Wall clock time and date at job start Mon Mar 30 2020 03:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46816 * 2 1 4 4 C 1.52999 * 109.47351 * 240.00201 * 2 1 3 5 5 N 1.46503 * 109.47081 * 64.99639 * 4 2 1 6 6 C 1.36944 * 120.00012 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99631 * 0.02562 * 6 5 4 8 8 C 1.38807 * 119.99910 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00111 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00084 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47052 * 60.00006 * 10 8 6 12 12 H 1.48497 * 109.47331 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47290 * 300.00360 * 10 8 6 14 14 C 1.52999 * 109.47503 * 119.99833 * 2 1 3 15 15 N 1.46894 * 109.47333 * 183.95620 * 14 2 1 16 16 C 1.48533 * 110.99659 * 58.31865 * 15 14 2 17 17 C 1.54940 * 103.22684 * 159.71649 * 16 15 14 18 18 C 1.54595 * 102.92019 * 322.58699 * 17 16 15 19 19 C 1.47907 * 110.99962 * 175.71014 * 15 14 2 20 20 H 1.09001 * 109.47262 * 304.85396 * 1 2 3 21 21 H 1.09006 * 109.47380 * 64.84847 * 1 2 3 22 22 H 1.08997 * 109.47262 * 184.84942 * 1 2 3 23 23 H 1.09001 * 109.46935 * 305.00116 * 4 2 1 24 24 H 1.08997 * 109.47423 * 184.99735 * 4 2 1 25 25 H 0.97001 * 120.00521 * 359.97438 * 5 4 2 26 26 H 0.97007 * 119.99760 * 179.97438 * 9 8 6 27 27 H 1.08996 * 109.47069 * 303.96670 * 14 2 1 28 28 H 1.09000 * 109.46619 * 63.95631 * 14 2 1 29 29 H 1.08999 * 110.66998 * 278.15491 * 16 15 14 30 30 H 1.09002 * 110.67214 * 41.28393 * 16 15 14 31 31 H 1.09003 * 110.72754 * 204.22670 * 17 16 15 32 32 H 1.09002 * 110.72469 * 80.94730 * 17 16 15 33 33 H 1.09002 * 110.30964 * 263.03789 * 18 17 16 34 34 H 1.09007 * 110.30402 * 140.87375 * 18 17 16 35 35 H 1.09001 * 109.91890 * 333.51517 * 19 15 14 36 36 H 1.08999 * 109.91441 * 94.60921 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0354 -2.4424 6 6 2.0011 -0.4207 -3.6857 7 1 2.5614 -1.3384 -3.7865 8 6 1.6343 0.2965 -4.8161 9 7 0.9509 1.4146 -4.6931 10 14 2.1105 -0.3253 -6.5120 11 1 1.5170 -1.6688 -6.7312 12 1 1.6028 0.6139 -7.5441 13 1 3.5895 -0.4158 -6.6088 14 6 2.0401 -0.7212 1.2492 15 7 3.5059 -0.6390 1.2979 16 6 3.9597 0.7753 1.3055 17 6 5.3967 0.6835 1.8773 18 6 5.2719 -0.4227 2.9500 19 6 4.0292 -1.2369 2.5454 20 1 -0.3634 0.5873 0.8433 21 1 -0.3634 0.4368 -0.9303 22 1 -0.3633 -1.0239 0.0869 23 1 1.6054 -1.7197 -1.2952 24 1 3.1263 -0.7994 -1.2056 25 1 1.1481 0.8591 -2.3519 26 1 0.6949 1.9160 -5.4831 27 1 1.6199 -0.2500 2.1377 28 1 1.7358 -1.7673 1.2144 29 1 3.9733 1.1804 0.2936 30 1 3.3254 1.3795 1.9542 31 1 5.6925 1.6294 2.3312 32 1 6.1029 0.3898 1.1006 33 1 5.1294 0.0205 3.9357 34 1 6.1583 -1.0571 2.9441 35 1 3.2750 -1.1781 3.3302 36 1 4.3037 -2.2774 2.3717 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062072204.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:46 Heat of formation + Delta-G solvation = 3.338535 kcal Electronic energy + Delta-G solvation = -14490.332126 eV Core-core repulsion = 12202.163970 eV Total energy + Delta-G solvation = -2288.168156 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.00443 -35.94337 -33.29494 -31.12481 -29.71260 -28.78870 -25.62113 -24.90811 -22.41853 -21.23905 -20.73539 -19.17879 -16.95076 -15.93675 -15.85811 -14.88895 -14.25677 -13.88313 -13.48039 -13.22649 -13.04018 -12.57446 -12.31715 -12.04225 -11.76105 -11.43474 -11.28663 -11.05326 -10.90770 -10.77828 -10.58625 -10.46280 -10.31004 -10.09553 -9.83752 -9.52173 -8.74187 -8.20620 -6.76181 -5.65513 -2.92072 3.51331 3.54975 3.56555 4.13957 4.67393 4.70508 4.76092 4.96169 5.26386 5.33036 5.40491 5.54727 5.62227 5.68477 5.72422 5.77289 5.84190 5.90321 5.99603 6.03044 6.11201 6.20019 6.22319 6.32749 6.55218 6.57831 6.80009 7.05383 7.10306 7.16774 7.27518 7.81295 8.54807 9.65041 10.26536 10.60905 11.57954 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039604 B = 0.006667 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.831885 B = 4198.839318 C = 4535.644512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.069 0.931 4 C 0.164 3.836 5 N -0.734 5.734 6 C -0.231 4.231 7 H 0.069 0.931 8 C -0.018 4.018 9 N -0.938 5.938 10 Si 0.906 3.094 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.287 1.287 14 C 0.058 3.942 15 N -0.511 5.511 16 C 0.034 3.966 17 C -0.124 4.124 18 C -0.130 4.130 19 C 0.034 3.966 20 H 0.040 0.960 21 H 0.070 0.930 22 H 0.049 0.951 23 H 0.013 0.987 24 H 0.034 0.966 25 H 0.381 0.619 26 H 0.254 0.746 27 H 0.029 0.971 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.039 0.961 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.933 -2.405 15.892 16.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.087 0.913 4 C 0.037 3.963 5 N -0.379 5.379 6 C -0.362 4.362 7 H 0.086 0.914 8 C -0.213 4.213 9 N -0.588 5.588 10 Si 0.737 3.263 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.214 1.214 14 C -0.071 4.071 15 N -0.235 5.235 16 C -0.094 4.094 17 C -0.162 4.162 18 C -0.168 4.168 19 C -0.094 4.094 20 H 0.059 0.941 21 H 0.089 0.911 22 H 0.068 0.932 23 H 0.030 0.970 24 H 0.052 0.948 25 H 0.215 0.785 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.057 0.943 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.183 -2.798 15.303 16.398 hybrid contribution -0.332 0.350 -0.216 0.529 sum 4.851 -2.447 15.087 16.036 Atomic orbital electron populations 1.21762 0.95159 1.01204 1.01841 1.21356 0.95559 0.99889 0.94894 0.91288 1.20618 0.97401 0.93372 0.84946 1.42427 1.66847 1.27726 1.00860 1.19221 1.28044 1.05094 0.83879 0.91352 1.24705 1.01406 0.97539 0.97686 1.69654 1.44039 1.16717 1.28351 0.86278 0.77971 0.77619 0.84418 1.21406 1.21801 1.21379 1.22320 0.86859 1.00977 0.96937 1.64772 1.10367 1.14161 1.34219 1.23254 0.94651 0.89802 1.01645 1.22487 0.97428 0.98147 0.98187 1.22383 0.98217 0.97644 0.98577 1.22856 0.95930 0.99578 0.91011 0.94056 0.91114 0.93176 0.96953 0.94849 0.78498 0.93659 0.95304 0.90818 0.89237 0.94156 0.91396 0.90639 0.91937 0.91237 0.94273 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.12 37.16 0.34 -2.01 16 2 C -0.10 -1.70 2.23 -90.62 -0.20 -1.90 16 3 H 0.07 1.24 6.69 -51.93 -0.35 0.90 16 4 C 0.16 3.54 5.59 -4.04 -0.02 3.52 16 5 N -0.73 -19.43 5.28 -59.91 -0.32 -19.75 16 6 C -0.23 -6.74 9.99 -15.06 -0.15 -6.89 16 7 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 8 C -0.02 -0.54 5.50 -17.43 -0.10 -0.63 16 9 N -0.94 -29.17 13.06 55.49 0.72 -28.44 16 10 Si 0.91 23.13 29.55 -169.99 -5.02 18.10 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 C 0.06 0.84 4.24 -3.83 -0.02 0.82 16 15 N -0.51 -7.39 4.68 -230.46 -1.08 -8.47 16 16 C 0.03 0.47 5.34 -1.90 -0.01 0.46 16 17 C -0.12 -1.41 7.06 -24.87 -0.18 -1.58 16 18 C -0.13 -1.32 6.93 -25.38 -0.18 -1.50 16 19 C 0.03 0.40 6.70 -2.76 -0.02 0.38 16 20 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.07 1.36 7.08 -51.93 -0.37 0.99 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.03 0.76 7.58 -51.93 -0.39 0.37 16 25 H 0.38 10.51 6.85 -40.82 -0.28 10.23 16 26 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.03 0.39 7.97 -51.93 -0.41 -0.03 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.09 1.40 7.56 -51.93 -0.39 1.01 16 30 H 0.04 0.52 8.02 -51.93 -0.42 0.11 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.04 0.43 7.67 -51.93 -0.40 0.03 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -31.03 285.41 -8.28 -39.31 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.36 Total: 4.27 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -0.53 Total: -9.33 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.67 Total: -56.66 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.03 -8.28 -39.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062072204.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.650 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds