Wall clock time and date at job start Mon Mar 30 2020 03:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47262 * 2 1 4 4 C 1.50700 * 109.47405 * 119.99769 * 2 1 3 5 5 H 1.08000 * 119.99814 * 119.99670 * 4 2 1 6 6 C 1.37875 * 119.99836 * 300.00323 * 4 2 1 7 7 N 1.31522 * 119.99853 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00023 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.47153 * 90.00489 * 8 6 4 10 10 H 1.48509 * 109.46782 * 209.99894 * 8 6 4 11 11 H 1.48490 * 109.47147 * 329.99867 * 8 6 4 12 12 N 1.46901 * 109.47407 * 239.99761 * 2 1 3 13 13 C 1.48553 * 111.00292 * 180.12589 * 12 2 1 14 14 C 1.54386 * 104.59670 * 200.96287 * 13 12 2 15 15 C 1.54255 * 105.05809 * 23.84985 * 14 13 12 16 16 H 1.08997 * 110.32277 * 241.00534 * 15 14 13 17 17 N 1.46906 * 110.32125 * 118.89875 * 15 14 13 18 18 C 1.46901 * 110.99793 * 71.45495 * 17 15 14 19 19 C 1.46898 * 110.99820 * 307.49811 * 17 15 14 20 20 C 1.48567 * 110.99820 * 64.70562 * 12 2 1 21 21 H 1.09002 * 109.47262 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46964 * 299.99983 * 1 2 3 23 23 H 1.08997 * 109.46988 * 60.00248 * 1 2 3 24 24 H 0.97000 * 119.99441 * 179.97438 * 7 6 4 25 25 H 1.08997 * 110.41668 * 82.17979 * 13 12 2 26 26 H 1.09003 * 110.51512 * 319.79177 * 13 12 2 27 27 H 1.08999 * 110.31944 * 264.95708 * 14 13 12 28 28 H 1.08997 * 110.40752 * 142.79489 * 14 13 12 29 29 H 1.09002 * 109.47401 * 59.99808 * 18 17 15 30 30 H 1.09001 * 109.46874 * 299.99821 * 18 17 15 31 31 H 1.09004 * 109.46970 * 179.97438 * 18 17 15 32 32 H 1.09006 * 109.46770 * 179.97438 * 19 17 15 33 33 H 1.09001 * 109.47456 * 299.99928 * 19 17 15 34 34 H 1.09000 * 109.46814 * 60.00233 * 19 17 15 35 35 H 1.09003 * 110.40761 * 40.26217 * 20 12 2 36 36 H 1.08991 * 110.41141 * 277.82143 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5566 8 14 0.6258 1.2799 2.6540 9 1 -0.8021 0.8745 2.6993 10 1 0.9771 1.9954 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0197 -0.6925 -1.1994 13 6 3.5047 -0.7150 -1.2322 14 6 3.8575 -0.9542 -2.7160 15 6 2.6297 -0.4552 -3.5054 16 1 2.1905 -1.2718 -4.0783 17 7 3.0112 0.6466 -4.3991 18 6 3.8192 0.1564 -5.5237 19 6 3.7198 1.7012 -3.6618 20 6 1.6384 0.0437 -2.4322 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.9032 -0.5278 4.4375 25 1 3.8864 -1.5281 -0.6148 26 1 3.9087 0.2394 -0.8945 27 1 4.0198 -2.0162 -2.9001 28 1 4.7435 -0.3829 -2.9929 29 1 3.2439 -0.5729 -6.0939 30 1 4.7255 -0.3138 -5.1421 31 1 4.0876 0.9924 -6.1699 32 1 3.9910 2.5042 -4.3473 33 1 3.0721 2.0949 -2.8785 34 1 4.6225 1.2868 -3.2129 35 1 1.7485 1.1178 -2.2828 36 1 0.6149 -0.1983 -2.7183 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062965655.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:56 Heat of formation + Delta-G solvation = 26.377803 kcal Electronic energy + Delta-G solvation = -15092.119179 eV Core-core repulsion = 12804.950081 eV Total energy + Delta-G solvation = -2287.169098 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.36469 -36.17360 -33.15631 -31.25076 -28.47019 -27.94850 -27.53564 -25.06277 -23.29993 -21.59949 -19.53404 -19.18625 -16.79226 -16.11184 -15.70939 -14.67716 -14.51040 -14.21974 -13.47337 -13.30970 -12.77104 -12.49509 -12.37753 -12.16665 -11.88907 -11.78217 -11.44900 -11.26683 -10.85134 -10.69126 -10.55080 -10.46287 -10.18496 -10.08112 -9.46304 -9.03771 -8.56520 -8.20389 -7.49809 -6.07138 -4.05737 3.26735 3.36220 3.38391 4.01045 4.39585 4.88069 5.00174 5.16700 5.22181 5.26684 5.39547 5.42164 5.52723 5.64841 5.79129 5.81617 5.94370 5.98896 6.13166 6.27798 6.30584 6.42589 6.47073 6.51634 6.55471 6.76314 6.81300 7.08077 7.13091 7.28516 7.54506 7.90026 7.98466 8.63765 8.99489 9.55037 11.05832 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.050467 B = 0.008434 C = 0.008044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.682716 B = 3318.930990 C = 3480.144222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.173 3.827 3 H -0.002 1.002 4 C -0.505 4.505 5 H 0.081 0.919 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.495 5.495 13 C 0.054 3.946 14 C -0.160 4.160 15 C 0.079 3.921 16 H 0.087 0.913 17 N -0.540 5.540 18 C 0.025 3.975 19 C 0.015 3.985 20 C 0.036 3.964 21 H 0.060 0.940 22 H 0.040 0.960 23 H 0.028 0.972 24 H 0.264 0.736 25 H 0.081 0.919 26 H 0.036 0.964 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.026 0.974 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.043 0.957 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.235 3.444 -14.385 14.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.065 3.935 3 H 0.016 0.984 4 C -0.543 4.543 5 H 0.099 0.901 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.195 1.195 12 N -0.219 5.219 13 C -0.074 4.074 14 C -0.200 4.200 15 C -0.030 4.030 16 H 0.106 0.894 17 N -0.263 5.263 18 C -0.124 4.124 19 C -0.133 4.133 20 C -0.093 4.093 21 H 0.080 0.920 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.564 3.114 -14.351 14.768 hybrid contribution 0.455 1.288 0.648 1.512 sum 2.019 4.402 -13.703 14.534 Atomic orbital electron populations 1.22126 0.98361 1.01344 0.98238 1.19860 0.91760 0.92567 0.89283 0.98430 1.20955 1.31884 1.13567 0.87929 0.90128 1.24929 0.95819 0.96636 0.95811 1.69887 1.45779 1.40271 0.97861 0.86872 0.80827 0.83802 0.76777 1.20484 1.22487 1.19487 1.65363 1.07739 1.47431 1.01404 1.22777 0.89847 1.00898 0.93877 1.23034 0.98245 1.01411 0.97269 1.22529 0.95147 0.92346 0.92963 0.89436 1.62227 1.42318 1.11347 1.10395 1.22346 0.96054 1.00171 0.93806 1.22499 0.97638 0.94530 0.98661 1.23146 0.98559 0.96728 0.90819 0.92043 0.94122 0.95278 0.92637 0.90072 0.94552 0.91396 0.91758 0.91537 0.95545 0.91784 0.91847 0.90987 0.94848 0.93887 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.64 37.15 0.32 -2.91 16 2 C 0.17 4.19 1.42 -68.87 -0.10 4.09 16 3 H 0.00 -0.04 7.03 -51.93 -0.37 -0.41 16 4 C -0.51 -14.29 8.67 -34.44 -0.30 -14.58 16 5 H 0.08 2.48 7.19 -52.49 -0.38 2.10 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 8 Si 0.89 22.20 24.37 -169.99 -4.14 18.06 16 9 H -0.28 -6.79 6.87 56.52 0.39 -6.40 16 10 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.27 -6.52 6.53 56.52 0.37 -6.15 16 12 N -0.49 -10.45 5.19 -223.41 -1.16 -11.61 16 13 C 0.05 1.06 5.68 -2.18 -0.01 1.04 16 14 C -0.16 -2.45 5.57 -25.35 -0.14 -2.59 16 15 C 0.08 1.19 3.12 -66.33 -0.21 0.98 16 16 H 0.09 1.26 8.10 -51.93 -0.42 0.84 16 17 N -0.54 -7.26 5.02 -241.50 -1.21 -8.47 16 18 C 0.02 0.27 9.38 60.07 0.56 0.83 16 19 C 0.01 0.19 8.92 60.06 0.54 0.73 16 20 C 0.04 0.64 5.04 -2.18 -0.01 0.63 16 21 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 22 H 0.04 0.95 3.27 -51.93 -0.17 0.78 16 23 H 0.03 0.57 7.07 -51.93 -0.37 0.20 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.08 1.70 7.42 -51.93 -0.39 1.31 16 26 H 0.04 0.73 7.98 -51.93 -0.41 0.32 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.91 5.20 -51.93 -0.27 0.64 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.28 7.11 -51.93 -0.37 -0.09 16 31 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 32 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 33 H 0.07 1.04 6.14 -51.93 -0.32 0.72 16 34 H 0.03 0.44 5.93 -51.93 -0.31 0.13 16 35 H 0.04 0.78 5.70 -51.93 -0.30 0.49 16 36 H 0.08 1.31 7.70 -51.93 -0.40 0.91 16 LS Contribution 265.76 15.07 4.00 4.00 Total: -1.00 -29.90 265.76 -6.93 -36.84 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -5.75 Total: -2.14 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 0.55 Total: -9.87 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -1.60 Total: -46.89 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.14 Total: 18.06 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.90 -6.93 -36.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062965655.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.216 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds