Wall clock time and date at job start Mon Mar 30 2020 03:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46816 * 2 1 4 4 C 1.52999 * 109.47351 * 240.00201 * 2 1 3 5 5 N 1.46503 * 109.47081 * 64.99639 * 4 2 1 6 6 C 1.36944 * 120.00012 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99631 * 0.02562 * 6 5 4 8 8 C 1.38807 * 119.99910 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00111 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00084 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47052 * 60.00006 * 10 8 6 12 12 H 1.48497 * 109.47331 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47290 * 300.00360 * 10 8 6 14 14 C 1.52999 * 109.47503 * 119.99833 * 2 1 3 15 15 N 1.46894 * 109.47333 * 183.95620 * 14 2 1 16 16 C 1.48533 * 110.99659 * 58.31865 * 15 14 2 17 17 C 1.54940 * 103.22684 * 159.71649 * 16 15 14 18 18 C 1.54595 * 102.92019 * 322.58699 * 17 16 15 19 19 C 1.47907 * 110.99962 * 175.71014 * 15 14 2 20 20 H 1.09001 * 109.47262 * 304.85396 * 1 2 3 21 21 H 1.09006 * 109.47380 * 64.84847 * 1 2 3 22 22 H 1.08997 * 109.47262 * 184.84942 * 1 2 3 23 23 H 1.09001 * 109.46935 * 305.00116 * 4 2 1 24 24 H 1.08997 * 109.47423 * 184.99735 * 4 2 1 25 25 H 0.97001 * 120.00521 * 359.97438 * 5 4 2 26 26 H 0.97007 * 119.99760 * 179.97438 * 9 8 6 27 27 H 1.08996 * 109.47069 * 303.96670 * 14 2 1 28 28 H 1.09000 * 109.46619 * 63.95631 * 14 2 1 29 29 H 1.08999 * 110.66998 * 278.15491 * 16 15 14 30 30 H 1.09002 * 110.67214 * 41.28393 * 16 15 14 31 31 H 1.09003 * 110.72754 * 204.22670 * 17 16 15 32 32 H 1.09002 * 110.72469 * 80.94730 * 17 16 15 33 33 H 1.09002 * 110.30964 * 263.03789 * 18 17 16 34 34 H 1.09007 * 110.30402 * 140.87375 * 18 17 16 35 35 H 1.09001 * 109.91890 * 333.51517 * 19 15 14 36 36 H 1.08999 * 109.91441 * 94.60921 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0354 -2.4424 6 6 2.0011 -0.4207 -3.6857 7 1 2.5614 -1.3384 -3.7865 8 6 1.6343 0.2965 -4.8161 9 7 0.9509 1.4146 -4.6931 10 14 2.1105 -0.3253 -6.5120 11 1 1.5170 -1.6688 -6.7312 12 1 1.6028 0.6139 -7.5441 13 1 3.5895 -0.4158 -6.6088 14 6 2.0401 -0.7212 1.2492 15 7 3.5059 -0.6390 1.2979 16 6 3.9597 0.7753 1.3055 17 6 5.3967 0.6835 1.8773 18 6 5.2719 -0.4227 2.9500 19 6 4.0292 -1.2369 2.5454 20 1 -0.3634 0.5873 0.8433 21 1 -0.3634 0.4368 -0.9303 22 1 -0.3633 -1.0239 0.0869 23 1 1.6054 -1.7197 -1.2952 24 1 3.1263 -0.7994 -1.2056 25 1 1.1481 0.8591 -2.3519 26 1 0.6949 1.9160 -5.4831 27 1 1.6199 -0.2500 2.1377 28 1 1.7358 -1.7673 1.2144 29 1 3.9733 1.1804 0.2936 30 1 3.3254 1.3795 1.9542 31 1 5.6925 1.6294 2.3312 32 1 6.1029 0.3898 1.1006 33 1 5.1294 0.0205 3.9357 34 1 6.1583 -1.0571 2.9441 35 1 3.2750 -1.1781 3.3302 36 1 4.3037 -2.2774 2.3717 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062072204.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:46 Heat of formation + Delta-G solvation = -17.292070 kcal Electronic energy + Delta-G solvation = -14491.226736 eV Core-core repulsion = 12202.163970 eV Total energy + Delta-G solvation = -2289.062766 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.08779 -37.51240 -35.14158 -32.72959 -31.33443 -29.73978 -27.34700 -26.35619 -24.29580 -22.43305 -21.63872 -20.61528 -19.05783 -17.09215 -16.93709 -16.58074 -15.94450 -15.33765 -15.00650 -14.75738 -14.34707 -14.03442 -13.69449 -13.41981 -13.05175 -12.88367 -12.77632 -12.52320 -12.22610 -12.20107 -12.07937 -11.92928 -11.83764 -11.47809 -11.40089 -11.33382 -10.90072 -9.27253 -8.94015 -7.93239 -5.21023 1.46575 1.50414 1.56575 2.57719 3.10266 3.39899 3.70499 3.80480 3.97575 4.03941 4.15196 4.29846 4.37899 4.43693 4.58276 4.65755 4.73509 4.76789 4.82450 4.94081 4.99693 5.00689 5.10079 5.12045 5.24072 5.29752 5.36479 5.42271 5.49315 5.52804 6.04274 6.18621 6.29983 7.35349 8.13518 8.37632 9.30544 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039604 B = 0.006667 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.831885 B = 4198.839318 C = 4535.644512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 H 0.059 0.941 4 C 0.168 3.832 5 N -0.744 5.744 6 C -0.245 4.245 7 H 0.070 0.930 8 C -0.076 4.076 9 N -0.971 5.971 10 Si 0.974 3.026 11 H -0.278 1.278 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.067 3.933 15 N -0.536 5.536 16 C 0.033 3.967 17 C -0.122 4.122 18 C -0.123 4.123 19 C 0.032 3.968 20 H 0.069 0.931 21 H 0.037 0.963 22 H 0.058 0.942 23 H 0.008 0.992 24 H 0.022 0.978 25 H 0.373 0.627 26 H 0.251 0.749 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.481 -3.123 17.240 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 H 0.077 0.923 4 C 0.042 3.958 5 N -0.387 5.387 6 C -0.377 4.377 7 H 0.088 0.912 8 C -0.268 4.268 9 N -0.623 5.623 10 Si 0.803 3.197 11 H -0.204 1.204 12 H -0.219 1.219 13 H -0.205 1.205 14 C -0.062 4.062 15 N -0.261 5.261 16 C -0.095 4.095 17 C -0.160 4.160 18 C -0.161 4.161 19 C -0.095 4.095 20 H 0.088 0.912 21 H 0.056 0.944 22 H 0.077 0.923 23 H 0.026 0.974 24 H 0.040 0.960 25 H 0.205 0.795 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.748 -3.545 16.682 17.997 hybrid contribution -0.487 0.556 -0.596 0.950 sum 5.261 -2.989 16.086 17.186 Atomic orbital electron populations 1.21690 0.94392 1.01988 1.01303 1.21234 0.96103 0.99104 0.94256 0.92302 1.20671 0.96641 0.93133 0.85354 1.42617 1.66664 1.27778 1.01655 1.19607 1.27679 1.05134 0.85260 0.91165 1.25555 1.01813 0.97907 1.01567 1.69817 1.45331 1.17965 1.29141 0.85197 0.77879 0.77200 0.79414 1.20401 1.21870 1.20496 1.22189 0.87329 1.00853 0.95831 1.64718 1.10224 1.14727 1.36390 1.23197 0.96504 0.89599 1.00193 1.22479 0.95510 0.99663 0.98364 1.22379 0.97886 0.97050 0.98830 1.22928 0.96849 0.99664 0.90078 0.91174 0.94395 0.92311 0.97387 0.95982 0.79519 0.94003 0.93206 0.90429 0.92375 0.93315 0.89620 0.91777 0.90070 0.90235 0.93010 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 9.12 71.98 0.66 -3.73 16 2 C -0.09 -3.01 2.23 -10.79 -0.02 -3.04 16 3 H 0.06 2.14 6.69 -2.39 -0.02 2.12 16 4 C 0.17 7.38 5.59 86.38 0.48 7.86 16 5 N -0.74 -40.31 5.28 -343.45 -1.81 -42.13 16 6 C -0.24 -14.49 9.99 84.03 0.84 -13.65 16 7 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 8 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 9 N -0.97 -61.39 13.06 21.65 0.28 -61.11 16 10 Si 0.97 47.77 29.55 68.60 2.03 49.80 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 14 C 0.07 1.82 4.24 86.30 0.37 2.19 16 15 N -0.54 -14.81 4.68 -883.04 -4.13 -18.94 16 16 C 0.03 0.87 5.34 86.65 0.46 1.33 16 17 C -0.12 -2.57 7.06 31.80 0.22 -2.34 16 18 C -0.12 -2.16 6.93 31.47 0.22 -1.94 16 19 C 0.03 0.68 6.70 86.44 0.58 1.26 16 20 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.04 1.46 7.08 -2.38 -0.02 1.45 16 22 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 24 H 0.02 1.02 7.58 -2.39 -0.02 1.01 16 25 H 0.37 21.22 6.85 -92.71 -0.63 20.59 16 26 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 27 H 0.05 1.18 7.97 -2.39 -0.02 1.16 16 28 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 1.88 7.56 -2.39 -0.02 1.86 16 30 H 0.05 1.19 8.02 -2.39 -0.02 1.17 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.05 0.96 7.67 -2.39 -0.02 0.94 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -66.36 285.41 1.03 -65.33 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.39 Total: 23.21 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 4.27 Total: -16.16 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -5.66 Total: -122.17 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -66.36 1.03 -65.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062072204.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.035 kcal (2) G-P(sol) polarization free energy of solvation -66.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds