27 27 H 1.08999 * 109.46901 * 299.99864 * 14 13 12 28 28 H 1.09003 * 109.47117 * 60.00189 * 14 13 12 29 29 H 1.08996 * 109.47385 * 59.99928 * 16 15 14 30 30 H 1.09000 * 109.47228 * 179.97438 * 16 15 14 31 31 H 1.08998 * 109.47315 * 299.99967 * 16 15 14 32 32 H 1.09002 * 115.55447 * 29.41589 * 17 15 14 33 33 H 1.09000 * 117.49861 * 359.97438 * 18 17 15 34 34 H 1.08997 * 117.50311 * 145.02126 * 18 17 15 35 35 H 1.09003 * 117.49655 * 214.98245 * 19 17 15 36 36 H 1.08998 * 117.49779 * 359.96800 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.6303 -0.5440 4.4120 10 1 1.3443 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7123 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5963 -0.5330 -3.5741 15 7 2.6597 0.3823 -4.7214 16 6 3.6696 1.4271 -4.5062 17 6 2.9192 -0.3521 -5.9669 18 6 4.2288 -0.0574 -6.7011 19 6 2.9005 0.4440 -7.2734 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.7094 1.1619 3.4844 24 1 1.4496 -1.4979 -1.4100 25 1 1.0872 0.6163 -2.5525 26 1 2.7590 1.0462 -2.1182 27 1 3.5917 -0.9263 -3.3681 28 1 1.9202 -1.3568 -3.8030 29 1 4.6478 0.9651 -4.3732 30 1 3.6961 2.0905 -5.3706 31 1 3.4147 2.0008 -3.6151 32 1 2.5454 -1.3757 -5.9958 33 1 4.8976 0.6818 -6.2602 34 1 4.7164 -0.8868 -7.2133 35 1 2.5147 -0.0560 -8.1619 36 1 2.6952 1.5125 -7.2088 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061996855.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:01 Heat of formation + Delta-G solvation = 12.654630 kcal Electronic energy + Delta-G solvation = -14149.703774 eV Core-core repulsion = 11861.939595 eV Total energy + Delta-G solvation = -2287.764180 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.90485 -37.90541 -35.45001 -34.02577 -31.02616 -28.36272 -27.25876 -26.58793 -23.29233 -22.59936 -22.12909 -20.93410 -18.35529 -17.69621 -16.76074 -16.63545 -16.16575 -15.45158 -15.00286 -14.74941 -14.42569 -13.93188 -13.50790 -13.27918 -13.12314 -12.87691 -12.70282 -12.64297 -12.44064 -12.24294 -12.16605 -11.91305 -11.77283 -11.56450 -11.21708 -10.99538 -10.48529 -9.11419 -8.98919 -8.09251 -6.20969 1.44433 1.44585 1.55882 2.43998 2.65893 3.09905 3.19072 3.83585 3.87371 4.01505 4.12438 4.13885 4.26602 4.45044 4.55904 4.62891 4.74004 4.78084 4.85294 4.90135 4.93946 4.99016 5.03630 5.11266 5.15947 5.26596 5.40809 5.68998 5.80941 6.02751 6.13519 6.26937 6.63052 6.82569 6.94356 7.49171 8.96579 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.066567 B = 0.005211 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.526832 B = 5372.424916 C = 5491.643721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H -0.001 1.001 4 C -0.516 4.516 5 H 0.056 0.944 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.268 1.268 12 N -0.687 5.687 13 C 0.071 3.929 14 C 0.075 3.925 15 N -0.522 5.522 16 C 0.020 3.980 17 C 0.003 3.997 18 C -0.213 4.213 19 C -0.164 4.164 20 H 0.023 0.977 21 H 0.034 0.966 22 H 0.062 0.938 23 H 0.261 0.739 24 H 0.333 0.667 25 H 0.019 0.981 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.080 0.920 29 H 0.033 0.967 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.929 -1.715 -16.215 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.107 3.893 3 H 0.017 0.983 4 C -0.555 4.555 5 H 0.074 0.926 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.789 3.211 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.192 1.192 12 N -0.318 5.318 13 C -0.059 4.059 14 C -0.053 4.053 15 N -0.244 5.244 16 C -0.128 4.128 17 C -0.106 4.106 18 C -0.252 4.252 19 C -0.201 4.201 20 H 0.042 0.958 21 H 0.053 0.947 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.150 0.850 25 H 0.037 0.963 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.140 0.860 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.056 -1.284 -15.939 16.497 hybrid contribution -0.050 -0.315 0.922 0.976 sum 4.006 -1.599 -15.017 15.624 Atomic orbital electron populations 1.22227 0.99909 0.99358 0.99991 1.18932 0.90136 0.92602 0.87596 0.98347 1.21458 1.30493 1.12541 0.91007 0.92593 1.25751 0.95409 0.95892 1.01989 1.70016 1.38036 1.24321 1.24030 0.85479 0.77891 0.79072 0.78687 1.20364 1.20858 1.19223 1.60628 1.57907 1.09707 1.03509 1.21796 0.98485 0.95447 0.90201 1.21904 1.00135 0.94452 0.88853 1.61780 1.47524 1.13388 1.01743 1.22530 0.92977 0.94948 1.02371 1.22793 1.01267 0.98238 0.88332 1.23593 0.91712 1.04676 1.05247 1.23120 0.99990 1.00678 0.96347 0.95822 0.94683 0.91959 0.92978 0.84998 0.96251 0.93092 0.94430 0.90203 0.94802 0.90094 0.92116 0.85982 0.88477 0.87676 0.86965 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.68 8.94 71.98 0.64 -7.04 16 2 C 0.22 11.26 2.57 44.17 0.11 11.37 16 3 H 0.00 -0.08 7.80 -2.39 -0.02 -0.10 16 4 C -0.52 -29.22 8.84 25.60 0.23 -28.99 16 5 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 6 C 0.01 0.43 5.30 84.66 0.45 0.88 16 7 N -0.92 -54.07 11.32 21.45 0.24 -53.82 16 8 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 N -0.69 -29.74 6.23 -495.44 -3.09 -32.83 16 13 C 0.07 2.62 5.41 86.30 0.47 3.09 16 14 C 0.07 2.21 5.19 86.30 0.45 2.66 16 15 N -0.52 -13.79 4.97 -897.03 -4.46 -18.25 16 16 C 0.02 0.48 7.96 127.69 1.02 1.49 16 17 C 0.00 0.06 6.11 44.92 0.27 0.33 16 18 C -0.21 -3.75 9.51 30.62 0.29 -3.46 16 19 C -0.16 -2.83 9.99 30.62 0.31 -2.52 16 20 H 0.02 1.04 7.45 -2.39 -0.02 1.02 16 21 H 0.03 1.63 8.13 -2.39 -0.02 1.61 16 22 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 23 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 24 H 0.33 13.38 8.47 -89.70 -0.76 12.62 16 25 H 0.02 0.75 7.44 -2.39 -0.02 0.73 16 26 H 0.05 2.00 6.46 -2.39 -0.02 1.99 16 27 H 0.04 1.15 8.12 -2.39 -0.02 1.14 16 28 H 0.08 2.20 7.96 -2.39 -0.02 2.18 16 29 H 0.03 0.80 7.23 -2.39 -0.02 0.79 16 30 H 0.08 1.69 6.63 -2.39 -0.02 1.67 16 31 H 0.06 1.66 6.47 -2.39 -0.02 1.64 16 32 H 0.12 2.40 7.93 -2.39 -0.02 2.39 16 33 H 0.10 1.76 5.89 -2.39 -0.01 1.75 16 34 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.09 1.67 7.56 -2.39 -0.02 1.65 16 Total: -1.00 -60.63 285.22 -0.76 -61.39 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.29 Total: 19.33 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 4.23 Total: -22.19 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -7.30 Total: -104.91 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -60.63 -0.76 -61.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061996855.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.042 kcal (2) G-P(sol) polarization free energy of solvation -60.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds