Wall clock time and date at job start Mon Mar 30 2020 03:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46496 * 109.47484 * 295.00296 * 4 2 1 6 6 C 1.36937 * 120.00458 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99642 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00408 * 179.97438 * 6 5 4 9 9 N 1.31614 * 119.99921 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99586 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47082 * 90.00460 * 10 8 6 12 12 H 1.48501 * 109.46706 * 210.00151 * 10 8 6 13 13 H 1.48496 * 109.47078 * 329.99978 * 10 8 6 14 14 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 15 15 N 1.46901 * 109.46818 * 65.00620 * 14 2 1 16 16 C 1.48528 * 111.00412 * 52.59954 * 15 14 2 17 17 C 1.54932 * 103.22764 * 159.72006 * 16 15 14 18 18 C 1.54593 * 102.92718 * 322.58899 * 17 16 15 19 19 C 1.47901 * 110.99850 * 170.00033 * 15 14 2 20 20 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 24 24 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 25 25 H 0.97005 * 119.99584 * 359.97438 * 5 4 2 26 26 H 0.97010 * 119.99490 * 179.97438 * 9 8 6 27 27 H 1.09002 * 109.47069 * 184.99942 * 14 2 1 28 28 H 1.08991 * 109.47625 * 305.00262 * 14 2 1 29 29 H 1.09000 * 110.66772 * 278.16041 * 16 15 14 30 30 H 1.08998 * 110.67010 * 41.28861 * 16 15 14 31 31 H 1.09007 * 110.72548 * 204.22509 * 17 16 15 32 32 H 1.09006 * 110.72623 * 80.94805 * 17 16 15 33 33 H 1.09003 * 110.30885 * 263.04757 * 18 17 16 34 34 H 1.08991 * 110.31468 * 140.86889 * 18 17 16 35 35 H 1.09002 * 109.91776 * 333.50131 * 19 15 14 36 36 H 1.08998 * 109.91738 * 94.60624 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6523 0.0353 2.4424 6 6 2.0018 -0.4203 3.6856 7 1 2.5628 -1.3376 3.7865 8 6 1.6349 0.2969 4.8161 9 7 1.9704 -0.1413 6.0109 10 14 0.6652 1.8839 4.6414 11 1 -0.7884 1.5810 4.6659 12 1 1.0000 2.7947 5.7655 13 1 1.0131 2.5375 3.3542 14 6 2.0401 -0.7213 -1.2492 15 7 1.6515 0.0374 -2.4456 16 6 2.0755 1.4567 -2.3368 17 6 2.0778 1.9398 -3.8089 18 6 2.6031 0.7054 -4.5772 19 6 2.3242 -0.4931 -3.6512 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6053 -1.7198 1.2952 24 1 3.1263 -0.7995 1.2056 25 1 1.1487 0.8594 2.3517 26 1 1.7143 0.3601 6.8009 27 1 3.1264 -0.7995 -1.2055 28 1 1.6055 -1.7198 -1.2951 29 1 1.3597 2.0278 -1.7456 30 1 3.0746 1.5280 -1.9071 31 1 2.7507 2.7880 -3.9355 32 1 1.0688 2.1950 -4.1328 33 1 3.6734 0.8009 -4.7601 34 1 2.0664 0.5890 -5.5186 35 1 3.2622 -0.9730 -3.3722 36 1 1.6750 -1.2106 -4.1532 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062072202.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:44 Heat of formation + Delta-G solvation = 6.566373 kcal Electronic energy + Delta-G solvation = -14426.419919 eV Core-core repulsion = 12138.391733 eV Total energy + Delta-G solvation = -2288.028186 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.18008 -36.19602 -33.45847 -31.38069 -30.00690 -28.87352 -26.21223 -24.98825 -22.25548 -21.28819 -20.77122 -19.41927 -17.46385 -16.14158 -15.98790 -14.78072 -14.50283 -14.08829 -13.79770 -13.38758 -13.22872 -12.61407 -12.41226 -12.18205 -11.95157 -11.56946 -11.43063 -11.29413 -11.20380 -10.90645 -10.73189 -10.55434 -10.30444 -10.23197 -9.99724 -9.54128 -8.85428 -8.39334 -7.17839 -5.73427 -3.07993 3.39986 3.43103 3.47375 3.98615 4.53973 4.60256 4.62553 4.83303 5.11622 5.19851 5.26636 5.40264 5.52774 5.56055 5.58614 5.64561 5.70893 5.78571 5.86719 5.89635 5.93155 5.98995 6.05051 6.09718 6.41316 6.47713 6.62315 6.75411 6.85201 6.94933 7.07239 8.03862 8.46116 9.25790 9.98384 10.19107 11.45281 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054221 B = 0.006281 C = 0.005970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.279678 B = 4456.971919 C = 4689.369296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 H 0.069 0.931 4 C 0.162 3.838 5 N -0.754 5.754 6 C -0.242 4.242 7 H 0.089 0.911 8 C 0.003 3.997 9 N -0.936 5.936 10 Si 0.884 3.116 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.055 3.945 15 N -0.515 5.515 16 C 0.032 3.968 17 C -0.125 4.125 18 C -0.130 4.130 19 C 0.034 3.966 20 H 0.052 0.948 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.028 0.972 24 H 0.022 0.978 25 H 0.361 0.639 26 H 0.259 0.741 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.157 2.475 -20.785 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.122 4.122 3 H 0.087 0.913 4 C 0.035 3.965 5 N -0.400 5.400 6 C -0.372 4.372 7 H 0.107 0.893 8 C -0.192 4.192 9 N -0.584 5.584 10 Si 0.714 3.286 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.204 1.204 14 C -0.073 4.073 15 N -0.239 5.239 16 C -0.095 4.095 17 C -0.163 4.163 18 C -0.169 4.169 19 C -0.094 4.094 20 H 0.071 0.929 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.045 0.955 24 H 0.040 0.960 25 H 0.194 0.806 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.622 2.264 -20.641 20.774 hybrid contribution 0.276 1.116 0.195 1.166 sum -0.345 3.380 -20.446 20.726 Atomic orbital electron populations 1.21671 0.94558 1.01761 1.01051 1.21432 0.97044 0.99853 0.93853 0.91292 1.20619 0.96667 0.94311 0.84933 1.42706 1.67817 1.27103 1.02375 1.19082 1.29322 1.06939 0.81852 0.89285 1.24660 1.00864 0.98634 0.95084 1.69707 1.51501 1.40306 0.96912 0.86550 0.80518 0.84658 0.76866 1.21015 1.21738 1.20369 1.22307 0.97837 0.97847 0.89307 1.64788 1.54461 1.02162 1.02490 1.23250 0.99501 0.90127 0.96658 1.22489 1.01603 0.97207 0.94972 1.22388 1.00847 0.94828 0.98802 1.22872 0.97407 0.97274 0.91867 0.92935 0.92590 0.92993 0.95452 0.95964 0.80624 0.93112 0.94643 0.90483 0.89804 0.93640 0.91291 0.90868 0.91737 0.91229 0.93888 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.95 37.16 0.33 -1.78 16 2 C -0.10 -1.66 2.11 -90.62 -0.19 -1.85 16 3 H 0.07 1.14 6.52 -51.93 -0.34 0.80 16 4 C 0.16 3.27 5.65 -4.05 -0.02 3.24 16 5 N -0.75 -18.58 5.13 -59.91 -0.31 -18.89 16 6 C -0.24 -7.07 10.47 -15.06 -0.16 -7.22 16 7 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 8 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 9 N -0.94 -29.99 13.97 55.49 0.78 -29.22 16 10 Si 0.88 22.61 27.74 -169.99 -4.71 17.90 16 11 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 13 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 14 C 0.06 0.76 4.42 -3.82 -0.02 0.74 16 15 N -0.51 -6.42 4.85 -230.46 -1.12 -7.54 16 16 C 0.03 0.38 5.09 -1.90 -0.01 0.37 16 17 C -0.12 -1.18 7.06 -24.87 -0.18 -1.35 16 18 C -0.13 -1.15 6.93 -25.37 -0.18 -1.33 16 19 C 0.03 0.35 6.70 -2.75 -0.02 0.33 16 20 H 0.05 0.91 7.18 -51.93 -0.37 0.54 16 21 H 0.06 0.81 7.75 -51.93 -0.40 0.41 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 25 H 0.36 8.68 4.71 -40.82 -0.19 8.49 16 26 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 27 H 0.04 0.48 7.81 -51.93 -0.41 0.08 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 1.03 7.56 -51.93 -0.39 0.64 16 30 H 0.05 0.56 8.01 -51.93 -0.42 0.14 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.04 0.44 7.57 -51.93 -0.39 0.05 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 282.05 15.07 4.25 4.25 Total: -1.00 -31.44 282.05 -7.95 -39.39 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.31 Total: 2.95 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -0.53 Total: -8.84 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.65 Total: -55.65 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.71 Total: 17.90 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.44 -7.95 -39.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062072202.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.960 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds