Wall clock time and date at job start Mon Mar 30 2020 03:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47262 * 2 1 4 4 C 1.50700 * 109.47405 * 119.99769 * 2 1 3 5 5 H 1.08000 * 119.99814 * 119.99670 * 4 2 1 6 6 C 1.37875 * 119.99836 * 300.00323 * 4 2 1 7 7 N 1.31522 * 119.99853 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00023 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.47153 * 90.00489 * 8 6 4 10 10 H 1.48509 * 109.46782 * 209.99894 * 8 6 4 11 11 H 1.48490 * 109.47147 * 329.99867 * 8 6 4 12 12 N 1.46901 * 109.47407 * 239.99761 * 2 1 3 13 13 C 1.48553 * 111.00292 * 180.12589 * 12 2 1 14 14 C 1.54386 * 104.59670 * 200.96287 * 13 12 2 15 15 C 1.54255 * 105.05809 * 23.84985 * 14 13 12 16 16 H 1.08997 * 110.32277 * 241.00534 * 15 14 13 17 17 N 1.46906 * 110.32125 * 118.89875 * 15 14 13 18 18 C 1.46901 * 110.99793 * 71.45495 * 17 15 14 19 19 C 1.46898 * 110.99820 * 307.49811 * 17 15 14 20 20 C 1.48567 * 110.99820 * 64.70562 * 12 2 1 21 21 H 1.09002 * 109.47262 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46964 * 299.99983 * 1 2 3 23 23 H 1.08997 * 109.46988 * 60.00248 * 1 2 3 24 24 H 0.97000 * 119.99441 * 179.97438 * 7 6 4 25 25 H 1.08997 * 110.41668 * 82.17979 * 13 12 2 26 26 H 1.09003 * 110.51512 * 319.79177 * 13 12 2 27 27 H 1.08999 * 110.31944 * 264.95708 * 14 13 12 28 28 H 1.08997 * 110.40752 * 142.79489 * 14 13 12 29 29 H 1.09002 * 109.47401 * 59.99808 * 18 17 15 30 30 H 1.09001 * 109.46874 * 299.99821 * 18 17 15 31 31 H 1.09004 * 109.46970 * 179.97438 * 18 17 15 32 32 H 1.09006 * 109.46770 * 179.97438 * 19 17 15 33 33 H 1.09001 * 109.47456 * 299.99928 * 19 17 15 34 34 H 1.09000 * 109.46814 * 60.00233 * 19 17 15 35 35 H 1.09003 * 110.40761 * 40.26217 * 20 12 2 36 36 H 1.08991 * 110.41141 * 277.82143 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5566 8 14 0.6258 1.2799 2.6540 9 1 -0.8021 0.8745 2.6993 10 1 0.9771 1.9954 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0197 -0.6925 -1.1994 13 6 3.5047 -0.7150 -1.2322 14 6 3.8575 -0.9542 -2.7160 15 6 2.6297 -0.4552 -3.5054 16 1 2.1905 -1.2718 -4.0783 17 7 3.0112 0.6466 -4.3991 18 6 3.8192 0.1564 -5.5237 19 6 3.7198 1.7012 -3.6618 20 6 1.6384 0.0437 -2.4322 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.9032 -0.5278 4.4375 25 1 3.8864 -1.5281 -0.6148 26 1 3.9087 0.2394 -0.8945 27 1 4.0198 -2.0162 -2.9001 28 1 4.7435 -0.3829 -2.9929 29 1 3.2439 -0.5729 -6.0939 30 1 4.7255 -0.3138 -5.1421 31 1 4.0876 0.9924 -6.1699 32 1 3.9910 2.5042 -4.3473 33 1 3.0721 2.0949 -2.8785 34 1 4.6225 1.2868 -3.2129 35 1 1.7485 1.1178 -2.2828 36 1 0.6149 -0.1983 -2.7183 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062965655.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:55 Heat of formation + Delta-G solvation = 2.999529 kcal Electronic energy + Delta-G solvation = -15093.132937 eV Core-core repulsion = 12804.950081 eV Total energy + Delta-G solvation = -2288.182856 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.71634 -37.62135 -35.02435 -33.13449 -29.92273 -29.44558 -28.49981 -27.04163 -24.53413 -23.19691 -21.31865 -20.44591 -18.83662 -17.50439 -17.19190 -16.35041 -15.85061 -15.47640 -15.16985 -14.75771 -14.46875 -14.22542 -13.95107 -13.64142 -13.09967 -12.88745 -12.81934 -12.56656 -12.48254 -12.42127 -12.14392 -12.02592 -11.84293 -11.56230 -11.42153 -11.06521 -10.75730 -9.27593 -9.16767 -8.31442 -6.35002 1.27934 1.32362 1.42702 2.28951 2.90200 3.02419 3.41413 3.70353 3.86646 4.10612 4.29035 4.32597 4.46499 4.50812 4.55591 4.61139 4.66201 4.71869 4.75084 4.77160 4.89951 4.94545 5.06656 5.07790 5.09163 5.15046 5.18486 5.38823 5.61656 5.91929 6.02810 6.13263 6.26521 6.60576 6.70821 7.30087 8.85205 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.050467 B = 0.008434 C = 0.008044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.682716 B = 3318.930990 C = 3480.144222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.177 3.823 3 H -0.011 1.011 4 C -0.509 4.509 5 H 0.038 0.962 6 C 0.013 3.987 7 N -0.947 5.947 8 Si 0.949 3.051 9 H -0.263 1.263 10 H -0.296 1.296 11 H -0.254 1.254 12 N -0.510 5.510 13 C 0.054 3.946 14 C -0.146 4.146 15 C 0.088 3.912 16 H 0.101 0.899 17 N -0.545 5.545 18 C 0.023 3.977 19 C 0.016 3.984 20 C 0.036 3.964 21 H 0.055 0.945 22 H 0.034 0.966 23 H 0.061 0.939 24 H 0.266 0.734 25 H 0.053 0.947 26 H 0.022 0.978 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.030 0.970 35 H 0.040 0.960 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.471 4.733 -16.786 17.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.069 3.931 3 H 0.006 0.994 4 C -0.547 4.547 5 H 0.056 0.944 6 C -0.184 4.184 7 N -0.587 5.587 8 Si 0.776 3.224 9 H -0.189 1.189 10 H -0.224 1.224 11 H -0.178 1.178 12 N -0.234 5.234 13 C -0.075 4.075 14 C -0.185 4.185 15 C -0.021 4.021 16 H 0.119 0.881 17 N -0.268 5.268 18 C -0.124 4.124 19 C -0.132 4.132 20 C -0.092 4.092 21 H 0.074 0.926 22 H 0.053 0.947 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.047 0.953 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.802 4.400 -16.790 17.375 hybrid contribution 0.780 0.820 1.353 1.764 sum 1.582 5.220 -15.436 16.371 Atomic orbital electron populations 1.22030 0.96639 1.01469 0.99504 1.19679 0.93030 0.91471 0.88939 0.99366 1.21183 1.31025 1.12378 0.90133 0.94386 1.25780 0.97357 0.99980 0.95329 1.70036 1.47712 1.42445 0.98551 0.85845 0.79430 0.79936 0.77157 1.18902 1.22375 1.17809 1.65270 1.08573 1.47851 1.01708 1.22718 0.89149 0.99062 0.96568 1.22940 0.99263 1.02397 0.93937 1.22412 0.93994 0.93120 0.92564 0.88140 1.62228 1.43359 1.10754 1.10441 1.22439 0.95878 1.01150 0.92953 1.22498 0.96912 0.95081 0.98752 1.23202 0.99849 0.96259 0.89893 0.92555 0.94702 0.92013 0.92461 0.92892 0.95965 0.90429 0.90221 0.90530 0.95285 0.90146 0.89662 0.92829 0.95203 0.94173 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.02 8.64 71.98 0.62 -5.39 16 2 C 0.18 8.54 1.42 44.17 0.06 8.61 16 3 H -0.01 -0.55 7.03 -2.39 -0.02 -0.57 16 4 C -0.51 -29.67 8.67 25.60 0.22 -29.45 16 5 H 0.04 2.47 7.19 -2.91 -0.02 2.45 16 6 C 0.01 0.76 5.45 84.65 0.46 1.22 16 7 N -0.95 -59.88 13.96 21.45 0.30 -59.58 16 8 Si 0.95 45.61 24.37 68.60 1.67 47.29 16 9 H -0.26 -11.97 6.87 99.48 0.68 -11.29 16 10 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 11 H -0.25 -11.46 6.53 99.48 0.65 -10.81 16 12 N -0.51 -21.37 5.19 -860.72 -4.47 -25.84 16 13 C 0.05 2.11 5.68 86.45 0.49 2.60 16 14 C -0.15 -4.24 5.57 31.49 0.18 -4.06 16 15 C 0.09 2.42 3.12 45.81 0.14 2.56 16 16 H 0.10 2.54 8.10 -2.39 -0.02 2.52 16 17 N -0.54 -12.90 5.02 -917.96 -4.61 -17.51 16 18 C 0.02 0.42 9.38 127.69 1.20 1.62 16 19 C 0.02 0.37 8.92 127.69 1.14 1.51 16 20 C 0.04 1.21 5.04 86.45 0.44 1.64 16 21 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 22 H 0.03 1.53 3.27 -2.39 -0.01 1.53 16 23 H 0.06 2.24 7.07 -2.39 -0.02 2.23 16 24 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 25 H 0.05 2.34 7.42 -2.39 -0.02 2.32 16 26 H 0.02 0.92 7.98 -2.39 -0.02 0.90 16 27 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.08 2.09 5.20 -2.39 -0.01 2.07 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.03 0.51 7.11 -2.39 -0.02 0.49 16 31 H 0.08 1.19 8.12 -2.38 -0.02 1.17 16 32 H 0.08 1.62 8.12 -2.38 -0.02 1.60 16 33 H 0.05 1.46 6.14 -2.39 -0.01 1.44 16 34 H 0.03 0.72 5.93 -2.39 -0.01 0.70 16 35 H 0.04 1.38 5.70 -2.39 -0.01 1.37 16 36 H 0.08 2.68 7.70 -2.39 -0.02 2.66 16 Total: -1.00 -65.46 265.76 -1.19 -66.65 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.96 Total: 8.15 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 4.95 Total: -19.15 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -8.77 Total: -102.92 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.67 Total: 47.29 kcal Total: -65.46 -1.19 -66.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062965655.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.646 kcal (2) G-P(sol) polarization free energy of solvation -65.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds