Wall clock time and date at job start Mon Mar 30 2020 03:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.48532 * 111.00541 * 177.60356 * 12 2 1 14 14 C 1.54936 * 103.22993 * 159.72331 * 13 12 2 15 15 C 1.54597 * 102.92067 * 322.58643 * 14 13 12 16 16 H 1.08999 * 110.39179 * 263.00407 * 15 14 13 17 17 N 1.46897 * 110.30928 * 140.87661 * 15 14 13 18 18 C 1.46896 * 111.00129 * 64.28048 * 17 15 14 19 19 C 1.46901 * 111.00071 * 188.24167 * 17 15 14 20 20 C 1.47899 * 111.00184 * 295.00060 * 12 2 1 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 25 25 H 1.09008 * 110.66442 * 278.15982 * 13 12 2 26 26 H 1.09005 * 110.66471 * 41.28531 * 13 12 2 27 27 H 1.09001 * 110.72353 * 204.23058 * 14 13 12 28 28 H 1.08999 * 110.87977 * 81.01471 * 14 13 12 29 29 H 1.09003 * 109.46695 * 60.00239 * 18 17 15 30 30 H 1.09002 * 109.47074 * 180.02562 * 18 17 15 31 31 H 1.08997 * 109.47144 * 300.00314 * 18 17 15 32 32 H 1.09003 * 109.47181 * 59.99135 * 19 17 15 33 33 H 1.09000 * 109.47176 * 180.02562 * 19 17 15 34 34 H 1.09007 * 109.46677 * 299.99452 * 19 17 15 35 35 H 1.08997 * 109.91594 * 333.50963 * 20 12 2 36 36 H 1.09010 * 109.91620 * 94.80015 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1993 13 6 3.5034 -0.7627 1.2050 14 6 3.8408 -1.0123 2.6965 15 6 2.7915 -0.1517 3.4370 16 1 3.2187 0.8115 3.7158 17 7 2.3039 -0.8567 4.6299 18 6 3.3852 -1.0517 5.6049 19 6 1.1707 -0.1449 5.2358 20 6 1.6463 0.0441 2.4263 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7093 1.1619 -3.4844 25 1 3.8516 -1.5911 0.5879 26 1 3.9344 0.1791 0.8654 27 1 4.8504 -0.6715 2.9258 28 1 3.7239 -2.0659 2.9502 29 1 3.7796 -0.0820 5.9088 30 1 2.9970 -1.5763 6.4780 31 1 4.1815 -1.6418 5.1513 32 1 0.3571 -0.0757 4.5136 33 1 0.8296 -0.6881 6.1171 34 1 1.4849 0.8577 5.5263 35 1 1.5267 1.1038 2.2013 36 1 0.7188 -0.3588 2.8335 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062965656.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:58 Heat of formation + Delta-G solvation = 15.396828 kcal Electronic energy + Delta-G solvation = -14898.007466 eV Core-core repulsion = 12610.362197 eV Total energy + Delta-G solvation = -2287.645269 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.92052 -36.07991 -33.26168 -30.86860 -28.66099 -27.53458 -26.77612 -25.01399 -23.23540 -21.14469 -19.92254 -18.95310 -16.55327 -15.84399 -15.45521 -14.53594 -14.47810 -13.86880 -13.56009 -13.09663 -12.64321 -12.29850 -12.14620 -11.91344 -11.82782 -11.30457 -11.14983 -10.86173 -10.69544 -10.62096 -10.47008 -10.38745 -10.02757 -9.98660 -9.72868 -8.82702 -8.39515 -8.17327 -7.18182 -5.97578 -4.02009 3.34782 3.38749 3.42111 4.09985 4.44350 4.99401 5.04613 5.24698 5.32385 5.41660 5.43183 5.57581 5.62660 5.71815 5.87027 5.90920 6.02332 6.16775 6.24613 6.28706 6.44748 6.70980 6.72745 6.87873 7.11615 7.15562 7.19556 7.32287 7.53861 7.70592 7.87049 8.20247 8.37654 8.61953 9.04603 9.63014 11.09415 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055652 B = 0.007585 C = 0.006918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.006202 B = 3690.726375 C = 4046.249495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.203 3.797 3 H -0.002 1.002 4 C -0.503 4.503 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.507 5.507 13 C 0.055 3.945 14 C -0.117 4.117 15 C 0.073 3.927 16 H 0.038 0.962 17 N -0.535 5.535 18 C 0.025 3.975 19 C 0.021 3.979 20 C 0.044 3.956 21 H 0.005 0.995 22 H 0.034 0.966 23 H 0.084 0.916 24 H 0.260 0.740 25 H 0.079 0.921 26 H 0.036 0.964 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.019 0.981 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.020 0.980 35 H 0.033 0.967 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.410 -1.016 12.406 12.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.097 3.903 3 H 0.016 0.984 4 C -0.541 4.541 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.232 5.232 13 C -0.074 4.074 14 C -0.156 4.156 15 C -0.036 4.036 16 H 0.055 0.945 17 N -0.259 5.259 18 C -0.123 4.123 19 C -0.127 4.127 20 C -0.085 4.085 21 H 0.024 0.976 22 H 0.053 0.947 23 H 0.102 0.898 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.038 0.962 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.051 0.949 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.912 -1.867 12.089 12.574 hybrid contribution 0.881 1.313 -0.594 1.689 sum 3.793 -0.553 11.495 12.117 Atomic orbital electron populations 1.21767 0.97647 0.99644 0.99705 1.19439 0.92584 0.91872 0.86407 0.98436 1.21109 1.30959 1.12266 0.89788 0.92020 1.24935 0.95226 0.95084 0.99018 1.69883 1.37011 1.23069 1.23459 0.86581 0.79044 0.79807 0.82085 1.20189 1.21393 1.20373 1.64876 1.08137 1.48184 1.01980 1.22921 0.90198 1.00491 0.93790 1.22622 0.96226 1.00702 0.96016 1.22609 0.96126 0.94483 0.90370 0.94454 1.62090 1.08098 1.49389 1.06295 1.22360 0.94689 0.99687 0.95560 1.22443 0.94754 0.95863 0.99690 1.22919 0.97608 0.96361 0.91604 0.97624 0.94661 0.89773 0.92978 0.90308 0.94591 0.92446 0.90163 0.96223 0.91775 0.91268 0.90614 0.91745 0.96145 0.94866 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.95 37.16 0.33 -2.94 16 2 C 0.20 5.29 1.77 -68.87 -0.12 5.17 16 3 H 0.00 -0.05 7.96 -51.93 -0.41 -0.47 16 4 C -0.50 -14.05 8.06 -34.44 -0.28 -14.33 16 5 H 0.06 1.72 6.81 -52.49 -0.36 1.36 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.89 11.32 55.43 0.63 -25.26 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 N -0.51 -11.42 5.10 -223.88 -1.14 -12.56 16 13 C 0.05 1.10 5.69 -1.90 -0.01 1.09 16 14 C -0.12 -1.91 5.60 -24.87 -0.14 -2.05 16 15 C 0.07 1.18 2.73 -66.36 -0.18 1.00 16 16 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 17 N -0.53 -7.76 4.82 -241.53 -1.16 -8.92 16 18 C 0.03 0.30 9.38 60.06 0.56 0.86 16 19 C 0.02 0.26 9.22 60.07 0.55 0.82 16 20 C 0.04 0.85 4.75 -2.76 -0.01 0.83 16 21 H 0.00 0.11 7.35 -51.93 -0.38 -0.27 16 22 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.08 2.31 6.07 -51.93 -0.32 1.99 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.08 1.63 7.32 -51.92 -0.38 1.25 16 26 H 0.04 0.75 8.02 -51.93 -0.42 0.34 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.31 7.91 -51.93 -0.41 0.90 16 29 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 31 H 0.07 0.79 7.17 -51.93 -0.37 0.42 16 32 H 0.08 1.01 6.08 -51.93 -0.32 0.70 16 33 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 34 H 0.02 0.24 8.14 -51.92 -0.42 -0.18 16 35 H 0.03 0.66 7.65 -51.93 -0.40 0.27 16 36 H 0.08 1.48 6.03 -51.92 -0.31 1.17 16 LS Contribution 277.19 15.07 4.18 4.18 Total: -1.00 -29.17 277.19 -8.07 -37.24 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -6.17 Total: -3.25 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 0.61 Total: -8.01 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -1.68 Total: -46.74 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.17 -8.07 -37.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062965656.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.638 kcal (2) G-P(sol) polarization free energy of solvation -29.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds