Wall clock time and date at job start Mon Mar 30 2020 03:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46496 * 109.47484 * 295.00296 * 4 2 1 6 6 C 1.36937 * 120.00458 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99642 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00408 * 179.97438 * 6 5 4 9 9 N 1.31614 * 119.99921 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99586 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47082 * 90.00460 * 10 8 6 12 12 H 1.48501 * 109.46706 * 210.00151 * 10 8 6 13 13 H 1.48496 * 109.47078 * 329.99978 * 10 8 6 14 14 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 15 15 N 1.46901 * 109.46818 * 65.00620 * 14 2 1 16 16 C 1.48528 * 111.00412 * 52.59954 * 15 14 2 17 17 C 1.54932 * 103.22764 * 159.72006 * 16 15 14 18 18 C 1.54593 * 102.92718 * 322.58899 * 17 16 15 19 19 C 1.47901 * 110.99850 * 170.00033 * 15 14 2 20 20 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 24 24 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 25 25 H 0.97005 * 119.99584 * 359.97438 * 5 4 2 26 26 H 0.97010 * 119.99490 * 179.97438 * 9 8 6 27 27 H 1.09002 * 109.47069 * 184.99942 * 14 2 1 28 28 H 1.08991 * 109.47625 * 305.00262 * 14 2 1 29 29 H 1.09000 * 110.66772 * 278.16041 * 16 15 14 30 30 H 1.08998 * 110.67010 * 41.28861 * 16 15 14 31 31 H 1.09007 * 110.72548 * 204.22509 * 17 16 15 32 32 H 1.09006 * 110.72623 * 80.94805 * 17 16 15 33 33 H 1.09003 * 110.30885 * 263.04757 * 18 17 16 34 34 H 1.08991 * 110.31468 * 140.86889 * 18 17 16 35 35 H 1.09002 * 109.91776 * 333.50131 * 19 15 14 36 36 H 1.08998 * 109.91738 * 94.60624 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6523 0.0353 2.4424 6 6 2.0018 -0.4203 3.6856 7 1 2.5628 -1.3376 3.7865 8 6 1.6349 0.2969 4.8161 9 7 1.9704 -0.1413 6.0109 10 14 0.6652 1.8839 4.6414 11 1 -0.7884 1.5810 4.6659 12 1 1.0000 2.7947 5.7655 13 1 1.0131 2.5375 3.3542 14 6 2.0401 -0.7213 -1.2492 15 7 1.6515 0.0374 -2.4456 16 6 2.0755 1.4567 -2.3368 17 6 2.0778 1.9398 -3.8089 18 6 2.6031 0.7054 -4.5772 19 6 2.3242 -0.4931 -3.6512 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6053 -1.7198 1.2952 24 1 3.1263 -0.7995 1.2056 25 1 1.1487 0.8594 2.3517 26 1 1.7143 0.3601 6.8009 27 1 3.1264 -0.7995 -1.2055 28 1 1.6055 -1.7198 -1.2951 29 1 1.3597 2.0278 -1.7456 30 1 3.0746 1.5280 -1.9071 31 1 2.7507 2.7880 -3.9355 32 1 1.0688 2.1950 -4.1328 33 1 3.6734 0.8009 -4.7601 34 1 2.0664 0.5890 -5.5186 35 1 3.2622 -0.9730 -3.3722 36 1 1.6750 -1.2106 -4.1532 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062072202.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:43 Heat of formation + Delta-G solvation = -14.815077 kcal Electronic energy + Delta-G solvation = -14427.347088 eV Core-core repulsion = 12138.391733 eV Total energy + Delta-G solvation = -2288.955356 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.14492 -37.70900 -35.19644 -33.16317 -31.38487 -29.71958 -27.71987 -26.44010 -23.97695 -22.45904 -21.63126 -20.79747 -19.47866 -17.19745 -16.96597 -16.46125 -15.96528 -15.58460 -15.18870 -14.84190 -14.52262 -14.13719 -13.65179 -13.54698 -13.23762 -13.01864 -12.86041 -12.53770 -12.24841 -12.20648 -12.04420 -11.89323 -11.77741 -11.53918 -11.50684 -11.36116 -10.99401 -9.35846 -9.30616 -8.04911 -5.38333 1.35843 1.39638 1.46871 2.46651 3.01409 3.26403 3.56678 3.78667 3.87061 3.99824 4.10625 4.20665 4.25371 4.39010 4.55591 4.65163 4.69631 4.77602 4.80653 4.93171 4.95460 5.00563 5.08631 5.11073 5.16814 5.23844 5.32913 5.38038 5.47641 5.73001 5.99214 6.08583 6.19870 7.05705 7.81948 8.02061 9.16845 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054221 B = 0.006281 C = 0.005970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.279678 B = 4456.971919 C = 4689.369296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.090 4.090 3 H 0.068 0.932 4 C 0.159 3.841 5 N -0.756 5.756 6 C -0.238 4.238 7 H 0.055 0.945 8 C -0.063 4.063 9 N -0.984 5.984 10 Si 0.955 3.045 11 H -0.276 1.276 12 H -0.293 1.293 13 H -0.253 1.253 14 C 0.064 3.936 15 N -0.522 5.522 16 C 0.027 3.973 17 C -0.120 4.120 18 C -0.126 4.126 19 C 0.030 3.970 20 H 0.035 0.965 21 H 0.071 0.929 22 H 0.051 0.949 23 H 0.025 0.975 24 H 0.019 0.981 25 H 0.366 0.634 26 H 0.259 0.741 27 H 0.034 0.966 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.836 3.759 -23.157 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.109 4.109 3 H 0.086 0.914 4 C 0.033 3.967 5 N -0.402 5.402 6 C -0.369 4.369 7 H 0.073 0.927 8 C -0.254 4.254 9 N -0.634 5.634 10 Si 0.782 3.218 11 H -0.202 1.202 12 H -0.219 1.219 13 H -0.178 1.178 14 C -0.065 4.065 15 N -0.246 5.246 16 C -0.101 4.101 17 C -0.158 4.158 18 C -0.164 4.164 19 C -0.098 4.098 20 H 0.054 0.946 21 H 0.090 0.910 22 H 0.070 0.930 23 H 0.043 0.957 24 H 0.037 0.963 25 H 0.200 0.800 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.297 3.541 -23.072 23.378 hybrid contribution 0.543 0.614 0.904 1.220 sum -0.754 4.155 -22.168 22.567 Atomic orbital electron populations 1.21616 0.94056 1.01786 1.00988 1.21282 0.97281 0.99452 0.92931 0.91371 1.20779 0.96493 0.94264 0.85203 1.42697 1.67773 1.27620 1.02079 1.19063 1.28186 1.05701 0.83977 0.92709 1.25512 1.02578 1.02772 0.94553 1.69889 1.53407 1.42245 0.97902 0.85408 0.78880 0.79806 0.77730 1.20184 1.21911 1.17765 1.22150 0.97654 0.97808 0.88896 1.64787 1.54934 1.02482 1.02443 1.23298 0.98790 0.89772 0.98252 1.22484 1.02215 0.97871 0.93247 1.22392 1.01627 0.93583 0.98836 1.22965 0.97376 0.98148 0.91306 0.94555 0.90959 0.92955 0.95742 0.96316 0.80033 0.93237 0.94739 0.90182 0.90519 0.94392 0.90024 0.90596 0.90886 0.89856 0.93935 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 8.95 71.98 0.64 -3.15 16 2 C -0.09 -2.78 2.11 -10.79 -0.02 -2.80 16 3 H 0.07 2.13 6.52 -2.39 -0.02 2.12 16 4 C 0.16 6.33 5.65 86.38 0.49 6.81 16 5 N -0.76 -36.81 5.13 -343.46 -1.76 -38.58 16 6 C -0.24 -14.11 10.47 84.03 0.88 -13.23 16 7 H 0.05 3.55 8.06 -2.91 -0.02 3.52 16 8 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 9 N -0.98 -64.33 13.97 21.65 0.30 -64.03 16 10 Si 0.96 46.42 27.74 68.60 1.90 48.32 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 13 H -0.25 -11.15 6.52 99.48 0.65 -10.50 16 14 C 0.06 1.63 4.42 86.30 0.38 2.02 16 15 N -0.52 -11.86 4.85 -883.04 -4.28 -16.14 16 16 C 0.03 0.57 5.09 86.65 0.44 1.01 16 17 C -0.12 -1.93 7.06 31.80 0.22 -1.70 16 18 C -0.13 -1.85 6.93 31.47 0.22 -1.63 16 19 C 0.03 0.55 6.70 86.45 0.58 1.12 16 20 H 0.04 1.19 7.18 -2.39 -0.02 1.17 16 21 H 0.07 1.92 7.75 -2.39 -0.02 1.90 16 22 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 24 H 0.02 0.76 8.14 -2.38 -0.02 0.75 16 25 H 0.37 16.99 4.71 -92.70 -0.44 16.55 16 26 H 0.26 16.04 8.31 -92.70 -0.77 15.27 16 27 H 0.03 0.89 7.81 -2.39 -0.02 0.87 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.08 1.73 7.56 -2.39 -0.02 1.71 16 30 H 0.04 0.86 8.01 -2.39 -0.02 0.84 16 31 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.04 0.79 7.57 -2.39 -0.02 0.77 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -67.12 282.05 0.99 -66.13 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.53 Total: 19.17 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 4.30 Total: -14.88 kcal Atomic # 7 Polarization: -113.00 SS G_CDS: -5.74 Total: -118.75 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.90 Total: 48.32 kcal Total: -67.12 0.99 -66.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062072202.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.317 kcal (2) G-P(sol) polarization free energy of solvation -67.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds